mRNA_11402 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|338118
Unique NamemRNA_11402
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|338118 vs. uniprot
Match: A0A836C731_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C731_9STRA)

HSP 1 Score: 642 bits (1657), Expect = 3.190e-232
Identity = 311/311 (100.00%), Postives = 311/311 (100.00%), Query Frame = 1
Query:   52 MQLFQQALHDQHELNVRSTFRVHPRVPRTVREPECIYVQDATLNHFKEWVEGKQIDDTNPFQRYDRNEFWAYADYMHFGEIFGERTEAAAALLDWSSIGIGDAPQPTFWLGSAGAHTPLHFDTYGTNVVVQLHGEKRWTLFPPSATELLKPTRIPFEESSVYSGLDIRQLDGHSATGAAALCQTAVLRPGDVLFVPRHWWHFVECTSTAMSVNLWMDHPDDPSARVTEALARVVVTSMQEALESQLGSEWLSPTEEEWTPDQAMEMLQIAVQSQSSAGDAPPQPPASFQDVLDALLAPTTLQHIARQLTRR 984
            MQLFQQALHDQHELNVRSTFRVHPRVPRTVREPECIYVQDATLNHFKEWVEGKQIDDTNPFQRYDRNEFWAYADYMHFGEIFGERTEAAAALLDWSSIGIGDAPQPTFWLGSAGAHTPLHFDTYGTNVVVQLHGEKRWTLFPPSATELLKPTRIPFEESSVYSGLDIRQLDGHSATGAAALCQTAVLRPGDVLFVPRHWWHFVECTSTAMSVNLWMDHPDDPSARVTEALARVVVTSMQEALESQLGSEWLSPTEEEWTPDQAMEMLQIAVQSQSSAGDAPPQPPASFQDVLDALLAPTTLQHIARQLTRR
Sbjct:    1 MQLFQQALHDQHELNVRSTFRVHPRVPRTVREPECIYVQDATLNHFKEWVEGKQIDDTNPFQRYDRNEFWAYADYMHFGEIFGERTEAAAALLDWSSIGIGDAPQPTFWLGSAGAHTPLHFDTYGTNVVVQLHGEKRWTLFPPSATELLKPTRIPFEESSVYSGLDIRQLDGHSATGAAALCQTAVLRPGDVLFVPRHWWHFVECTSTAMSVNLWMDHPDDPSARVTEALARVVVTSMQEALESQLGSEWLSPTEEEWTPDQAMEMLQIAVQSQSSAGDAPPQPPASFQDVLDALLAPTTLQHIARQLTRR 311          
BLAST of jgi.p|Trimin1|338118 vs. uniprot
Match: D7G776_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G776_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 5.340e-82
Identity = 141/346 (40.75%), Postives = 206/346 (59.54%), Query Frame = 1
Query:    1 ERDTPVVLTGAAAHWPGMQLFQQALHDQHELNVRSTFRVHPRVPRTVREPECIYVQDATLNHFKEW---VEGKQIDDTNPFQRYDRNEFWAYADYMHFGEIFGERTEAAAALLDWSSIGIGDAP-QPTFWLGSAGAHTPLHFDTYGTNVVVQLHGEKRWTLFPPSATELLKPTRIPFEESSVYSGLDIRQLDGHSATGAAALCQTAV-LRPGDVLFVPRHWWHFVECTSTAMSVNLWMDHPDDPSARVTEALARVVVTSMQEALESQLGSEWLSPTEEE-WTPDQAMEMLQIAVQS------------QSSAGDAPPQPPASFQDVLDALLAPTTLQHIARQLTRR 984
            +R+ P+VL  AA  W G    Q  L +     +R+T+R+HP    TV E +CI+++ A++  F EW    E    +  NPF+ YDRN  W+YADY H  E+  +  +A   ++DWS++G   A    T WLG+ G+HTPLHFDTYG N+V QLHG K+W L+PP+ T  L PTRIP+EESSV+S +D R  D       A     AV L PGDVLFVP+HWWHFVE T T++SVN+W+D P+D   R  E++ARV++TS+   L++++G  WL+PTE+  W  ++ + +  +A Q             ++ A  A      S + + DA+ AP  LQ +  ++ ++
Sbjct:   24 QRERPLVLRNAARSWKG----QPILENPRVKRLRTTWRIHPLGVSTVWEADCIFLE-ASVGQFLEWEKSAEPLSAEGDNPFRHYDRNAHWSYADYKHLKELEDDWAKALEPIIDWSTLGCEKAATDSTLWLGTGGSHTPLHFDTYGVNLVAQLHGRKKWLLYPPADTTALAPTRIPYEESSVFSQVDARAPDLVRFPQFAEAHPLAVTLEPGDVLFVPKHWWHFVEATDTSLSVNVWVDTPNDSEDRAKESVARVLMTSLAGGLDAEVGPGWLNPTEQAVWPIEETLAVASLAFQGLNAHPEEESSDHENGAAGARAGGDFSVRAMADAITAPDVLQMVFERIAQK 364          
BLAST of jgi.p|Trimin1|338118 vs. uniprot
Match: UPI0001CBC150 (HSPB1-associated protein 1 homolog n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBC150)

HSP 1 Score: 215 bits (548), Expect = 2.190e-62
Identity = 113/295 (38.31%), Postives = 177/295 (60.00%), Query Frame = 1
Query:   13 PVVLTGAAAHWPGMQLFQQALHDQHELNVRSTFRVHPRV----PRTVREPECIYVQDATLNHFKEWV--EGKQIDDTNPFQRYDRNEFWAYADYMHFGEIFGERTEAAAALLDWSSIGIGD--APQPTFWLGSAGAHTPLHFDTYGTNVVVQLHGEKRWTLFPPSATELLKPTRIPFEESSVYSGLDIRQLD-GHSATGAAALCQTAVLRPGDVLFVPRHWWHFVECTSTAMSVNLWMDHPDDPSARVTEALARVVVTSMQEALESQLGSEWLSPTEEEWTPDQAMEMLQIAVQS 870
            PVV       WP ++   ++L +   L+    FR+  R        + E +C+Y ++ATL  + EW+  + +Q+ + NP + +   ++W YADY +   +F +RT+   ++  WS+ G  D    + T W+GS G+HTP HFDTYG N+V Q+HG+K+W+LF P  T +L PTRIP+EESSV+S ++I   D         A      L+PGDVL+VPRHWWHFVEC + A+S+N W++   D  AR+ E++ R++  +M  +  +  GS WL+PTEE  +P+  +E L+ A++S
Sbjct:   29 PVVFKSMIDDWPSVKWTNESLAEI-LLDQTVKFRIGTRKWADEKGVLWERDCMY-RNATLYCYNEWLNKDSEQLSEDNPLKEFPSTDYWCYADYKYMAHVFQDRTDILKSV-KWSNFGFADRDGTESTIWIGSEGSHTPCHFDTYGCNLVAQIHGKKKWSLFAPHQTAMLYPTRIPYEESSVFSHVNITNPDLKKHPCFQDATPYVITLQPGDVLYVPRHWWHFVECLTPAISINTWIELNVDNQARLEESIVRLITCNMMSSKNTNDGS-WLNPTEEMTSPEVNLEYLKAAMKS 319          
BLAST of jgi.p|Trimin1|338118 vs. uniprot
Match: A0A8B6D9H0_MYTGA (HSPB1-associated protein 1 n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6D9H0_MYTGA)

HSP 1 Score: 210 bits (534), Expect = 8.760e-60
Identity = 117/301 (38.87%), Postives = 174/301 (57.81%), Query Frame = 1
Query:   13 PVVLTGAAAHWPGMQLFQQALHDQHELNVRSTFRVHPRVPRTVREPECIYVQDATLNHFKEWVEGKQIDDTNPFQRYDRNEFWAYADYMHFGEIFGERTEAAAALLDWSSIGIG--DAPQPTFWLGSAGAHTPLHFDTYGTNVVVQLHGEKRWTLFPPSATELLKPTRIPFEESSVYSGLDIRQLDGHSATGAAALCQTA-----VLRPGDVLFVPRHWWHFVECTSTAMSVNLWMDHPDDPSARVTEALARVVVTSMQEALESQLGS--EWLSPTEEEWTPDQAMEMLQIAVQSQSSAGD 888
            P+VL    + WP  +     L  +   N R   +V P+    + E EC++ ++ TL  F EW  GK  D+ NP   Y++++   Y DY +  ++F E+T+   A+ DWS  G+   D    T W+GS G +T  H+DTYG N+V Q++G KRWTLFPPS T+ + PTRIP+EESSV+S +D+++ D    T    L + +     +L PGDVL+VPRHWWHFVE   T++S+N W++  +D  + VTEA++RV+   M +     +GS  +W++P EE    D     LQ A+ S   A D
Sbjct:   15 PIVLKNRISDWPSRKWTPNYLASE-LTNQRYKCKVAPKDDNVLWETECVH-EEITLQQFVEWNLGKP-DENNPLFPYNKSDVTCYIDYKYMKDLFIEKTDHMKAV-DWSVFGLDNRDGNDSTIWIGSEGCYTNCHYDTYGFNLVAQIYGRKRWTLFPPSDTKYMYPTRIPYEESSVFSPVDVKKPD----TTTFHLFKNSHPHVVILEPGDVLYVPRHWWHFVESLETSISINTWVEMEEDKDSHVTEAISRVLFGCMMDIKIGSVGSTTDWINPGEEVQGHDVNFRYLQQALGSYKKAKD 307          
BLAST of jgi.p|Trimin1|338118 vs. uniprot
Match: A0A7S2S6Y3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S6Y3_9STRA)

HSP 1 Score: 204 bits (518), Expect = 2.270e-58
Identity = 140/366 (38.25%), Postives = 195/366 (53.28%), Query Frame = 1
Query:   10 TPVVLTGAAAHWPGMQLFQQALHDQHELNVRSTFRVHPRVP-----RTVREPECIYVQDATLNHFKEWVE----GKQIDDTNPFQRYDRNEFWAYADYMHFGEIFGERTEAAAALLDWSSIGIG-DAP--QPTFWLGSAGAHTPLHFDTYGTNVVVQLHGEKRWTLFPPSATELLKPTRIPFEESSVYSGLDIRQLDGHSATGAAALCQT----AVLRPGDVLFVPRHWWHFVECTS--TAMSVNLWMDHPD--------------DPSARVTEALARVVVTSM-------QEALESQLGSEWLSPTEEEWTPDQAMEMLQIAVQS--QSSAGDAPPQPPA---SFQDVLDALLAPTTLQHIARQL 975
            +P VL G      G+Q+ +            + +RVHP        R+VRE EC Y+Q AT+  F+EW +    G ++D  +P   +  +EFWAYADY     +FG+    A A LDW S+  G DA     T W+GS GAH+ LH DTYG N+V+Q+HG KRW L+PP+AT  L PTR PFEESSV+S  D+RQ       G   L Q      +L PGD+L+VP+HWWH VEC S    +S N+W++HP               D  +RV EAL R +VT++       + ++E     +WL+PTE   +    + +L  AV    Q   G    + P+   S   +LDA+L PTT++ +A  L
Sbjct:   27 SPAVLRGR-----GLQVVEALRRSILSSTATTKWRVHPYPEDGSRRRSVRESECAYIQ-ATIAEFEEWTKQSPGGCRVD--HPLASFPPSEFWAYADYKTAEGLFGDTVATALAGLDWDSLVQGVDAALGSSTLWIGSTGAHSALHQDTYGVNLVLQVHGSKRWRLWPPAATTALLPTRTPFEESSVFSHHDVRQ------PGEEPLLQDPTVDVILHPGDLLWVPKHWWHDVECISGPACVSANVWLEHPGSELATPNLHLDPEPDALSRVGEALVRCLVTAVRCYEHDGEPSMEHM--DQWLNPTETAASHGVNLALLGHAVHHARQEILGVQSSEDPSKLVSSDALLDAVLNPTTVKAMAMHL 376          
BLAST of jgi.p|Trimin1|338118 vs. uniprot
Match: UPI001864D62C (HSPB1-associated protein 1 homolog n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001864D62C)

HSP 1 Score: 204 bits (519), Expect = 5.050e-58
Identity = 115/293 (39.25%), Postives = 165/293 (56.31%), Query Frame = 1
Query:   13 PVVLTGAAAHWPGMQLFQQALHDQ-HELNVRSTFRVHPRVPRTVREPECIYVQDATLNHFKEWVEGKQIDDTNPFQRYDRNEFWAYADYMHFGEIFGERTEAAAALLDWSSIGIG--DAPQPTFWLGSAGAHTPLHFDTYGTNVVVQLHGEKRWTLFPPSATELLKPTRIPFEESSVYSGLDIRQLDGHSATGAAALCQTAV--LRPGDVLFVPRHWWHFVECTST-AMSVNLWMDHPDDPSARVTEALARVVVTSMQEALESQLGSEWLSPTEEEWTP-DQAMEMLQIAVQS 870
            PVV  G A+ WP +Q   + L     E  VR            + E +C Y++ ATL  F  W   +      PF  Y  +E+WAYADY +   +F ++      ++ WS  G    +  Q T W+G+AGA+TP H D+YG N+V+Q+ G KRW LFPP  T+ L PTRIP+EESSV+S +++ Q D H+   A +  Q  +  L PG VLFVPRHWWH+VE      +S+N W++   D  +RV EALAR +V +++    S     WL+PTE+  T  D+ ++ L +AVQ+
Sbjct:   21 PVVFLGMASDWPALQWGTEQLSQTLGERTVRFRIGKRQEEKTPLFETQCSYIE-ATLGEFLPWARCQSSSSIGPFFDYPLSEYWAYADYKYIAMLFEDKASMFEDVV-WSDFGYPGRNGQQSTLWVGTAGANTPCHLDSYGCNLVLQVQGRKRWHLFPPEDTDSLYPTRIPYEESSVFSRVNVVQPD-HTLFPAFSGAQAHIVTLEPGQVLFVPRHWWHYVESLDPITVSINSWIEMEADDESRVGEALARTIVCALKTTPSSDNADNWLNPTEDRATSHDENLQYLNLAVQA 310          
BLAST of jgi.p|Trimin1|338118 vs. uniprot
Match: UPI000719BBBE (HSPB1-associated protein 1-like isoform X4 n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719BBBE)

HSP 1 Score: 200 bits (509), Expect = 7.520e-58
Identity = 118/290 (40.69%), Postives = 159/290 (54.83%), Query Frame = 1
Query:   13 PVVLTGAAAHWPGMQLFQQALHD---QHELNVRSTFRVHPRVPRTVREPECIYVQDATLNHFKEWVEGKQIDDTNPFQRYDRNEFWAYADYMHFGEIFGERTEAAAALLDWSSIGIGDA--PQPTFWLGSAGAHTPLHFDTYGTNVVVQLHGEKRWTLFPPSATELLKPTRIPFEESSVYSGLDIRQLDGHSATGAAALCQTAVLRPGDVLFVPRHWWHFVECTSTAMSVNLWMDHPD-DPSARVTEALARVVVTSMQEALESQLGSEWLSPTEEEWTPDQAMEMLQIAV 864
            P V  G    W   +    AL     +    VR   R H R   T  E +C+Y+Q AT+    EW EG      NP   ++   +WAY DY +F ++FG+ +E   A+ DWS  G  ++     T WLG+ GA+TP H+D+YG N+V QL+G K WTLFPP  TE LKP RIP+EESS++   +      + A    A      L PGDVL VPRHWWH VE   T++SVN W+D P  D   R+ EA+ RVV++ M E+  ++  + WL+PTE        ME+LQ AV
Sbjct:    9 PTVFCGVIDRWKARRWDPTALASMLREKHFRVRIGMRDH-RHRGTQFETDCMYIQ-ATVQDVIEWSEGN-ASTINPLFGFNSKVYWAYIDYRYFTDVFGKTSEEVEAV-DWSVFGFKESHGKDTTLWLGTKGAYTPCHYDSYGCNLVAQLYGRKCWTLFPPDDTERLKPIRIPYEESSIFCSENFSTDSQNCALLKDASPHIVTLHPGDVLLVPRHWWHLVENLETSISVNFWVDMPQLDDHERINEAITRVVMSCMMESEGAE--AHWLNPTEGILPHMVNMELLQQAV 292          
BLAST of jgi.p|Trimin1|338118 vs. uniprot
Match: A0A6J8BFS0_MYTCO (HSPBAP1 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BFS0_MYTCO)

HSP 1 Score: 206 bits (523), Expect = 1.590e-57
Identity = 114/299 (38.13%), Postives = 173/299 (57.86%), Query Frame = 1
Query:   13 PVVLTGAAAHWPGMQLFQQALHDQHELNVRSTFRVHPRVPRTVREPECIYVQDATLNHFKEWVEGKQIDDTNPFQRYDRNEFWAYADYMHFGEIFGERTEAAAALLDWSSIGIG--DAPQPTFWLGSAGAHTPLHFDTYGTNVVVQLHGEKRWTLFPPSATELLKPTRIPFEESSVYSGLDIRQLDGHSATGAAALCQTA-----VLRPGDVLFVPRHWWHFVECTSTAMSVNLWMDHPDDPSARVTEALARVVVTSMQEALESQLGS--EWLSPTEEEWTPDQAMEMLQIAVQSQSSA 882
            P+VL    + WP  +     L  +   N R   ++ P+    + E EC++ ++ TL  F EW  G+ +++ NP   Y+R +   Y DY +  ++F E+T+   A+ DWS  G+   D    T W+GS G +T  H+DTYG N+V Q++G KRWTLFPPS T+ L PTRIP+EESSV+S +++++ D    T    L + +     +L PGDVL+VPRHWWHFVE   T++S+N W++  +D  + VTEA++RV+   M +     +GS  +W++P EE    D     L+ AV S   A
Sbjct:   61 PIVLKNKISDWPARKWTPNYLASE-LTNQRYKCKIAPKDDHVLWETECVH-EEITLQQFVEWNFGRPVEN-NPLLPYNRLDVTCYIDYKYMKDLFIEKTDHLKAV-DWSIFGLESRDGNDSTIWIGSEGCYTNCHYDTYGFNLVAQIYGRKRWTLFPPSDTKYLYPTRIPYEESSVFSQVNVKKPD----TTTFHLFKNSHPHVVILEPGDVLYVPRHWWHFVESLETSISINTWVEMEEDKDSHVTEAISRVLFGCMMDIKIGSVGSTTDWINPGEEVQCHDVNFRYLRQAVDSYKKA 351          
BLAST of jgi.p|Trimin1|338118 vs. uniprot
Match: A0A250YIU6_CASCN (HSPB1-associated protein 1 n=5 Tax=Castor canadensis TaxID=51338 RepID=A0A250YIU6_CASCN)

HSP 1 Score: 203 bits (516), Expect = 2.950e-57
Identity = 115/275 (41.82%), Postives = 157/275 (57.09%), Query Frame = 1
Query:   16 VVLTGAAAHWPGMQLFQQALHDQHELNVRSTFRVHPRVPRTVREPECIYVQDATLNHFKEWVEGKQIDDTNPFQRYDRNEFWAYADYMHFGEIFGERTEAAAALLDWSSIGIG--DAPQPTFWLGSAGAHTPLHFDTYGTNVVVQLHGEKRWTLFPPSATELLKPTRIPFEESSVYSGLDIRQLD-GHSATGAAALCQTAVLRPGDVLFVPRHWWHFVECTS-TAMSVNLWMDHPDDPSARVTEALARVVVTSMQEALESQLGSEWLSPTEEEWT 828
            +V    A HW    L  + LH + ++  R   +    VP+   E  C YV DATL  F  W    Q   + PF+ YD ++FWAYADY +F  +F +RT+    ++ WS  G    +  + T W+GS GAHTP H D+YG N+V Q+ G KRW LFPP  T  L PTRIP+EESSV+S +++   D  H      A   T  L PG VLFVPRHWWH+VE      +S+N W++  +D  ARV EA+ R++V +++ A + Q    WL+PTE E T
Sbjct:   49 MVFNWPARHWTAKHL-SEVLHGK-QIRFRMGLKSIDTVPQF--ETACSYV-DATLEEFLTW-NCDQHSSSGPFRDYDHSKFWAYADYKYFISLFEDRTDIFQGVI-WSDFGFPGRNGQESTLWIGSLGAHTPCHLDSYGCNLVFQVQGRKRWHLFPPEDTPFLYPTRIPYEESSVFSKINVVNPDLKHFPQFQKAQRHTVTLNPGQVLFVPRHWWHYVESIDPVTISINSWIELEEDHLARVEEAITRMLVCALKTAEDPQNTRAWLNPTEVEET 316          
BLAST of jgi.p|Trimin1|338118 vs. uniprot
Match: UPI000719DAEF (HSPB1-associated protein 1-like isoform X1 n=3 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719DAEF)

HSP 1 Score: 200 bits (509), Expect = 4.400e-56
Identity = 118/290 (40.69%), Postives = 159/290 (54.83%), Query Frame = 1
Query:   13 PVVLTGAAAHWPGMQLFQQALHD---QHELNVRSTFRVHPRVPRTVREPECIYVQDATLNHFKEWVEGKQIDDTNPFQRYDRNEFWAYADYMHFGEIFGERTEAAAALLDWSSIGIGDA--PQPTFWLGSAGAHTPLHFDTYGTNVVVQLHGEKRWTLFPPSATELLKPTRIPFEESSVYSGLDIRQLDGHSATGAAALCQTAVLRPGDVLFVPRHWWHFVECTSTAMSVNLWMDHPD-DPSARVTEALARVVVTSMQEALESQLGSEWLSPTEEEWTPDQAMEMLQIAV 864
            P V  G    W   +    AL     +    VR   R H R   T  E +C+Y+Q AT+    EW EG      NP   ++   +WAY DY +F ++FG+ +E   A+ DWS  G  ++     T WLG+ GA+TP H+D+YG N+V QL+G K WTLFPP  TE LKP RIP+EESS++   +      + A    A      L PGDVL VPRHWWH VE   T++SVN W+D P  D   R+ EA+ RVV++ M E+  ++  + WL+PTE        ME+LQ AV
Sbjct:    9 PTVFCGVIDRWKARRWDPTALASMLREKHFRVRIGMRDH-RHRGTQFETDCMYIQ-ATVQDVIEWSEGN-ASTINPLFGFNSKVYWAYIDYRYFTDVFGKTSEEVEAV-DWSVFGFKESHGKDTTLWLGTKGAYTPCHYDSYGCNLVAQLYGRKCWTLFPPDDTERLKPIRIPYEESSIFCSENFSTDSQNCALLKDASPHIVTLHPGDVLLVPRHWWHLVENLETSISVNFWVDMPQLDDHERINEAITRVVMSCMMESEGAE--AHWLNPTEGILPHMVNMELLQQAV 292          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|338118 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C731_9STRA3.190e-232100.00JmjC domain-containing protein n=1 Tax=Tribonema m... [more]
D7G776_ECTSI5.340e-8240.75JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
UPI0001CBC1502.190e-6238.31HSPB1-associated protein 1 homolog n=1 Tax=Saccogl... [more]
A0A8B6D9H0_MYTGA8.760e-6038.87HSPB1-associated protein 1 n=2 Tax=Mytilus gallopr... [more]
A0A7S2S6Y3_9STRA2.270e-5838.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI001864D62C5.050e-5839.25HSPB1-associated protein 1 homolog n=1 Tax=Megalop... [more]
UPI000719BBBE7.520e-5840.69HSPB1-associated protein 1-like isoform X4 n=1 Tax... [more]
A0A6J8BFS0_MYTCO1.590e-5738.13HSPBAP1 n=1 Tax=Mytilus coruscus TaxID=42192 RepID... [more]
A0A250YIU6_CASCN2.950e-5741.82HSPB1-associated protein 1 n=5 Tax=Castor canadens... [more]
UPI000719DAEF4.400e-5640.69HSPB1-associated protein 1-like isoform X1 n=3 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_90contigContig_90:33528..36071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|338118|MIX46881_15_48
BRITEko00000,ko03110
KEGG koko:K19375
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Preferred nameHSPBAP1
DescriptiontRNAPhe (7-(3-amino-3-carboxypropyl)wyosine37-C2)-hydroxylase activity
COG categoryIQ
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2132@1|root,KOG2132@2759|Eukaryota
Evalue7.78e-79
Seed ortholog2880.D7G776
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionJumonji domain protein
Ec32 orthologEc-01_010780.1
TranscriptId338440
TrackFilteredModels1
ProteinId338118
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|338118gene_11402Tribonema minus UTEX_B_3156 geneContig_90 33528..36071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|338118Trimin1|338118|MIX46881_15_48Tribonema minus UTEX_B_3156 polypeptideContig_90 33655..36020 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11402_6exon_11402_6Tribonema minus UTEX_B_3156 exonContig_90 33528..33758 -
exon_11402_5exon_11402_5Tribonema minus UTEX_B_3156 exonContig_90 34165..34475 -
exon_11402_4exon_11402_4Tribonema minus UTEX_B_3156 exonContig_90 34684..34820 -
exon_11402_3exon_11402_3Tribonema minus UTEX_B_3156 exonContig_90 35335..35521 -
exon_11402_2exon_11402_2Tribonema minus UTEX_B_3156 exonContig_90 35627..35808 -
exon_11402_1exon_11402_1Tribonema minus UTEX_B_3156 exonContig_90 36006..36071 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11402UTR3_11402Tribonema minus UTEX_B_3156 three_prime_UTRContig_90 33528..33654 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11402CDS_11402Tribonema minus UTEX_B_3156 CDSContig_90 36006..36020 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_11402UTR5_11402Tribonema minus UTEX_B_3156 five_prime_UTRContig_90 36021..36071 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11402 ID=mRNA_11402|Name=jgi.p|Trimin1|338118|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1114bp|location=Sequence derived from alignment at Contig_90:33528..36071- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGCGCGACACACCTGTTGTACTCACTGGTGCTGCCGCGCATTGGCCTGG
CATGCAACTATTTCAGCAGGCGTTGCACGACCAGCACGAGCTGAACGTCC
GAAGTACCTTTCGTGTACATCCGCGCGTGCCCAGAACCGTGCGTGAGCCG
GAATGCATCTACGTCCAAGATGCAACACTGAACCACTTCAAGGAGTGGGT
GGAGGGCAAACAAATTGATGACACAAATCCGTTCCAGCGTTATGACAGGA
ACGAGTTCTGGGCATATGCTGACTACATGCACTTTGGAGAGATCTTCGGA
GAGCGCACGGAAGCTGCTGCTGCGCTGCTTGATTGGAGCAGCATTGGGAT
AGGAGATGCTCCACAACCGACATTCTGGTTGGGCTCAGCGGGAGCGCACA
CACCACTGCATTTCGACACTTACGGCACCAACGTGGTGGTACAGCTTCAT
GGAGAAAAGCGGTGGACCCTGTTCCCACCTTCTGCAACAGAGCTTCTGAA
GCCTACACGAATTCCGTTTGAAGAAAGCAGCGTGTACAGTGGGCTGGACA
TACGACAACTCGATGGGCATAGCGCCACTGGAGCAGCTGCGCTATGTCAA
ACAGCAGTCCTTCGTCCCGGCGACGTGCTCTTCGTACCGAGGCACTGGTG
GCACTTTGTGGAGTGCACGAGCACTGCCATGTCTGTAAATCTATGGATGG
ACCACCCTGATGATCCCAGCGCACGGGTGACAGAGGCGCTGGCACGTGTT
GTGGTCACGTCCATGCAAGAGGCGCTAGAGAGCCAGCTTGGCTCAGAGTG
GCTGAGCCCTACGGAGGAGGAGTGGACTCCCGACCAGGCCATGGAGATGC
TGCAGATTGCCGTACAGTCGCAGTCAAGCGCAGGAGACGCACCTCCACAG
CCCCCAGCCAGCTTTCAAGACGTGCTGGATGCGCTTCTTGCACCCACCAC
ATTGCAGCATATAGCACGACAGCTCACCCGTCGATGAGCATGTGTGCACT
CAGCACTGCACCGACAGATTCGATGTGCAGCTCGCCCAGTAGCATCATTC
GACGTCGTCAGACAAATCGCCAGCTGCGCAGCTCTTGGCATACACACAAT
ATATGTACTTCCTC
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protein sequence of jgi.p|Trimin1|338118

>Trimin1|338118|MIX46881_15_48 ID=Trimin1|338118|MIX46881_15_48|Name=jgi.p|Trimin1|338118|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=312bp
MQLFQQALHDQHELNVRSTFRVHPRVPRTVREPECIYVQDATLNHFKEWV
EGKQIDDTNPFQRYDRNEFWAYADYMHFGEIFGERTEAAAALLDWSSIGI
GDAPQPTFWLGSAGAHTPLHFDTYGTNVVVQLHGEKRWTLFPPSATELLK
PTRIPFEESSVYSGLDIRQLDGHSATGAAALCQTAVLRPGDVLFVPRHWW
HFVECTSTAMSVNLWMDHPDDPSARVTEALARVVVTSMQEALESQLGSEW
LSPTEEEWTPDQAMEMLQIAVQSQSSAGDAPPQPPASFQDVLDALLAPTT
LQHIARQLTRR*
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mRNA from alignment at Contig_90:33528..36071-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11402 ID=mRNA_11402|Name=jgi.p|Trimin1|338118|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2544bp|location=Sequence derived from alignment at Contig_90:33528..36071- (Tribonema minus UTEX_B_3156 )
GAGCGCGACACACCTGTTGTACTCACTGGTGCTGCCGCGCATTGGCCTGG CATGCAACTATTTCAGGTGACAATCAGTGCCTCGCATGGTCAACGCAGCG GCACAATTGGTGTTCAAATTGTCTGTGCGTTTCAAAATCAGCGTGCTTTC CCCCCCCCAACAGATCTGATTTTTTCTTCAACACTTGATCAAGGTGTGAC ATACTGCCCACAGCACATGAAACTCATACATATGCCTCATTTGCTACTCT TCGCATTGCAGAGCAGGCGTTGCACGACCAGCACGAGCTGAACGTCCGAA GTACCTTTCGTGTACATCCGCGCGTGCCCAGAACCGTGCGTGAGCCGGAA TGCATCTACGTCCAAGATGCAACACTGAACCACTTCAAGGAGTGGGTGGA GGGCAAACAAATTGATGACACAAATCCGTTCCAGCGTTATGACAGGTAAA TTGACATCACTACGCTTACATTCGCATGAAGCACAACATGACAGTGCCTG TATCGAAATATCAACAACACCAAATCGCTGTTGCTTGACTTGGTTGACAG GAACGAGTTCTGGGCATATGCTGACTACATGCACTTTGGAGAGATCTTCG GAGAGCGCACGGAAGCTGCTGCTGCGCTGCTTGATTGGAGCAGCATTGGG ATAGGAGATGCTCCACAACCGACATTCTGGTTGGGCTCAGCGGGAGCGCA CACACCACTGCATTTCGACACTTACGGCACCAACGTGGTACGCATCCTTA CCATATCATATGTCATCAGCGCACAGAAGAAGGCGTCCAGCACAGCAAGA GAGCAACCTGTTGTTTTCAAGATGTGGGCAATGTTCTCCACCATGAAGTG CCGCAATGCAATACATGTCCGCCATGCAGCACCACAATACAATGCAGATC AAGTCTGCAATTTGGTTCATGACATGTGGCTTGCACGTTGTGATCCCTGG ACAGCATCAGTGTTGTCTCAAACCTCGCATGGCGATATTGTGCACGGGCA CTCCTCACGGACAAGCTATGATATGATCTGAAGTGTAGCACTTGTGTGTA GCACTTGACGTTCTCCTAGCATACCATGGCGAAATTGCTGATGCAAAGTT GTGCGCGAGGTGGTAATGACCGTCAATGCCAACTTCACCATACTCCAAGT AGCTCATAATGTCAAATCCTGGCTTGCCATCGCATCTGTGGGCAACACTG AGGCGCAAGGCCTTCCGTTACTTCAATCACACTGTTCGGTTGCATGTGCA GGTGGTACAGCTTCATGGAGAAAAGCGGTGGACCCTGTTCCCACCTTCTG CAACAGAGCTTCTGAAGCCTACACGAATTCCGTTTGAAGAAAGCAGCGTG TACAGTGGGCTGGACATACGACAACTCGATGGGCATAGGTGAGCACTATC AGCTCCGCCGTTACCGCAACCTCTTGTATGCTGAAGGTCGTTGCACCTTA GCATAAGTATTAATGATTCGGCACACATACATCTGCTCATACCGAGGGTG CTGCTGCGTTGAAAGTTGAAGTGTTTACTTGTAGTGTTACTACAAAAGAA TTGTGTGCACTGACTGCACGTGCTGCTCTCATTGCGCCTCCCGCAGCGCC ACTGGAGCAGCTGCGCTATGTCAAACAGCAGTCCTTCGTCCCGGCGACGT GCTCTTCGTACCGAGGCACTGGTGGCACTTTGTGGAGTGCACGAGCACTG CCATGTCTGTAAATCTATGGATGGACCACCCTGATGATCCCAGCGCACGG GTGACAGAGGCGCTGGCACGTGTTGTGGTCACGTCCATGCAAGAGGCGCT AGAGAGCCAGCTTGGCTCAGAGTGGCTGAGCCCTACGGAGGAGGAGTGGA CTCCCGACCAGGCCATGGAGATGCTGCAGATTGCCGTACAGTCGCAGTCA AGCGCAGGTGTGTGACAGTATGGTGTGCACGTTTTGTGCAAGTGGGTGTT GTGTGACGCATGCCTGCTGCAGTAGTCCCCTGCACTCCATGCGTCGGGGG TGGACTGATGGCAGCTGTGCAGGCAGCTGGATTGGCTAAAGCATAGAATG GCGTTGTACGTTGTTCCATGAGGAACCATGTACTGAAAGTGGTTTATTGC CAAGACATGTACTGAAGTAGCTGCAACCATTGCAGTGCAAACAGCAATAG CGAGAGCCAGCAGTACCATGAACCTGAAGTGTTGTCGCATCATTCGGTGC TTGGCATTCTTGTGGCAGTAGGTACCTGCAATGATCTCGTGCATGCTGTG TTGACAGTCGTGTACAAAACGCTTACCAAATACTTGCATTGTGCCACATT GTTGCTGTCACAGGAGACGCACCTCCACAGCCCCCAGCCAGCTTTCAAGA CGTGCTGGATGCGCTTCTTGCACCCACCACATTGCAGCATATAGCACGAC AGCTCACCCGTCGATGAGCATGTGTGCACTCAGCACTGCACCGACAGATT CGATGTGCAGCTCGCCCAGTAGCATCATTCGACGTCGTCAGACAAATCGC CAGCTGCGCAGCTCTTGGCATACACACAATATATGTACTTCCTC
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Coding sequence (CDS) from alignment at Contig_90:33528..36071-

>mRNA_11402 ID=mRNA_11402|Name=jgi.p|Trimin1|338118|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=936bp|location=Sequence derived from alignment at Contig_90:33528..36071- (Tribonema minus UTEX_B_3156 )
ATGCAACTATTTCAGCAGGCGTTGCACGACCAGCACGAGCTGAACGTCCG
AAGTACCTTTCGTGTACATCCGCGCGTGCCCAGAACCGTGCGTGAGCCGG
AATGCATCTACGTCCAAGATGCAACACTGAACCACTTCAAGGAGTGGGTG
GAGGGCAAACAAATTGATGACACAAATCCGTTCCAGCGTTATGACAGGAA
CGAGTTCTGGGCATATGCTGACTACATGCACTTTGGAGAGATCTTCGGAG
AGCGCACGGAAGCTGCTGCTGCGCTGCTTGATTGGAGCAGCATTGGGATA
GGAGATGCTCCACAACCGACATTCTGGTTGGGCTCAGCGGGAGCGCACAC
ACCACTGCATTTCGACACTTACGGCACCAACGTGGTGGTACAGCTTCATG
GAGAAAAGCGGTGGACCCTGTTCCCACCTTCTGCAACAGAGCTTCTGAAG
CCTACACGAATTCCGTTTGAAGAAAGCAGCGTGTACAGTGGGCTGGACAT
ACGACAACTCGATGGGCATAGCGCCACTGGAGCAGCTGCGCTATGTCAAA
CAGCAGTCCTTCGTCCCGGCGACGTGCTCTTCGTACCGAGGCACTGGTGG
CACTTTGTGGAGTGCACGAGCACTGCCATGTCTGTAAATCTATGGATGGA
CCACCCTGATGATCCCAGCGCACGGGTGACAGAGGCGCTGGCACGTGTTG
TGGTCACGTCCATGCAAGAGGCGCTAGAGAGCCAGCTTGGCTCAGAGTGG
CTGAGCCCTACGGAGGAGGAGTGGACTCCCGACCAGGCCATGGAGATGCT
GCAGATTGCCGTACAGTCGCAGTCAAGCGCAGGAGACGCACCTCCACAGC
CCCCAGCCAGCTTTCAAGACGTGCTGGATGCGCTTCTTGCACCCACCACA
TTGCAGCATATAGCACGACAGCTCACCCGTCGATGA
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