mRNA_1146 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: A0A836CNI8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNI8_9STRA) HSP 1 Score: 181 bits (458), Expect = 6.800e-58 Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1
Query: 1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 255
GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY
Sbjct: 1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 85
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: A0A7S3RKS5_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RKS5_9SPIT) HSP 1 Score: 108 bits (269), Expect = 7.170e-28 Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 1
Query: 1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 255
GE GEL ECF W+ + CAPGL W++ +R HL + +DV++YL+RL+DRC +DL RA AK+ RNA KYPAHL +G A KYT Y
Sbjct: 98 GEVGELSECFQWKSDASCAPGLPEWSEAERLHLGEEIADVMLYLVRLADRCAIDLPRAVIAKLERNAQKYPAHLCKGSAAKYTAY 182
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: A0A5J4YZL8_PORPP (dCTP pyrophosphatase 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZL8_PORPP) HSP 1 Score: 103 bits (256), Expect = 2.210e-26 Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 1
Query: 1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYT 249
GE GEL E F W+G+ C PGL W+D +R+HL + SDV+IYL+RL+DRCGV LA A K +NA KYPA ARG A KYT
Sbjct: 49 GEVGELAELFQWKGDAGCGPGLPGWSDAEREHLGEEMSDVLIYLIRLADRCGVSLAEAVRLKFEKNALKYPAEHARGSAAKYT 131
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: R1ECV0_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ECV0_EMIHU) HSP 1 Score: 98.2 bits (243), Expect = 7.000e-25 Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYP 213
GE GELCECF WRG+ CAPGL WTD R HL + +DV++YL+RL+DR G+DL A AAK+ RN KYP
Sbjct: 33 GEVGELCECFQWRGDAACAPGLPGWTDADRTHLGEEMADVLMYLVRLADRSGIDLPAACAAKLERNGQKYP 103
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: W4G3E3_9STRA (dCTP pyrophosphatase 1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G3E3_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.170e-24 Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 1
Query: 1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 255
GE GE+CECF WRG+D + W+ E ++HL + SDV+IYL+RL+DRC +DLA A KM +NA KYPA+LA+G + KYT Y
Sbjct: 77 GEVGEVCECFQWRGDD--GQDVDGWSAEDKEHLGEELSDVLIYLVRLADRCNIDLATAALRKMDKNAIKYPANLAKGSSQKYTAY 159
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: E1ZA40_CHLVA (Uncharacterized protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZA40_CHLVA) HSP 1 Score: 98.2 bits (243), Expect = 1.230e-24 Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 1
Query: 1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 255
GEAGEL ECF W+GE PGL ++ E+R + + SDV++YL+RLSD CG+DLA A AAK+R+NAAKYPA RG + KYT Y
Sbjct: 32 GEAGELAECFQWKGE--VLPGLPGFSAEERQLIGEELSDVLLYLVRLSDACGIDLAAAAAAKLRKNAAKYPADRCRGSSAKYTRY 114
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: C1N020_MICPC (Xtp3a-related NTP pyrophosphatase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N020_MICPC) HSP 1 Score: 103 bits (258), Expect = 3.120e-24 Identity = 51/85 (60.00%), Postives = 60/85 (70.59%), Query Frame = 1
Query: 1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 255
GE GE+ E F WRG+DDCA GL +W+ E R L +DV +YL+RL+DRCGVDLA A AKM +NAAKYPA RG A KYT Y
Sbjct: 198 GEVGEVSELFQWRGDDDCATGLPSWSREDRARLEDELADVQLYLVRLADRCGVDLAAATRAKMAKNAAKYPADRCRGSAAKYTAY 282
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: A0A6G0WE78_9STRA (dCTP pyrophosphatase 1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WE78_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.720e-23 Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 255
GE GE+CECF WRG+ D + W+ E ++HL + SDV+IYL+RL+DRC VDL A K+ +NA KYP LA+G + KYT+Y
Sbjct: 46 GEVGEVCECFQWRGDHD--QDVDKWSAEDKEHLGEELSDVLIYLIRLADRCNVDLPAAALRKIEKNAVKYPVDLAKGSSKKYTEY 128
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: A0A024TDT0_9STRA (dCTP pyrophosphatase 1 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TDT0_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 2.370e-23 Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 1
Query: 1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 255
GE GE+CECF WR +D + WT E ++HL + SDV+IYL+RL+DRC +DL A KM +NA KYPA LA+G + KYT Y
Sbjct: 59 GEVGEVCECFQWRNDD--GQDVDTWTAEDKEHLGEELSDVLIYLVRLADRCNIDLPTAALRKMEKNAIKYPAKLAKGSSLKYTAY 141
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Match: L1IV90_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IV90_GUITC) HSP 1 Score: 97.4 bits (241), Expect = 2.700e-23 Identity = 44/85 (51.76%), Postives = 60/85 (70.59%), Query Frame = 1
Query: 1 GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRCGVDLARAFAAKMRRNAAKYPAHLARGRANKYTDY 255
GE GELCECF W+ + PGL +W+ E+R H+ + SDV++YL+RL+DRC VDL+ A AK+ +N KYPA L +G + KYT Y
Sbjct: 131 GEVGELCECFQWKRDCGANPGLPSWSAEERVHVGEEMSDVLLYLIRLADRCEVDLSTAVLAKIEKNGKKYPASLVKGSSAKYTAY 215 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151669 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1146 ID=mRNA_1146|Name=jgi.p|Trimin1|151669|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=255bp|location=Sequence derived from alignment at Contig_1:1660504..1661819+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCGAAGCGGGCGAGCTGTGCGAGTGCTTCCTGTGGCGCGGCGAGGACGAback to top protein sequence of jgi.p|Trimin1|151669 >Trimin1|151669|gw1.1.335.1 ID=Trimin1|151669|gw1.1.335.1|Name=jgi.p|Trimin1|151669|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=85bp GEAGELCECFLWRGEDDCAPGLRAWTDEQRDHLAQGESDVVIYLMRLSDRback to top mRNA from alignment at Contig_1:1660504..1661819+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1146 ID=mRNA_1146|Name=jgi.p|Trimin1|151669|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1316bp|location=Sequence derived from alignment at Contig_1:1660504..1661819+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_1:1660504..1661819+ >mRNA_1146 ID=mRNA_1146|Name=jgi.p|Trimin1|151669|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=255bp|location=Sequence derived from alignment at Contig_1:1660504..1661819+ (Tribonema minus UTEX_B_3156 )back to top |