mRNA_1146 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151669
Unique NamemRNA_1146
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: A0A836CNI8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNI8_9STRA)

HSP 1 Score: 181 bits (458), Expect = 6.800e-58
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1
Query:    1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 255
            GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY
Sbjct:    1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 85          
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: A0A7S3RKS5_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RKS5_9SPIT)

HSP 1 Score: 108 bits (269), Expect = 7.170e-28
Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 255
            GE GEL ECF W+ +  CAPGL  W++ +R HL +  +DV++YL+RL+DRC +DL RA  AK+ RNA KYPAHL +G A KYT Y
Sbjct:   98 GEVGELSECFQWKSDASCAPGLPEWSEAERLHLGEEIADVMLYLVRLADRCAIDLPRAVIAKLERNAQKYPAHLCKGSAAKYTAY 182          
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: A0A5J4YZL8_PORPP (dCTP pyrophosphatase 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZL8_PORPP)

HSP 1 Score: 103 bits (256), Expect = 2.210e-26
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYT 249
            GE GEL E F W+G+  C PGL  W+D +R+HL +  SDV+IYL+RL+DRCGV LA A   K  +NA KYPA  ARG A KYT
Sbjct:   49 GEVGELAELFQWKGDAGCGPGLPGWSDAEREHLGEEMSDVLIYLIRLADRCGVSLAEAVRLKFEKNALKYPAEHARGSAAKYT 131          
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: R1ECV0_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ECV0_EMIHU)

HSP 1 Score: 98.2 bits (243), Expect = 7.000e-25
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYP 213
            GE GELCECF WRG+  CAPGL  WTD  R HL +  +DV++YL+RL+DR G+DL  A AAK+ RN  KYP
Sbjct:   33 GEVGELCECFQWRGDAACAPGLPGWTDADRTHLGEEMADVLMYLVRLADRSGIDLPAACAAKLERNGQKYP 103          
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: W4G3E3_9STRA (dCTP pyrophosphatase 1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G3E3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.170e-24
Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 255
            GE GE+CECF WRG+D     +  W+ E ++HL +  SDV+IYL+RL+DRC +DLA A   KM +NA KYPA+LA+G + KYT Y
Sbjct:   77 GEVGEVCECFQWRGDD--GQDVDGWSAEDKEHLGEELSDVLIYLVRLADRCNIDLATAALRKMDKNAIKYPANLAKGSSQKYTAY 159          
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: E1ZA40_CHLVA (Uncharacterized protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZA40_CHLVA)

HSP 1 Score: 98.2 bits (243), Expect = 1.230e-24
Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 255
            GEAGEL ECF W+GE    PGL  ++ E+R  + +  SDV++YL+RLSD CG+DLA A AAK+R+NAAKYPA   RG + KYT Y
Sbjct:   32 GEAGELAECFQWKGE--VLPGLPGFSAEERQLIGEELSDVLLYLVRLSDACGIDLAAAAAAKLRKNAAKYPADRCRGSSAKYTRY 114          
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: C1N020_MICPC (Xtp3a-related NTP pyrophosphatase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N020_MICPC)

HSP 1 Score: 103 bits (258), Expect = 3.120e-24
Identity = 51/85 (60.00%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 255
            GE GE+ E F WRG+DDCA GL +W+ E R  L    +DV +YL+RL+DRCGVDLA A  AKM +NAAKYPA   RG A KYT Y
Sbjct:  198 GEVGEVSELFQWRGDDDCATGLPSWSREDRARLEDELADVQLYLVRLADRCGVDLAAATRAKMAKNAAKYPADRCRGSAAKYTAY 282          
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: A0A6G0WE78_9STRA (dCTP pyrophosphatase 1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WE78_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.720e-23
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 255
            GE GE+CECF WRG+ D    +  W+ E ++HL +  SDV+IYL+RL+DRC VDL  A   K+ +NA KYP  LA+G + KYT+Y
Sbjct:   46 GEVGEVCECFQWRGDHD--QDVDKWSAEDKEHLGEELSDVLIYLIRLADRCNVDLPAAALRKIEKNAVKYPVDLAKGSSKKYTEY 128          
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: A0A024TDT0_9STRA (dCTP pyrophosphatase 1 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TDT0_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.370e-23
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 255
            GE GE+CECF WR +D     +  WT E ++HL +  SDV+IYL+RL+DRC +DL  A   KM +NA KYPA LA+G + KYT Y
Sbjct:   59 GEVGEVCECFQWRNDD--GQDVDTWTAEDKEHLGEELSDVLIYLVRLADRCNIDLPTAALRKMEKNAIKYPAKLAKGSSLKYTAY 141          
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: L1IV90_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IV90_GUITC)

HSP 1 Score: 97.4 bits (241), Expect = 2.700e-23
Identity = 44/85 (51.76%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 255
            GE GELCECF W+ +    PGL +W+ E+R H+ +  SDV++YL+RL+DRC VDL+ A  AK+ +N  KYPA L +G + KYT Y
Sbjct:  131 GEVGELCECFQWKRDCGANPGLPSWSAEERVHVGEEMSDVLLYLIRLADRCEVDLSTAVLAKIEKNGKKYPASLVKGSSAKYTAY 215          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CNI8_9STRA6.800e-58100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3RKS5_9SPIT7.170e-2856.47Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A5J4YZL8_PORPP2.210e-2657.83dCTP pyrophosphatase 1 n=1 Tax=Porphyridium purpur... [more]
R1ECV0_EMIHU7.000e-2560.56Uncharacterized protein (Fragment) n=1 Tax=Emilian... [more]
W4G3E3_9STRA1.170e-2454.12dCTP pyrophosphatase 1 n=2 Tax=Aphanomyces astaci ... [more]
E1ZA40_CHLVA1.230e-2457.65Uncharacterized protein (Fragment) n=1 Tax=Chlorel... [more]
C1N020_MICPC3.120e-2460.00Xtp3a-related NTP pyrophosphatase n=1 Tax=Micromon... [more]
A0A6G0WE78_9STRA1.720e-2351.76dCTP pyrophosphatase 1 n=1 Tax=Aphanomyces euteich... [more]
A0A024TDT0_9STRA2.370e-2352.94dCTP pyrophosphatase 1 n=1 Tax=Aphanomyces invadan... [more]
L1IV90_GUITC2.700e-2351.76Uncharacterized protein n=1 Tax=Guillardia theta (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:1660504..1661819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151669|gw1.1.335.1
BRITEko00000,ko00001,ko01000
KEGG rclassRC00002
KEGG ReactionR01667,R01668
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG koko:K16904
EC3.6.1.12
DescriptionMazG-like family
COG categoryS
Max annot lvl3041|Chlorophyta
EggNOG OGsCOG1694@1|root,2S210@2759|Eukaryota,37UWM@33090|Viridiplantae,34MAP@3041|Chlorophyta
Evalue5.12e-25
Seed ortholog38833.XP_003061319.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNTP pyrophosphohydrolase MazG, putative catalytic core
Ec32 orthologEc-03_003290.1
TranscriptId151991
TrackFilteredModels1
ProteinId151669
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151669gene_1146Tribonema minus UTEX_B_3156 geneContig_1 1660504..1661819 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1146_1exon_1146_1Tribonema minus UTEX_B_3156 exonContig_1 1660504..1660616 +
exon_1146_2exon_1146_2Tribonema minus UTEX_B_3156 exonContig_1 1661678..1661819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1146CDS_1146Tribonema minus UTEX_B_3156 CDSContig_1 1660504..1660616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151669Trimin1|151669|gw1.1.335.1Tribonema minus UTEX_B_3156 polypeptideContig_1 1660504..1661819 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1146 ID=mRNA_1146|Name=jgi.p|Trimin1|151669|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=255bp|location=Sequence derived from alignment at Contig_1:1660504..1661819+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCGAAGCGGGCGAGCTGTGCGAGTGCTTCCTGTGGCGCGGCGAGGACGA
CTGCGCGCCCGGCCTGCGCGCGTGGACGGACGAGCAGCGCGACCACCTGG
CGCAAGGCGAGTCCGACGTGGTCATCTACCTCATGCGGCTGTCGGACCGC
TGCGGCGTCGACCTCGCGCGCGCGTTCGCGGCCAAGATGCGCCGCAACGC
CGCCAAGTACCCCGCGCACCTGGCGCGCGGCCGCGCCAACAAGTACACGG
ACTAC
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protein sequence of jgi.p|Trimin1|151669

>Trimin1|151669|gw1.1.335.1 ID=Trimin1|151669|gw1.1.335.1|Name=jgi.p|Trimin1|151669|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=85bp
GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDR
CGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY
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mRNA from alignment at Contig_1:1660504..1661819+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1146 ID=mRNA_1146|Name=jgi.p|Trimin1|151669|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1316bp|location=Sequence derived from alignment at Contig_1:1660504..1661819+ (Tribonema minus UTEX_B_3156 )
GGCGAAGCGGGCGAGCTGTGCGAGTGCTTCCTGTGGCGCGGCGAGGACGA CTGCGCGCCCGGCCTGCGCGCGTGGACGGACGAGCAGCGCGACCACCTGG CGCAAGGCGAGTCGTCAAGTCAAAGCCGTTAACTGTAATCATCGACGGTA ACTGCAGCGCCGCTTCCCCCGACTAGTACCACTCATACCTACTGTGGTGA TTGCTGCTGACACGCACAGCGAGTCGTCAAGGCGTCAACCCTAGTCATTG GCGCTAACAGCAACGCTCTTGACCCTGACTAGTACCCGCTCATGCCTACT GTGGTGATTGCCGCTGATGCGTACTGCGTGACGAGCAGCGCGACCACCTG GCGCAAGGCGAGTCGCTGCTGAACCGTAGTGTCGGCATCGAGCCTAGCCA TGGGTGCTGAGCCCAATTGTGGCCGCTATTTCTTGCTATCAGCATAGGTA TGCTCTTATATGCACACCACCGCTCATCACGGCGGTTGCCACTCAGTTCA TCCCTGTCCTGAAGTGAGCCGTATCTTAGCGCCAACTGTTGACTTTCACC CTACCCCTAACCCTCGAGGCAGGGGAAGTAACCCTAGCCTTAACCCTCAC CTGACTCAGACTGTCAGACTAGCTCCAACGCTTGTGCGTGGTTGCCTCTG TTGCCGGTGGGGTCGCCGCTCGGTCATCGGCGGTCTATTGATACGTTAGC ATACTACATGCACAGTCTGTGTGACGCAGAGCTGTACTGCTATGCTACTT GAGTACATGTGTTCATGTACAAAGCTTACAAAATGAAGCTCAGAATCAAG TCGGCAACCCCAACTTTCGCCGCCGACCCTGACCCTTGCACACAGCTGAG TATACGCTAGCGTTGCCACTCATTCACTGGCGGTGTCTGACACGTTCATG TGCTGCAACATAATTTCCCAAGGCACCGACTACATCACTTCAACTTTGAA GCTCGCACAGGGTGACCACCTGTGATGGCCTTGATGCCACAGCCGCACCT TGCATTCGCTCAGATGCCACCTCGACCTCCTTTAGTGTCCTCATGACCGC TCAGCGATCCACAGTCAGGGTCGCCCAAATGCCGCAACCCAAGACTGACC GTGACACTAATTGTAGCTCTGACCCTACCCCTACCCCCCAATCCCCCCCC TCACCCCCAATGCTCAGAGATCAGCGACGTGGTCATCTACCTCATGCGGC TGTCGGACCGCTGCGGCGTCGACCTCGCGCGCGCGTTCGCGGCCAAGATG CGCCGCAACGCCGCCAAGTACCCCGCGCACCTGGCGCGCGGCCGCGCCAA CAAGTACACGGACTAC
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Coding sequence (CDS) from alignment at Contig_1:1660504..1661819+

>mRNA_1146 ID=mRNA_1146|Name=jgi.p|Trimin1|151669|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=255bp|location=Sequence derived from alignment at Contig_1:1660504..1661819+ (Tribonema minus UTEX_B_3156 )
GGCGAAGCGGGCGAGCTGTGCGAGTGCTTCCTGTGGCGCGGCGAGGACGA
CTGCGCGCCCGGCCTGCGCGCGTGGACGGACGAGCAGCGCGACCACCTGG
CGCAAGGCGAGTCCGACGTGGTCATCTACCTCATGCGGCTGTCGGACCGC
TGCGGCGTCGACCTCGCGCGCGCGTTCGCGGCCAAGATGCGCCGCAACGC
CGCCAAGTACCCCGCGCACCTGGCGCGCGGCCGCGCCAACAAGTACACGG
ACTAC
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