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Homology
BLAST of jgi.p|Trimin1|338240 vs. uniprot
Match: A0A836C8N0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N0_9STRA) HSP 1 Score: 1129 bits (2921), Expect = 0.000e+0 Identity = 645/645 (100.00%), Postives = 645/645 (100.00%), Query Frame = 1
Query: 1 MSDGSVSYLRRGKDSFQQHLAGSYCERDLRDTTPHHALLVLPWNTCEVEGVATHTLKRFRSASPPAQRPALVPCTTSPSSHDMGSLRGRPRQRSFSDELAPEDEAEELLPGVFGMLTTRERHLLDIFLTHVNSFLPLVTEDILALPLLHEISGGDAPLGAAALDWQRAHARTALVWGCIANGAVMENDGAVMEYSRRSQSFLKECFDAPCTEAVSAHLAVSLFWGQFGENEKRKRYAQFAEMVMQEIEDVPPDLVSVLNYLKARPNIITQFASYWRAAIMCASDCAGADSSSAAAAGDPFSPHGHHRHAPRGGVPDPHAAAAAADDPHAPRRQVLDTLAFCLAALWRARTCSLVAGRPCAAVATLGPVAVIVAARPAAAAHALPWHAAHVAAAALHQRGHAAQYAQLRAALLPFQGKLPFTRASCPLPALPDDAAALDPRAWPPLCTRGAACRSVPCRLLARVWAAPASDDSDSDSSVPALQLPLKRQQXXXXXXXXXXXXXXXXXAQWPLDALFGGXXXXXXXXXXACDSPGLSPTSTRSLTSGDXXXXXXXXXXXXXXXXXERYAQNSLESPSAAEFGAAXXXXXXXXXXXSRLQRPPSPLPQRVAVSAAQQRAQYELCEAAALKRPAQRQRTLYLPFMGADI 1935
MSDGSVSYLRRGKDSFQQHLAGSYCERDLRDTTPHHALLVLPWNTCEVEGVATHTLKRFRSASPPAQRPALVPCTTSPSSHDMGSLRGRPRQRSFSDELAPEDEAEELLPGVFGMLTTRERHLLDIFLTHVNSFLPLVTEDILALPLLHEISGGDAPLGAAALDWQRAHARTALVWGCIANGAVMENDGAVMEYSRRSQSFLKECFDAPCTEAVSAHLAVSLFWGQFGENEKRKRYAQFAEMVMQEIEDVPPDLVSVLNYLKARPNIITQFASYWRAAIMCASDCAGADSSSAAAAGDPFSPHGHHRHAPRGGVPDPHAAAAAADDPHAPRRQVLDTLAFCLAALWRARTCSLVAGRPCAAVATLGPVAVIVAARPAAAAHALPWHAAHVAAAALHQRGHAAQYAQLRAALLPFQGKLPFTRASCPLPALPDDAAALDPRAWPPLCTRGAACRSVPCRLLARVWAAPASDDSDSDSSVPALQLPLKRQQXXXXXXXXXXXXXXXXXAQWPLDALFGGXXXXXXXXXXACDSPGLSPTSTRSLTSGDXXXXXXXXXXXXXXXXXERYAQNSLESPSAAEFGAAXXXXXXXXXXXSRLQRPPSPLPQRVAVSAAQQRAQYELCEAAALKRPAQRQRTLYLPFMGADI
Sbjct: 1 MSDGSVSYLRRGKDSFQQHLAGSYCERDLRDTTPHHALLVLPWNTCEVEGVATHTLKRFRSASPPAQRPALVPCTTSPSSHDMGSLRGRPRQRSFSDELAPEDEAEELLPGVFGMLTTRERHLLDIFLTHVNSFLPLVTEDILALPLLHEISGGDAPLGAAALDWQRAHARTALVWGCIANGAVMENDGAVMEYSRRSQSFLKECFDAPCTEAVSAHLAVSLFWGQFGENEKRKRYAQFAEMVMQEIEDVPPDLVSVLNYLKARPNIITQFASYWRAAIMCASDCAGADSSSAAAAGDPFSPHGHHRHAPRGGVPDPHAAAAAADDPHAPRRQVLDTLAFCLAALWRARTCSLVAGRPCAAVATLGPVAVIVAARPAAAAHALPWHAAHVAAAALHQRGHAAQYAQLRAALLPFQGKLPFTRASCPLPALPDDAAALDPRAWPPLCTRGAACRSVPCRLLARVWAAPASDDSDSDSSVPALQLPLKRQQXXXXXXXXXXXXXXXXXAQWPLDALFGGXXXXXXXXXXACDSPGLSPTSTRSLTSGDXXXXXXXXXXXXXXXXXERYAQNSLESPSAAEFGAAXXXXXXXXXXXSRLQRPPSPLPQRVAVSAAQQRAQYELCEAAALKRPAQRQRTLYLPFMGADI 645
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | Trimin1|338240|MIX47003_6_18 |
Hectar predicted targeting category | other localisation |
TranscriptId | 338562 |
Track | FilteredModels1 |
ProteinId | 338240 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11435 ID=mRNA_11435|Name=jgi.p|Trimin1|338240|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1938bp|location=Sequence derived from alignment at Contig_90:320730..324066- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGTCTGACGGCAGCGTGAGCTACTTGCGCAGAGGCAAGGACAGCTTCCA GCAGCACTTGGCAGGATCATACTGCGAGCGGGATTTACGGGATACAACAC CGCACCACGCGCTACTGGTGCTGCCTTGGAACACCTGCGAGGTTGAGGGA GTGGCGACGCACACGCTCAAGCGCTTCAGGAGCGCCTCGCCACCGGCGCA GCGGCCTGCTCTGGTGCCGTGCACGACTAGCCCGTCCTCGCACGACATGG GATCACTGCGAGGGAGACCCAGGCAGCGGTCGTTCTCAGATGAGCTAGCG CCAGAGGACGAGGCGGAGGAGCTGCTGCCGGGAGTTTTCGGCATGCTGAC AACCCGCGAGAGACACCTGCTGGACATCTTCTTGACGCACGTGAATTCCT TTCTGCCTCTGGTCACGGAGGACATCCTGGCGCTGCCCCTGCTCCATGAG ATCTCAGGCGGGGACGCGCCGCTGGGAGCGGCCGCTCTGGACTGGCAGAG GGCGCACGCTCGGACAGCGCTTGTCTGGGGCTGCATAGCCAACGGAGCTG TCATGGAGAACGATGGCGCCGTGATGGAGTACAGTCGAAGATCGCAGAGC TTCTTGAAGGAGTGCTTTGACGCACCGTGCACTGAGGCCGTCAGCGCACA CCTTGCGGTGTCCCTCTTTTGGGGGCAATTTGGGGAGAACGAGAAGCGCA AGCGCTATGCGCAGTTTGCAGAGATGGTCATGCAAGAAATTGAGGATGTG CCGCCAGACCTGGTCTCCGTTCTCAACTACCTCAAGGCAAGACCCAACAT CATTACGCAATTCGCTTCTTACTGGAGAGCCGCCATCATGTGCGCCAGCG ACTGCGCCGGCGCCGACTCCTCCTCCGCCGCCGCCGCAGGTGACCCCTTC TCGCCGCACGGCCACCACCGCCACGCGCCGCGCGGCGGCGTGCCGGACCC GCACGCCGCCGCCGCCGCCGCCGACGACCCGCACGCGCCGCGCCGCCAGG TCCTCGACACGCTCGCCTTCTGCCTCGCGGCGCTGTGGCGCGCGCGCACG TGCTCCCTCGTCGCGGGGCGCCCGTGCGCGGCGGTGGCGACGCTCGGGCC GGTCGCCGTGATCGTGGCGGCGCGCCCCGCCGCGGCGGCGCACGCACTGC CGTGGCACGCCGCGCACGTCGCCGCCGCGGCGCTGCACCAGCGCGGCCAC GCCGCGCAGTACGCGCAGCTGCGCGCCGCGCTGCTGCCGTTCCAGGGCAA GCTCCCCTTCACGCGCGCGTCGTGCCCGCTGCCGGCGCTGCCCGACGACG CCGCCGCGCTCGACCCGCGCGCGTGGCCGCCGCTCTGCACGCGCGGCGCC GCGTGCCGCAGCGTGCCGTGCCGCCTGCTCGCGCGCGTCTGGGCGGCGCC GGCGTCCGACGACTCGGACTCCGACTCGAGCGTGCCGGCGCTGCAGCTCC CGCTGAAGCGGCAGCAGTCGCAGCAGCACGGCGGCGCGGCCACGCCGCCC GCGGCAGCGGCAGCGGCGGCGCAATGGCCGCTGGATGCGCTGTTCGGCGG CGGCAGCGTGCCATCGGTGGCGGCCGCTGCAGCGTGCGACTCGCCCGGCC TGAGCCCGACCTCGACGCGCTCGCTCACGAGCGGCGACGACGGCGGCGGC GGCGCTGCCGCAGGCCTGTGGTCTTCCTCAAGCTCCTCCGAGCGATATGC GCAGAACTCACTGGAGTCGCCGTCGGCTGCGGAATTTGGCGCCGCCGCCG CCGCGCCGTCGCCTGCCGCCGCCGCCGCGTCGCGCCTGCAGCGGCCGCCG TCGCCGCTGCCGCAGCGCGTGGCGGTGTCGGCCGCGCAGCAGCGCGCGCA GTACGAGCTGTGCGAGGCGGCGGCGCTCAAGCGCCCCGCGCAGCGCCAGC GCACGCTGTACCTGCCGTTCATGGGCGCCGACATCTGA back to topprotein sequence of jgi.p|Trimin1|338240 >Trimin1|338240|MIX47003_6_18 ID=Trimin1|338240|MIX47003_6_18|Name=jgi.p|Trimin1|338240|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=646bp
MSDGSVSYLRRGKDSFQQHLAGSYCERDLRDTTPHHALLVLPWNTCEVEG VATHTLKRFRSASPPAQRPALVPCTTSPSSHDMGSLRGRPRQRSFSDELA PEDEAEELLPGVFGMLTTRERHLLDIFLTHVNSFLPLVTEDILALPLLHE ISGGDAPLGAAALDWQRAHARTALVWGCIANGAVMENDGAVMEYSRRSQS FLKECFDAPCTEAVSAHLAVSLFWGQFGENEKRKRYAQFAEMVMQEIEDV PPDLVSVLNYLKARPNIITQFASYWRAAIMCASDCAGADSSSAAAAGDPF SPHGHHRHAPRGGVPDPHAAAAAADDPHAPRRQVLDTLAFCLAALWRART CSLVAGRPCAAVATLGPVAVIVAARPAAAAHALPWHAAHVAAAALHQRGH AAQYAQLRAALLPFQGKLPFTRASCPLPALPDDAAALDPRAWPPLCTRGA ACRSVPCRLLARVWAAPASDDSDSDSSVPALQLPLKRQQSQQHGGAATPP AAAAAAAQWPLDALFGGGSVPSVAAAAACDSPGLSPTSTRSLTSGDDGGG GAAAGLWSSSSSSERYAQNSLESPSAAEFGAAAAAPSPAAAAASRLQRPP SPLPQRVAVSAAQQRAQYELCEAAALKRPAQRQRTLYLPFMGADI* back to topmRNA from alignment at Contig_90:320730..324066- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11435 ID=mRNA_11435|Name=jgi.p|Trimin1|338240|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3337bp|location=Sequence derived from alignment at Contig_90:320730..324066- (Tribonema minus UTEX_B_3156 ) ATGTCTGACGGCAGCGTGAGCTACTTGCGCAGAGGCAAGGACAGCTTCCA
GCAGCACTTGGCAGGATCATACTGCGAGCGGGATTTACGGGATACAACAC
CGCACCACGCGCTACTGGTGCTGCCTTGGAACACCTGCGAGGTTGAGGGA
GTGGCGACGCACACGCTCAAGCGCTTCAGGAGCGCCTCGCCACCGGCGCA
GCGGCCTGCTCTGGTGCCGTGCACGACTAGCCCGTCCTCGCACGACATGG
GATCACTGCGAGGGAGACCCAGGCAGCGGTCGTTCTCAGATGAGCTAGCG
CCAGAGGACGAGGCGGAGGAGCTGCTGCCGGGAGTTTTCGGCATGCTGAC
AACCCGCGAGAGACACCTGCTGGACATCTTCTTGACGCACGTGAATTCCT
TTCTGCCTCTGGTCACGGAGGACATCCTGGCGCTGCCCCTGCTCCATGAG
ATCTCAGGCGGGGACGCGCCGCTGGGAGCGGCCGCTCTGGACTGGCAGAG
GGCGCACGCTCGGACAGCGCTTGTCTGGGGCTGCATAGCCAACGGAGCTG
TCATGGAGAACGATGGCGCCGTGATGGAGTACAGTCGAAGGTGAGGAAGA
TGCCGCGCGTGAACGGAGTTTCGTTTCGCTTGCCGCCTCACTGCCGTGGG
TGCTGCGTTGCATCTGGTCTTCAGCTGCTGGCGTGCACGCATCAGTGGTT
TAATCATGAATAACGGCTCATCTTTCAAATTTCTGTCTCATCTTCAAGTT
CACTTTGCTGCCTCTGCTGTGAATGGCAGATCGCAGAGCTTCTTGAAGGA
GTGCTTTGACGCACCGTGCACTGAGGCCGTCAGCGCACACCTTGCGGTGT
CCCTCTTTTGGGGGCAATTTGGGGAGAACGAGAAGCGCAAGCGCTATGCG
CAGTTTGCAGAGATGGTCATGCAAGAAATTGAGGATGTGCCGCCAGACCT
GGTCTCCGTTCTCAACTACCTCAAGGCAAGACCCAACATCATTACGCAAT
TCGCTTCTTACTGGAGAGTATCACATTGGTCCACTTGAACCACTGTCACG
TTCAGTGGCAGCAGTGTCAATTTGCCTGCCAGTCCTTCAGTACCTGACGC
GCTGCATGTATTCACCGACTGTAGCGCAATCATCGCGTCAGCGTAAATGG
CCCAGTCTTACTGCATTAATGGTCAGCTCAGAATGCATCATCGACATCAT
GCTGTGGAGCATCCTACTTGAATTTTCGCCGCGGCCCTCTCGCTTCGGTT
CAGTAGACGCCACAAAGTAGTTTGGTTCATGGGGCTTGCACACTACTTCG
CTCTGAACTCAAATCTGCCTCACCCTGAGTGAAGCTTTGGCTACTGGAGT
GCTGGTGCATATTGCTTCACGGCGTCCCGTTGCCAGTGTCGCGTGTAAGT
CGAGCTATGTTGTCACGTTGCATCGCGCCCTCTCGATGCGCCCCAAACCG
GCGCCACCCAGCGGCTCAACTGCCACCCAGTGTTCCTGTGTCGTTACACA
CATCAGGCGGTGCACCCTATGCACCTGCCTGCTGCATAGCAACATGTTCC
ATCTCACCACACACATGTACCATCGTACCACACACATGTGTGTCCAGGTG
CCCGCCGGCTCCACTCTCATGTTTGCACAATTTGCACCTGCGCAGTGCGC
ACGGCAGCACAATGGACACACAAGTCCATGCACCGCACGAGCACTAGAAT
AAAATGAGAAAATGCACATGTTATCTTGAAGTTTAGCCCCCGCCCTCCCC
CCGTGCGAAAAATTTCTTGAAGTAACGCCGGCCACGCCCCCCCCCTGTGA
CTCTCCCCCCCCCCCCCGCAGGCCGCCATCATGTGCGCCAGCGACTGCGC
CGGCGCCGACTCCTCCTCCGCCGCCGCCGCAGGTGACCCCTTCTCGCCGC
ACGGCCACCACCGCCACGCGCCGCGCGGCGGCGTGCCGGACCCGCACGCC
GCCGCCGCCGCCGCCGACGACCCGCACGCGCCGCGCCGCCAGGTCCTCGA
CACGCTCGCCTTCTGCCTCGCGGCGCTGTGGCGCGCGCGCACGTGCTCCG
TGCGGCTGCGGCGCCGCATGAAGGCGGCGCTCGGCGACGCGCACGCCGCG
CTGTGCGCCGCGCGCGCCGCCGGCGGCTGACGCTGCGACGCCGCCGACGT
CGCGCTGCGCGGCCTGCTCGGCTACCTGCAGCTCGTCGCGGGGCGCCCGT
GCGCGGCGGTGGCGACGCTCGGGCCGGTCGCCGTGATCGTGGCGGCGCGC
CCCGCCGCGGCGGCGCACGCACTGCCGTGGCACGCCGCGCACGTCGCCGC
CGCGGCGCTGCACCAGCGCGGCCACGCCGCGCAGTACGCGCAGCTGCGCG
CCGCGCTGCTGCCGTTCCAGGTGAGCAGCGGCGGCGGTGCTGGCGATGTG
CCCGTGCCTGCATGTCGCAGCGGAGATGCCGTTCTTGTGTGTCTTGCGGT
GCGGAGTGGCAGGAGCGCTGGGACATTTTTGCGCTTGCCTTGCAAGCGCG
TGACGTGCATGCCTCGTTCGCGCATCCATAGCTGAGCAGATGTGGGCGGC
TGTGCACGCGACGCTGAGCTCAACTCAAACCGACCATTTGCCTCATCCCC
CCCCCCTCTCCCCTCCCCCCCCCCTCTCGCCCTCTGCCGCGCAGGGCAAG
CTCCCCTTCACGCGCGCGTCGTGCCCGCTGCCGGCGCTGCCCGACGACGC
CGCCGCGCTCGACCCGCGCGCGTGGCCGCCGCTCTGCACGCGCGGCGCCG
CGTGCCGCAGCGTGCCGTGCCGCCTGCTCGCGCGCGTCTGGGCGGCGCCG
GCGTCCGACGACTCGGACTCCGACTCGAGCGTGCCGGCGCTGCAGCTCCC
GCTGAAGCGGCAGCAGTCGCAGCAGCACGGCGGCGCGGCCACGCCGCCCG
CGGCAGCGGCAGCGGCGGCGCAATGGCCGCTGGATGCGCTGTTCGGCGGC
GGCAGCGTGCCATCGGTGGCGGCCGCTGCAGCGTGCGACTCGCCCGGCCT
GAGCCCGACCTCGACGCGCTCGCTCACGAGCGGCGACGACGGCGGCGGCG
GCGCTGCCGCAGGCCTGTGGTCTTCCTCAAGCTCCTCCGAGCGATATGCG
CAGAACTCACTGGAGTCGCCGTCGGCTGCGGAATTTGGCGCCGCCGCCGC
CGCGCCGTCGCCTGCCGCCGCCGCCGCGTCGCGCCTGCAGCGGCCGCCGT
CGCCGCTGCCGCAGCGCGTGGCGGTGTCGGCCGCGCAGCAGCGCGCGCAG
TACGAGCTGTGCGAGGCGGCGGCGCTCAAGCGCCCCGCGCAGCGCCAGCG
CACGCTGTACCTGCCGTTCATGGGCGCCGACATCTGA back to topCoding sequence (CDS) from alignment at Contig_90:320730..324066- >mRNA_11435 ID=mRNA_11435|Name=jgi.p|Trimin1|338240|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1938bp|location=Sequence derived from alignment at Contig_90:320730..324066- (Tribonema minus UTEX_B_3156 ) ATGTCTGACGGCAGCGTGAGCTACTTGCGCAGAGGCAAGGACAGCTTCCA GCAGCACTTGGCAGGATCATACTGCGAGCGGGATTTACGGGATACAACAC CGCACCACGCGCTACTGGTGCTGCCTTGGAACACCTGCGAGGTTGAGGGA GTGGCGACGCACACGCTCAAGCGCTTCAGGAGCGCCTCGCCACCGGCGCA GCGGCCTGCTCTGGTGCCGTGCACGACTAGCCCGTCCTCGCACGACATGG GATCACTGCGAGGGAGACCCAGGCAGCGGTCGTTCTCAGATGAGCTAGCG CCAGAGGACGAGGCGGAGGAGCTGCTGCCGGGAGTTTTCGGCATGCTGAC AACCCGCGAGAGACACCTGCTGGACATCTTCTTGACGCACGTGAATTCCT TTCTGCCTCTGGTCACGGAGGACATCCTGGCGCTGCCCCTGCTCCATGAG ATCTCAGGCGGGGACGCGCCGCTGGGAGCGGCCGCTCTGGACTGGCAGAG GGCGCACGCTCGGACAGCGCTTGTCTGGGGCTGCATAGCCAACGGAGCTG TCATGGAGAACGATGGCGCCGTGATGGAGTACAGTCGAAGATCGCAGAGC TTCTTGAAGGAGTGCTTTGACGCACCGTGCACTGAGGCCGTCAGCGCACA CCTTGCGGTGTCCCTCTTTTGGGGGCAATTTGGGGAGAACGAGAAGCGCA AGCGCTATGCGCAGTTTGCAGAGATGGTCATGCAAGAAATTGAGGATGTG CCGCCAGACCTGGTCTCCGTTCTCAACTACCTCAAGGCAAGACCCAACAT CATTACGCAATTCGCTTCTTACTGGAGAGCCGCCATCATGTGCGCCAGCG ACTGCGCCGGCGCCGACTCCTCCTCCGCCGCCGCCGCAGGTGACCCCTTC TCGCCGCACGGCCACCACCGCCACGCGCCGCGCGGCGGCGTGCCGGACCC GCACGCCGCCGCCGCCGCCGCCGACGACCCGCACGCGCCGCGCCGCCAGG TCCTCGACACGCTCGCCTTCTGCCTCGCGGCGCTGTGGCGCGCGCGCACG TGCTCCCTCGTCGCGGGGCGCCCGTGCGCGGCGGTGGCGACGCTCGGGCC GGTCGCCGTGATCGTGGCGGCGCGCCCCGCCGCGGCGGCGCACGCACTGC CGTGGCACGCCGCGCACGTCGCCGCCGCGGCGCTGCACCAGCGCGGCCAC GCCGCGCAGTACGCGCAGCTGCGCGCCGCGCTGCTGCCGTTCCAGGGCAA GCTCCCCTTCACGCGCGCGTCGTGCCCGCTGCCGGCGCTGCCCGACGACG CCGCCGCGCTCGACCCGCGCGCGTGGCCGCCGCTCTGCACGCGCGGCGCC GCGTGCCGCAGCGTGCCGTGCCGCCTGCTCGCGCGCGTCTGGGCGGCGCC GGCGTCCGACGACTCGGACTCCGACTCGAGCGTGCCGGCGCTGCAGCTCC CGCTGAAGCGGCAGCAGTCGCAGCAGCACGGCGGCGCGGCCACGCCGCCC GCGGCAGCGGCAGCGGCGGCGCAATGGCCGCTGGATGCGCTGTTCGGCGG CGGCAGCGTGCCATCGGTGGCGGCCGCTGCAGCGTGCGACTCGCCCGGCC TGAGCCCGACCTCGACGCGCTCGCTCACGAGCGGCGACGACGGCGGCGGC GGCGCTGCCGCAGGCCTGTGGTCTTCCTCAAGCTCCTCCGAGCGATATGC GCAGAACTCACTGGAGTCGCCGTCGGCTGCGGAATTTGGCGCCGCCGCCG CCGCGCCGTCGCCTGCCGCCGCCGCCGCGTCGCGCCTGCAGCGGCCGCCG TCGCCGCTGCCGCAGCGCGTGGCGGTGTCGGCCGCGCAGCAGCGCGCGCA GTACGAGCTGTGCGAGGCGGCGGCGCTCAAGCGCCCCGCGCAGCGCCAGC GCACGCTGTACCTGCCGTTCATGGGCGCCGACATCTGA back to top
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