mRNA_11444 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|338261
Unique NamemRNA_11444
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|338261 vs. uniprot
Match: A0A835YS42_9STRA (Signal peptide peptidase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS42_9STRA)

HSP 1 Score: 505 bits (1301), Expect = 1.570e-180
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 1 
Query:    1 GVGASLLAAALPEALRERRVRVPRWLQDAIADPADQDERGVRLPAVAALAVATAGAAAYLYPGADLHGTFMVSNALAWCIGMQAIGLITIQSFLTACVFLGGLFLYDIYWVFGTDVMLTVATRFEAPVKFIFPLPADVERAYPFAVLGLGDIVIPAIVISLLRNLDKSLAERDAGRAGTKVSYFHAGVAAYAMGLAACFVANTLSKSGQPALLYLNPAVIGSALIVAAVNGGEFRELFDFTQESTLPQPVAVRPMATKQKKEQPK 795
            GVGASLLAAALPEALRERRVRVPRWLQDAIADPADQDERGVRLPAVAALAVATAGAAAYLYPGADLHGTFMVSNALAWCIGMQAIGLITIQSFLTACVFLGGLFLYDIYWVFGTDVMLTVATRFEAPVKFIFPLPADVERAYPFAVLGLGDIVIPAIVISLLRNLDKSLAERDAGRAGTKVSYFHAGVAAYAMGLAACFVANTLSKSGQPALLYLNPAVIGSALIVAAVNGGEFRELFDFTQESTLPQPVAVRPMATKQKKEQPK
Sbjct:    1 GVGASLLAAALPEALRERRVRVPRWLQDAIADPADQDERGVRLPAVAALAVATAGAAAYLYPGADLHGTFMVSNALAWCIGMQAIGLITIQSFLTACVFLGGLFLYDIYWVFGTDVMLTVATRFEAPVKFIFPLPADVERAYPFAVLGLGDIVIPAIVISLLRNLDKSLAERDAGRAGTKVSYFHAGVAAYAMGLAACFVANTLSKSGQPALLYLNPAVIGSALIVAAVNGGEFRELFDFTQESTLPQPVAVRPMATKQKKEQPK 265
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BLAST of jgi.p|Trimin1|338261 vs. uniprot
Match: A0A7S1Z2G9_TRICV (Hypothetical protein (Fragment) n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2G9_TRICV)

HSP 1 Score: 194 bits (493), Expect = 2.080e-56
Identity = 116/245 (47.35%), Postives = 156/245 (63.67%), Query Frame = 1 
Query:    4 VGASLLAAALPEALRERRVRVPRWLQDAI--ADPADQDERGVRLPAVAALAVATAGAAAYLYPGADLHGTFMVSNALAWCIGMQAIGLITIQSFLTACVFLGGLFLYDIYWVFGTDVMLTVATRFEAPVKFIFPLPADVE-RAYPFAVLGLGDIVIPAIVISLLRNLDKSLAERDAGRAGTKVSYFHAGVAAYAMGLAACFVANTLSKSGQPALLYLNPAVIGSALIVAAVNGGEFRELFDFTQE 729
            VG  +L   LPE+  E  V VP  L  AI  A P       + +  +A LA+  A +AAY  P A +   F+VSNA+AW I M ++G I++ SF TA + L GLF YDI+WVFGTDVM+TVAT+ EAPVKF++  P   E + YPF+VLGLGD+VIP + +  +  +D++L  +         SYF A  AAYA+GL ACF  N ++ +GQPALLYL+PA IGSAL V A NG +  E+++F +E
Sbjct:  144 VGVPILRNVLPESFAEAEVEVPEKLAKAIKLAPPT------LPVDGLATLALGAALSAAYWAPVA-MSQKFLVSNAIAWAIAMTSLGAISLGSFQTAAILLAGLFCYDIFWVFGTDVMMTVATKVEAPVKFLYASPPSAEPKPYPFSVLGLGDVVIPGLFVRFMARMDEALQPQ-------VFSYFTAATAAYALGLTACFAVNEITHAGQPALLYLDPACIGSALAVGAANG-QLGEVWNFEEE 373
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BLAST of jgi.p|Trimin1|338261 vs. uniprot
Match: A0A6U0R1W4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0R1W4_9STRA)

HSP 1 Score: 192 bits (489), Expect = 2.650e-55
Identity = 107/242 (44.21%), Postives = 157/242 (64.88%), Query Frame = 1 
Query:    4 VGASLLAAALPEALRERRVRVPRWLQDAIADPADQDERGVRLPAVAALAVATAGAAAYLYPGADLHGTFMVSNALAWCIGMQAIGLITIQSFLTACVFLGGLFLYDIYWVFGTDVMLTVATRFEAPVKFIFPLP-ADVERAYPFAVLGLGDIVIPAIVISLLRNLDKSLAERDAGRAGTKVSYFHAGVAAYAMGLAACFVANTLSKSGQPALLYLNPAVIGSALIVAAVNGGEFRELFDFTQ 726
            +G  +L   LP +  E+ V+VP+     IA   + D   + L  +  L +     A Y  P A +   F++SN +AW + M ++G I++ SF TA + L GLF YDI+WVFGT+VM+TVAT+ EAP+KF++P P +++ERAYPF+VLGLGD+VIP + + L+  +D+ L  +         SYF A  AAYA+GL+ACFV N ++++GQPALLYLNPA IGSAL+   +NG +  E+ +F +
Sbjct:  191 IGVPILRNILPPSFSEKEVQVPK----DIAQKLELDPPTLPLDGLVTLGLGLLCTAIYWAPVA-MEQKFILSNIIAWALAMISLGSISLGSFQTAVILLTGLFCYDIFWVFGTEVMMTVATKVEAPIKFLYPAPPSEIERAYPFSVLGLGDVVIPGLFVRLMTKVDQDLKPK-------VFSYFSAATAAYALGLSACFVVNEITQAGQPALLYLNPACIGSALVCGVING-QLDEIINFEE 419
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BLAST of jgi.p|Trimin1|338261 vs. uniprot
Match: A0A7S4IZL8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IZL8_9STRA)

HSP 1 Score: 181 bits (459), Expect = 4.500e-50
Identity = 106/253 (41.90%), Postives = 156/253 (61.66%), Query Frame = 1 
Query:    4 VGASLLAAALPEALRERRVRVPRWLQDAIADPADQDERGVRLPAVAALAVATAGAAAYLYPGADLHGTFMVSNALAWCIGMQAIGLITIQSFLTACVFLGGLFLYDIYWVFGTDVMLTVATRFEAPVKFIFPLPADVE--RAYPFAVLGLGDIVIPAIVISLLRNLDKSLAERDAGRAGTKVSYFHAGVAAYAMGLAACFVANTLSKSGQPALLYLNPAVIGSALIVAAVNGGEFRELFDFTQESTLPQPVAV 756
            VG  LL   +P++  +  V VP    + +A+    +   + +  +  LA+      AY  P A +   FMVSN +AW + M ++G I++ SF T  + L GLF YDI+WVFGTDVM+TVAT+ EAPVKF++  P ++   ++YPF+VLGLGD+VIP + +  +  +D++L            SYF A  AAYA+GLA+CFV N ++ +GQPALLYL+PA +GSAL V A NG +  E+++F +E    +P  V
Sbjct:  270 VGVPLLRNVVPDSFAKGEVEVP----EPLAEKLKLNPPTLPVDGLTTLALGIVCTLAYWSPVA-MTQKFMVSNIIAWSLAMTSLGAISLGSFQTGAILLAGLFCYDIFWVFGTDVMMTVATKVEAPVKFLYANPPELAEGKSYPFSVLGLGDVVIPGLFVRFMSKVDEALKPAVG-------SYFTAATAAYAVGLASCFVVNEITHAGQPALLYLDPACVGSALAVGAANG-QLSEVWNFEEERPEAEPEEV 509
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BLAST of jgi.p|Trimin1|338261 vs. uniprot
Match: A0A6H5KXB8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXB8_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 3.310e-49
Identity = 112/257 (43.58%), Postives = 139/257 (54.09%), Query Frame = 1 
Query:  136 VAALAVATAGAAAYLYPGADLHGTFMVSNALAWCIGMQAIGLITIQSFLTACVFLGGLFLYDIYWVFGTDVMLTVATRFEAPVKFIFPLPADVERAYPFAVLGLGDIVIPAIVISLLRNLDKSL-----AERDAGRA-------------------GTKV-------------------------------------SYFHAGVAAYAMGLAACFVANTLSKSGQPALLYLNPAVIGSALIVAAVNG-GEFRELFDF 720
            +A L  A + A  Y+ P   L   F++ N  AWCIGMQ+IGLI+I +F  A + L GLF YDI+WVFGT+VM+TVAT+ EAPVKF+FP   D  + YPF+VLGLGDIVIPA   +L+R+ D  L     AE  A RA                   GT V                                     SYF   VAAYA+GL  CF  N +SKSGQPALLYLNPA++ SA++ A +NG GE  +L  F
Sbjct:  248 LAVLVSAISAAFVYINPSVGLSAKFLIPNVFAWCIGMQSIGLISISTFPAAAILLTGLFCYDIFWVFGTEVMMTVATKIEAPVKFLFPSLTDPSKRYPFSVLGLGDIVIPATFCTLMRSFDIYLEGARQAEAAAARALLTEVGNKNPIALWLDSILGTPVAQAGSGVSEASPKGIPPGGRLAAAGVAGAVGEAGGGRSYFDNSVAAYAIGLGLCFTVNFVSKSGQPALLYLNPALLSSAILTAVLNGNGELGKLLAF 504
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BLAST of jgi.p|Trimin1|338261 vs. uniprot
Match: A0A7S2MA48_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2MA48_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.740e-45
Identity = 85/180 (47.22%), Postives = 121/180 (67.22%), Query Frame = 1 
Query:  196 LHGTFMVSNALAWCIGMQAIGLITIQSFLTACVFLGGLFLYDIYWVFGTDVMLTVATRFEAPVKFIFPLP-ADVERAYPFAVLGLGDIVIPAIVISLLRNLDKSLAERDAGRAGTKVSYFHAGVAAYAMGLAACFVANTLSKSGQPALLYLNPAVIGSALIVAAVNGGEFRELFDFTQES 732
            L   F++SNA+AW +GM ++G        T  + L GLF YDI+WVFGTDVM+TVAT+ EAPVKF++  P +D  + YPF+VLGLGD+VIP + +  +  +D+ L  ++       +SYF     AY  GLAACF AN + ++GQPALLYL+P+++GSAL  AAVN  +  E+++F + S
Sbjct:  242 LENKFLISNAIAWALGMVSLGXXXXXXXQTGAILLAGLFCYDIFWVFGTDVMMTVATKVEAPVKFLYTAPPSDTPKDYPFSVLGLGDVVIPGLFVRFMAKVDEVLQPKN-------LSYFTTATFAYGAGLAACFGANEMFQNGQPALLYLDPSLVGSALACAAVNN-QLSEVWEFEESS 413
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BLAST of jgi.p|Trimin1|338261 vs. uniprot
Match: K0SK77_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SK77_THAOC)

HSP 1 Score: 159 bits (402), Expect = 8.980e-43
Identity = 85/174 (48.85%), Postives = 114/174 (65.52%), Query Frame = 1 
Query:  208 FMVSNALAWCIGMQAIGLITIQSFLTACVFLGGLFLYDIYWVFGTDVMLTVATRFEAPVKFIFPLPADVERAYPFAVLGLGDIVIPAIVISLLRNLDKSLAERDAGRAGTKVSYFHAGVAAYAMGLAACFVANTLSKSGQPALLYLNPAVIGSALIVAAVNGGEFRELFDFTQE 729
            F+ SN LAW +GM +               LGGLF YD +WVFG+DVM+TVAT+ EAPVKFIFP  AD  R Y F+VLGLGD+VIP + + L+   D++L   +        SYF+  V AYA GL ACF AN + ++GQPAL+YL+P+++GSAL  A+ NG +  +L+DF +E
Sbjct:  226 FIASNILAWSLGMASXXXXXXXXXXXXXXXLGGLFFYDAFWVFGSDVMMTVATKVEAPVKFIFP--ADTVRDYNFSVLGLGDLVIPGLFVRLMAKADEALNPEN-------FSYFNTAVLAYAFGLGACFTANAIFQNGQPALIYLDPSLVGSALACASANG-QVAQLWDFQEE 389
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BLAST of jgi.p|Trimin1|338261 vs. uniprot
Match: A0A7S1XEF9_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XEF9_9RHOD)

HSP 1 Score: 149 bits (376), Expect = 3.880e-39
Identity = 85/181 (46.96%), Postives = 113/181 (62.43%), Query Frame = 1 
Query:  208 FMVSNALAWCIGMQAIGLITIQSFLTACVFLGGLFLYDIYWVFGTDVMLTVATRFEAPVKFIFPLP----ADVERAYPFAVLGLGDIVIPAIVISLLRNLDKSLAERDAGRAGTKVS---YFHAGVAAYAMGLAACFVANTLSKSGQPALLYLNPAVIGSALIVAAVNGGEFRELFDFTQE 729
            F+++N LAW I  + I LI   SFL A   L GLFLYD++WVFGTDVM+TVA   +AP KF+FP      AD    YP+AVLGLGDIV+P++  SL   +DK +  + +  A   V    YF A   AY +GL   FVANTL+   QPAL YL P+++GS+L+ AA+ G E + +  F  +
Sbjct:  176 FLLNNILAWGIAARTISLIQPSSFLVAAGLLTGLFLYDVFWVFGTDVMVTVAMAIDAPAKFLFPRDLSSYADPSSVYPYAVLGLGDIVVPSLFASLALTIDKRIVYQTSPSAIGHVPSGPYFRASFIAYFVGLGLTFVANTLTSHAQPALFYLVPSLLGSSLLTAAMRG-EMKSIVAFQND 355
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BLAST of jgi.p|Trimin1|338261 vs. uniprot
Match: A0A7S3T9S7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T9S7_EMIHU)

HSP 1 Score: 141 bits (356), Expect = 1.790e-37
Identity = 95/224 (42.41%), Postives = 129/224 (57.59%), Query Frame = 1 
Query:   97 PADQDERGVRLPAVAALAVATAGAAAYLYPGADLHGTFMV------SNALAWCIGMQAIGLITIQSFLTACVFLGGLFLYDIYWVFGTDVMLTVATRFEAPVKFIFPLP---ADVERAYPFAVLGLGDIVIPAIVISLLRNLDKSLAERDAGRAG-------TKVSYFHAGVAAYAMGLAACFVANTLSKSGQPALLYLNPAVIGSALIVAAVNGGEFRELFDF 720
            PAD         A  A AV+ A  AAYL       G   +      +++L + I M ++G+I ++SF  A   L GLF YD ++VF +DVMLTVAT+ EAP KF++      AD    YPF+VLGLGD+V+P   + LLR LDK     + GRAG        + SYF  G+ AYA GL + F AN L+KSGQPAL+Y+ P+++ SA+  AA + GE   L +F
Sbjct:    3 PADVSRTCPATGAAPAFAVSLAVVAAYLQGPLSTGGPLSLPAFAALNDSLGFGIVMTSLGVIALESFAAAAALLLGLFCYDAFFVFKSDVMLTVATQIEAPAKFLWAAVGAGADAGSRYPFSVLGLGDVVVPGAFVGLLRELDK-----EQGRAGGGSEEEAREASYFQVGLGAYAAGLLSTFAANYLTKSGQPALVYIVPSLLLSAVATAA-SRGELPSLLEF 220
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BLAST of jgi.p|Trimin1|338261 vs. uniprot
Match: A0A7S4NNE3_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NNE3_9EUKA)

HSP 1 Score: 141 bits (356), Expect = 2.280e-36
Identity = 82/179 (45.81%), Postives = 112/179 (62.57%), Query Frame = 1 
Query:  208 FMVSNALAWCIGMQAIGLITIQSFLTACVFLGGLFLYDIYWVFGTDVMLTVATRFEAPVKFIFPLPADVERA-YPFAVLGLGDIVIPAIVISLLRNLDKSLA----ERDAGRAGTKVSYFHAGVAAYAMGLAACFVANTLSKSGQPALLYLNPAVIGSALIVAAVNGGEFRELFDFTQE 729
            ++V+N L +   +QAI ++ + S+   C+ LGGLFLYDI+WVFGTDVM+TVA  F+APVK +FP   D+  A Y FA+LGLGDIVIP + ++LL   D  LA     +   +A    ++FH    AY +GLA         ++ QPALLYL P VIG++LI A V G +  EL  F +E
Sbjct:  174 WIVNNILGFAFSLQAISMLNLGSYRIGCILLGGLFLYDIFWVFGTDVMVTVARSFDAPVKLLFP--KDIFAAEYQFAMLGLGDIVIPGVFVALLLRFDAHLAGFKKSQKMEKASFPQTFFHVNCVAYILGLATTIGVMHFFQAAQPALLYLVPYVIGASLITAVVKG-KLGELLMFEEE 349
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|338261 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YS42_9STRA1.570e-180100.00Signal peptide peptidase-domain-containing protein... [more]
A0A7S1Z2G9_TRICV2.080e-5647.35Hypothetical protein (Fragment) n=2 Tax=Trieres ch... [more]
A0A6U0R1W4_9STRA2.650e-5544.21Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S4IZL8_9STRA4.500e-5041.90Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6H5KXB8_9PHAE3.310e-4943.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2MA48_9STRA1.740e-4547.22Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K0SK77_THAOC8.980e-4348.85Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S1XEF9_9RHOD3.880e-3946.96Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S3T9S7_EMIHU1.790e-3742.41Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S4NNE3_9EUKA2.280e-3645.81Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_90contigContig_90:373816..378226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|338261|MIX47024_8_38
BRITEko00000,ko01000,ko01002
KEGG koko:K09595
Descriptionaspartic endopeptidase activity, intramembrane cleaving
COG categoryC
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2443@1|root,KOG2443@2759|Eukaryota
Evalue1.81e-51
Seed ortholog2880.D7FRJ3
Hectar predicted targeting categoryother localisation
TranscriptId338583
TrackFilteredModels1
ProteinId338261
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|338261gene_11444Tribonema minus UTEX_B_3156 geneContig_90 373816..378226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|338261Trimin1|338261|MIX47024_8_38Tribonema minus UTEX_B_3156 polypeptideContig_90 373816..378226 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11444_1exon_11444_1Tribonema minus UTEX_B_3156 exonContig_90 373816..373923 +
exon_11444_2exon_11444_2Tribonema minus UTEX_B_3156 exonContig_90 375089..375151 +
exon_11444_3exon_11444_3Tribonema minus UTEX_B_3156 exonContig_90 375670..375977 +
exon_11444_4exon_11444_4Tribonema minus UTEX_B_3156 exonContig_90 377238..377413 +
exon_11444_5exon_11444_5Tribonema minus UTEX_B_3156 exonContig_90 378084..378226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11444CDS_11444Tribonema minus UTEX_B_3156 CDSContig_90 373816..373923 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11444 ID=mRNA_11444|Name=jgi.p|Trimin1|338261|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=798bp|location=Sequence derived from alignment at Contig_90:373816..378226+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCGTCGGAGCGTCGCTGCTCGCTGCCGCGCTGCCGGAGGCGCTGCGCGA
GCGCCGCGTGCGCGTGCCGCGCTGGCTGCAGGACGCCATCGCGGACCCGG
CGGACCAGGATGAGAGGGGCGTGCGGCTGCCGGCCGTGGCGGCACTGGCC
GTGGCGACGGCAGGCGCAGCGGCGTACCTCTACCCCGGCGCCGATCTGCA
CGGCACCTTCATGGTCTCCAACGCGCTCGCGTGGTGCATCGGCATGCAGG
CGATAGGCCTCATCACGATACAGTCGTTCCTCACGGCGTGCGTCTTCCTC
GGCGGCCTCTTCCTGTACGACATCTACTGGGTCTTCGGGACGGACGTCAT
GCTGACCGTCGCGACTCGCTTCGAGGCGCCCGTCAAGTTCATCTTCCCGC
TGCCTGCGGACGTCGAGCGCGCGTACCCGTTCGCCGTGCTCGGCCTCGGG
GACATTGTCATTCCCGCCATCGTCATCAGCCTGCTGCGGAACCTGGACAA
GTCGCTCGCGGAGCGCGACGCGGGCCGCGCCGGCACCAAGGTCTCGTACT
TCCACGCGGGCGTCGCGGCGTACGCCATGGGGCTCGCGGCGTGCTTTGTG
GCCAACACGCTCAGCAAGAGCGGCCAGCCAGCGCTGCTGTACCTCAACCC
GGCAGTCATCGGCAGCGCGCTGATCGTGGCGGCGGTCAACGGCGGCGAGT
TCCGCGAGCTGTTCGACTTCACGCAGGAGAGCACGCTGCCGCAGCCCGTC
GCCGTCCGCCCGATGGCCACCAAGCAGAAGAAGGAGCAGCCAAAATAA
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protein sequence of jgi.p|Trimin1|338261

>Trimin1|338261|MIX47024_8_38 ID=Trimin1|338261|MIX47024_8_38|Name=jgi.p|Trimin1|338261|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=266bp
GVGASLLAAALPEALRERRVRVPRWLQDAIADPADQDERGVRLPAVAALA
VATAGAAAYLYPGADLHGTFMVSNALAWCIGMQAIGLITIQSFLTACVFL
GGLFLYDIYWVFGTDVMLTVATRFEAPVKFIFPLPADVERAYPFAVLGLG
DIVIPAIVISLLRNLDKSLAERDAGRAGTKVSYFHAGVAAYAMGLAACFV
ANTLSKSGQPALLYLNPAVIGSALIVAAVNGGEFRELFDFTQESTLPQPV
AVRPMATKQKKEQPK*
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mRNA from alignment at Contig_90:373816..378226+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11444 ID=mRNA_11444|Name=jgi.p|Trimin1|338261|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4411bp|location=Sequence derived from alignment at Contig_90:373816..378226+ (Tribonema minus UTEX_B_3156 )
GGCGTCGGAGCGTCGCTGCTCGCTGCCGCGCTGCCGGAGGCGCTGCGCGA
GCGCCGCGTGCGCGTGCCGCGCTGGCTGCAGGACGCCATCGCGGACCCGG
CGGACCAGGTGCGCGCCGCGGCTGCGCAGCGCCAGAGCGTCGTTTTTGCG
GGGTGTATGCATGTATCGGGGTACATGGAGTATAGGCACCTCTGAAGTGT
AGTGTATAGGACCCGGCGCGCCAGGCGCGTGTTCGCTGCGCGGCGCTGCG
AGAGTGTGTGCTCTGAGGTGTACGCAACGTGTAGTGACGCATGCATACGG
GTATGCACGCTGCTGAAGTATAGTGTGTGTGGATGTGGTGTGTATGCATG
TGCGCGTGCCACGCTGGCTGTGGGGCGCCATCGCGGACCCGGCAGACGAG
GTGCGCGCCGCTGCTGCGTAGCGCTGGAGAGTCATGTTTTTGGGAGGTAT
ATGCATGTATTGGAGTACATGGAGTATAGGCACCTCTGAAGTGTAGTGTA
TACATGCCGTATCATGCGGTCGTGCGCATGCGCGCAGAGCGCTTGCGCGA
GTCGCAGGAGCAGCGCACATGCACGCTGATTCGGCGAGAGAGCCGCGAAG
GCGCCCGCACGCCGTGCGAGGGAACGCGCGCGATGTCTGCGGTGCCGGAT
GCTGTTAGAATCGGGATTAGGGATAGGGTTTGGTTCACGCGTTCGTGCAA
GTGCGTGCGTGCGTGCACGTACCTGCGTGTCTCCGCACCCAGTGCTCCGC
GCACCTCGCGCACCCGCCGAAGCTCGCGTGCAGCGCACGTGATCCATCAC
TACTGCAGCGCTCAGCTCTGGCGGCGCGCGCCGGATCGACTGGCGCGTGT
CGCCAGCCGTCTGGCGCGCAAAGTTCACTTGTGAAGTTTTGTTTTGGAAT
GGCACTGTGCACCGCGCTCGCTGACGGTAGACCGTGCCGAATGCGCCACG
CGCTGCGCACGCGGCTGCACGAGGGCGGCGGGCGCGATGTAGGGTCAGCA
TTAAGATCACAGGCATGTAGGTAGGTTCGTGGGGACAGGGACAGGGGTAC
AATTTTACTTTTCGGCAGAGCGCTGCCGCGGCAGGGCATGGGCGTTGCAT
TGCTCAGCAAGGTCGATGAGCCTGCAGCGCGCATGCACGCCAACTCCAAA
GCTCCAAAGTTGCTGCATGAATTCGCAAGCGTCTGTTAGATTGCAAGCGT
TGTACGCTCCAGAGCAGGTGACCATGTTTGCTGACGCGGCTGCGGTGTGC
TGCGCTGCTGCTGCCCGTTGCAGGATGAGAGGGGCGTGCGGCTGCCGGCC
GTGGCGGCACTGGCCGTGGCGACGGCAGGCGCAGCGGTGAGCGGCAGAGA
TCATAGAATCGCCCTTGTCAGAACTTCAAGGTTATGCCAAAACTCCTAAC
TTGATGTTACAAGAGGTGACTCTTGATACTCCAAGACGGCAACGACAATT
TATGAAATGTTAACGCCAGTGTAGTTCAAACTTTCACAGAAGTGGGGCGA
CTGATCAGGCTGCGGGAACGGAAGGCGCAGCGCTCAGCAGCAGCAATCAC
ATGTTGCGAGGAGACAGTCATGTCTGTCATCAGGTCTGGGTTGAGTAGCA
ACTCAACTCTGATGTACTGCTGCAGTGACAGGCGGCGCACTTGCGCCCCC
CTGCGCAATTTCATCTGAGCAATTGCCCCCCCCCCCCCCCTACCTCACTC
TCATTGGCACGGGTTGCATGCGCGCTTTCAGCTGAGCGACTGCCCCCCCC
ATCTGCCCGCCCCCTCTCATTTGCGCGCGCTTTCATCTGAGCAGCCCCCC
CCCCCCCCCTTCCCTTCCCCCCTCCCCGCCCCCGCCCCCCTCGCGCGAGC
GCAGGCGTACCTCTACCCCGGCGCCGATCTGCACGGCACCTTCATGGTCT
CCAACGCGCTCGCGTGGTGCATCGGCATGCAGGCGATAGGCCTCATCACG
ATACAGTCGTTCCTCACGGCGTGCGTCTTCCTCGGCGGCCTCTTCCTGTA
CGACATCTACTGGGTCTTCGGGACGGACGTCATGCTGACCGTCGCGACTC
GCTTCGAGGCGCCCGTCAAGTTCATCTTCCCGCTGCCTGCGGACGTCGAG
CGCGCGTACCCGTTCGCCGTGCTCGGCCTCGGGGACATTGTCATTCCCGC
CATCGTCATCAGGTTCGTGGAAGCCTTGAAGCTTGAAGTTGAAGTTGATG
ATGAGGCTCATCTTCCTGCTGCCGGCGGACGTGGAGCGCGCGTACCCGTT
CGCCGTGCTCGGCCTCGGGGATATCGTCATCCCCGCCATTGTCACCAGGT
CTTTATGCCAGCATTTTGACCTGACTGCGCTTTGCGTGAGGTGTGTCAAC
TTTGTACTTCAACTTGATGTTGACGTCAAGATCAACTTTGCGCTGCCGGC
GGACGGCGAGCACGCGTACCCATTCGCGGTGCTCGGCCTCGGCGACATTG
TCATTCCCGCCATTGTCATCAGGTCCGTGTTGAGCACTGTCTTGAACCTA
GAGTTGAAGCTGGTGATGAGGCCATCGCCTTGGCTGCCAGCGGATGTTGA
GCGCGCGTGCACGTTCGCGGTGCTCGGCCTCGGGGACATTGTGACCGCTG
CCATCGGCATCACGTCCGTGTGTGGGCATTTTGAGACATGCAATGTGTCA
GCCTTGAACTTGGAGTTGAAGTGATGTTTAGGCTCTTTGCCCATGCTGCC
GGCAGAGCGCGCGCACCCGTTTGCCAATGTTTAGGCTCCTTTCTTTGCCC
ATGCTGCCGGCAGAGCACGCGTACCCATCGCCGTGCTCGGCTTCGGGGAC
ATTGTCTTTCCCGCCATCATCATCAGGTCCATTTGGAAGCCATCTGAGAC
ACGCATTGTGAGATGCATGCTTCAGCTTGAACTTGGAGTTGAAGCTGATG
TTCAGACTCATCTCCCTTGCTGCCGGCAGACTTCGAGCGCGCGTGCCCGC
TCGCTGCGCTTGGCCTTGGCGACATCGTCATCACAGCCATAGTCATCATG
TCCGAGTGGCGGCCTCGTGACACATTGTCAGCCTGAACTTGCACTTGATT
TTGACGTCAAGTTCACCGTCCCGATGCAAACAGACGCCGAGCGCATGTCA
CCCGTTTGCGGCGCTCGGCCTTGGGGACATCGTGATGTCCGCCAATGTCA
TTGGATCGGCGCGCGAGGCAGCCTCGGCCGCGACGCGTCGTACGTGGTGT
GTCAACCTCAAACTTGAACTTGCTGTGAGTGCGCGCCGCACGAAGCGCCA
CGTTTGCCGCGCCCACGCGTGCGCTCACAAAGCAGAGACGTCACGACAGC
GACCCTCGCTTGTGGCCCGACACTGACCCCACGCCTCCACTCCGCTGCCG
CCGCCGCTGCCGCCACCGCCGCTGCCGCTGCCGCCGCTGCTGCCGCCACC
GCTGCTGCCGCCCCGCGCGCAGCCTGCTGCGGAACCTGGACAAGTCGCTC
GCGGAGCGCGACGCGGGCCGCGCCGGCACCAAGGTCTCGTACTTCCACGC
GGGCGTCGCGGCGTACGCCATGGGGCTCGCGGCGTGCTTTGTGGCCAACA
CGCTCAGCAAGAGCGGCCAGCCAGCGCTGCTGTACCTCAACCCGGCAGGT
GTGTGCGAGAGTGGCTGAAAGCGCGCGTTGCGAGGGCGGTGAAGCGCTGC
TGCGAATGACGGCTCACGCGTGCGCACGCTGTGAAACGCTGCTGCGACTG
ACGTTTTTCGCGTGCATGCGCTGTCCGCAGCGCGGCGCGCAGTTTGCGGG
ACACACATACGGATGCTCTAAAATTACGTTTATGTCGTGGTCCGGTGCGC
TGCGGCAGATGCATTGCAGCAGCTGCGGCGGCGGTGCACCTCTACAGCAG
TCGCTGTGGGCGCTGCGCCGCGGTGTTTATTCCGGTGTCGAGTGTGGCAT
CGCTCAGCCTGCAGTATGCTAGCCGCGACCCCCGACTCGCTCGCGTCAGC
GCGGCGGCAGTGCGCGCATGCGCTCGTGCTAGCCCCAGCCCCCTGACCCC
CTCGCATGAAGCACCGCTGCGGCTCGGATCAGGTCCTCACCCGCAAGGCG
CCCTTCCGTGCTCGCCCGGGAGGGCGGGGCAGGGGTGCGCGCGCATGCGG
TCCTGCTGCAGCAGTGCTCAACGGCACGGGCTTTGGCTGCCGACGCACTT
GCAATGGCGTTGCTGCGCTGTGTGCGTTCCTCAACGCAGCAGATTCAGTT
TACTGCTCACAAACTCATGTACCCCGGCCTGTGCTGGCTGCTGCGCGCTG
CCGCCGCCCCCGCCGCAGTCATCGGCAGCGCGCTGATCGTGGCGGCGGTC
AACGGCGGCGAGTTCCGCGAGCTGTTCGACTTCACGCAGGAGAGCACGCT
GCCGCAGCCCGTCGCCGTCCGCCCGATGGCCACCAAGCAGAAGAAGGAGC
AGCCAAAATAA
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Coding sequence (CDS) from alignment at Contig_90:373816..378226+

>mRNA_11444 ID=mRNA_11444|Name=jgi.p|Trimin1|338261|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=798bp|location=Sequence derived from alignment at Contig_90:373816..378226+ (Tribonema minus UTEX_B_3156 )
GGCGTCGGAGCGTCGCTGCTCGCTGCCGCGCTGCCGGAGGCGCTGCGCGA
GCGCCGCGTGCGCGTGCCGCGCTGGCTGCAGGACGCCATCGCGGACCCGG
CGGACCAGGATGAGAGGGGCGTGCGGCTGCCGGCCGTGGCGGCACTGGCC
GTGGCGACGGCAGGCGCAGCGGCGTACCTCTACCCCGGCGCCGATCTGCA
CGGCACCTTCATGGTCTCCAACGCGCTCGCGTGGTGCATCGGCATGCAGG
CGATAGGCCTCATCACGATACAGTCGTTCCTCACGGCGTGCGTCTTCCTC
GGCGGCCTCTTCCTGTACGACATCTACTGGGTCTTCGGGACGGACGTCAT
GCTGACCGTCGCGACTCGCTTCGAGGCGCCCGTCAAGTTCATCTTCCCGC
TGCCTGCGGACGTCGAGCGCGCGTACCCGTTCGCCGTGCTCGGCCTCGGG
GACATTGTCATTCCCGCCATCGTCATCAGCCTGCTGCGGAACCTGGACAA
GTCGCTCGCGGAGCGCGACGCGGGCCGCGCCGGCACCAAGGTCTCGTACT
TCCACGCGGGCGTCGCGGCGTACGCCATGGGGCTCGCGGCGTGCTTTGTG
GCCAACACGCTCAGCAAGAGCGGCCAGCCAGCGCTGCTGTACCTCAACCC
GGCAGTCATCGGCAGCGCGCTGATCGTGGCGGCGGTCAACGGCGGCGAGT
TCCGCGAGCTGTTCGACTTCACGCAGGAGAGCACGCTGCCGCAGCCCGTC
GCCGTCCGCCCGATGGCCACCAAGCAGAAGAAGGAGCAGCCAAAATAA
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