mRNA_11387 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170831
Unique NamemRNA_11387
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|170831 vs. uniprot
Match: A0A835YKD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKD2_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.050e-52
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 MQGFENGGRSRNNVVLLDNPLYITWGGFTTLVAAMYGLAAAIVAQQWDYWINLSAHDMPLMPPDELREVLSQFKANATR 237
            MQGFENGGRSRNNVVLLDNPLYITWGGFTTLVAAMYGLAAAIVAQQWDYWINLSAHDMPLMPPDELREVLSQFKANATR
Sbjct:    1 MQGFENGGRSRNNVVLLDNPLYITWGGFTTLVAAMYGLAAAIVAQQWDYWINLSAHDMPLMPPDELREVLSQFKANATR 79
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BLAST of jgi.p|Trimin1|170831 vs. uniprot
Match: A0A835YZY2_9STRA (Core-2/I-branching enzyme-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY2_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.400e-13
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:   22 GRSRNNVVLLDNPLYITWGGFTTLVAAMYGLAAAIV-AQQWDYWINLSAHDMPLMPPDELREVL 210
            G    N+ L+DNP+ ++WG F+ L+ A++GL++AI  + QWD+WINLS  DMPL+  DE+R VL
Sbjct:   98 GADPKNIKLVDNPVQVSWGRFSMLLTALHGLSSAIGWSSQWDFWINLSPADMPLLTADEMRLVL 161
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BLAST of jgi.p|Trimin1|170831 vs. uniprot
Match: A0A6H5KJT8_9PHAE (Protein xylosyltransferase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT8_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.690e-11
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:    4 QGFENG--------GRSRNNVVLLDNPLYITWGGFTTLVAAMYGLAAAIVAQ-QWDYWINLSAHDMPLMPPDELREVLSQFKANAT 234
            QG E+G        G    NV  +D  + +TWGGFT  + A+YGL  A+    +WDY+INLSA D+PL+  DE+  +L + KA  T
Sbjct:  132 QGVESGIERMLDERGNGERNVRFVDPAMPVTWGGFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLLRADEIAGILGEHKAGNT 217
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BLAST of jgi.p|Trimin1|170831 vs. uniprot
Match: A0A835Z5M7_9STRA (Protein xylosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.890e-11
Identity = 24/62 (38.71%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   34 NNVVLLDNPLYITWGGFTTLVAAMYGLAAAIVA-QQWDYWINLSAHDMPLMPPDELREVLSQ 216
            +N+V++ NP+ + WGG + L+ ++Y +A A+ + ++WDYW+N+S  DMP++P  E+ E+L++
Sbjct:  116 SNLVMVGNPVSVAWGGLSLLLTSVYLMAVAVDSGERWDYWVNVSPSDMPMLPQSEIMELLAE 177
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BLAST of jgi.p|Trimin1|170831 vs. uniprot
Match: D8LCA7_ECTSI (Protein xylosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA7_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 4.600e-9
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:   22 GRSRNNVVLLDNPLYITWGGFTTLVAAMYGLAAAIVAQ-QWDYWINLSAHDMPLMPPDELREVLSQFKANAT 234
            G    NV  +   + ITWGGFT  + A+YGL  A+    +WDY+INLSA D+PL+  DE+  +L + KA  T
Sbjct:   53 GNGERNVRFVSPAMPITWGGFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLLK-DEIAGILGEHKAGNT 123
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BLAST of jgi.p|Trimin1|170831 vs. uniprot
Match: A0A6H5L6Q9_9PHAE (Protein xylosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6Q9_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.530e-9
Identity = 28/71 (39.44%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:   10 FENGGRSRNNVVLLDNPLYITWGGFTTLVAAMYGLAAAIV-AQQWDYWINLSAHDMPLMPPDELREVLSQF 219
            FEN     +NV +L+  L ++WGG+T  + A++G+   +    +WD++INLSA D PL+P  EL  VL ++
Sbjct:  221 FENFIEEWDNVRMLEPALDVSWGGYTITLTAIFGICTMVQWNDEWDFFINLSASDFPLLPQSELTTVLGKY 291
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BLAST of jgi.p|Trimin1|170831 vs. uniprot
Match: A0A6H5KBR7_9PHAE (GT14 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR7_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 5.920e-7
Identity = 25/62 (40.32%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   34 NNVVLLDNPLYITWGGFTTLVAAMYGLAAAIVAQQ-WDYWINLSAHDMPLMPPDELREVLSQ 216
            +N  LL+    ++WGGF+  +A +YG+AAA++  + WDY+INLS  D P++  DE+   L +
Sbjct:  151 SNGKLLEPAGIVSWGGFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVTQDEMTLFLGE 212
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BLAST of jgi.p|Trimin1|170831 vs. uniprot
Match: D8LDZ1_ECTSI (Xylosyltransferase, family GT14 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ1_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.110e-6
Identity = 24/58 (41.38%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   46 LLDNPLYITWGGFTTLVAAMYGLAAAIVAQQ-WDYWINLSAHDMPLMPPDELREVLSQ 216
            LL+    ++WGGF+  +A +YG+AAA++  + WDY+INLS  D P++  DE+   L +
Sbjct:  215 LLEPAGIVSWGGFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVTQDEMTLFLGE 272
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BLAST of jgi.p|Trimin1|170831 vs. uniprot
Match: A0A7S3UGF2_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UGF2_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 5.040e-6
Identity = 26/69 (37.68%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:   34 NNVVLLDNPLYITWGGFTTLVAAMYGLAAAI--VAQQWDYWINLSAHDMPLMPPDELREVLSQFKANAT 234
            +NVV L +   +TWGG + L+  + GLA     +   WD++INLSA DMPL+P + +   L++    A+
Sbjct:    4 SNVVWLRSAA-VTWGGVSMLLVTLRGLATLRKELGDHWDFYINLSASDMPLLPQESIAHALAKMPRKAS 71
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BLAST of jgi.p|Trimin1|170831 vs. uniprot
Match: V4TYE6_CITCL (Uncharacterized protein n=4 Tax=Citrus TaxID=2706 RepID=V4TYE6_CITCL)

HSP 1 Score: 51.2 bits (121), Expect = 1.340e-5
Identity = 24/65 (36.92%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:   25 RSRNNVVLLDNPLYITWGGFTTLVAAMYGLAAAIVAQQWDYWINLSAHDMPLMPPDELREVLSQF 219
            R  NNV ++  P  +T+ G T L   ++ +A  +   +WD++INLSA D PL+  D+L E  S  
Sbjct:  113 RMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDL 177
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170831 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A835YKD2_9STRA2.050e-52100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZY2_9STRA5.400e-1350.00Core-2/I-branching enzyme-domain-containing protei... [more]
A0A6H5KJT8_9PHAE2.690e-1141.86Protein xylosyltransferase (Fragment) n=1 Tax=Ecto... [more]
A0A835Z5M7_9STRA6.890e-1138.71Protein xylosyltransferase n=1 Tax=Tribonema minus... [more]
D8LCA7_ECTSI4.600e-944.44Protein xylosyltransferase n=1 Tax=Ectocarpus sili... [more]
A0A6H5L6Q9_9PHAE5.530e-939.44Protein xylosyltransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A6H5KBR7_9PHAE5.920e-740.32GT14 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LDZ1_ECTSI1.110e-641.38Xylosyltransferase, family GT14 n=1 Tax=Ectocarpus... [more]
A0A7S3UGF2_9CHLO5.040e-637.68Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
V4TYE6_CITCL1.340e-536.92Uncharacterized protein n=4 Tax=Citrus TaxID=2706 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_76contigContig_76:576962..577201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170831|e_gw1.76.26.1
CAZyGT14
BRITEko00000,ko00001,ko00002,ko01000,ko01003
KEGG ReactionR05925
KEGG ModuleM00057
KEGG Pathwayko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG koko:K00771
EC2.4.2.26
GOsGO:0000003,GO:0000139,GO:0002009,GO:0002119,GO:0002164,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005996,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006139,GO:0006725,GO:0006790,GO:0006793,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0007610,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009791,GO:0009888,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016763,GO:0018991,GO:0019098,GO:0019321,GO:0019538,GO:0022008,GO:0022414,GO:0030154,GO:0030158,GO:0030166,GO:0030201,GO:0030202,GO:0030203,GO:0030204,GO:0030206,GO:0030210,GO:0031090,GO:0031224,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032504,GO:0033319,GO:0033554,GO:0034097,GO:0034605,GO:0034641,GO:0034645,GO:0035252,GO:0040025,GO:0042221,GO:0042285,GO:0042732,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0048513,GO:0048519,GO:0048523,GO:0048569,GO:0048583,GO:0048585,GO:0048609,GO:0048679,GO:0048681,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051716,GO:0051960,GO:0051961,GO:0055086,GO:0060284,GO:0060429,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:0140096,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:1903510,GO:2000026
Preferred nameXYLT2
Descriptionacetylglucosaminyltransferase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0799@1|root,KOG0799@2759|Eukaryota
Evalue9.06e-10
Seed ortholog2880.D7FMI2
Hectar predicted targeting categorysignal anchor
TranscriptId171153
TrackFilteredModels1
ProteinId170831
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170831gene_11387Tribonema minus UTEX_B_3156 geneContig_76 576962..577201 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11387_1exon_11387_1Tribonema minus UTEX_B_3156 exonContig_76 576962..577201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11387CDS_11387Tribonema minus UTEX_B_3156 CDSContig_76 576962..577201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170831Trimin1|170831|e_gw1.76.26.1Tribonema minus UTEX_B_3156 polypeptideContig_76 576962..577201 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11387 ID=mRNA_11387|Name=jgi.p|Trimin1|170831|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=240bp|location=Sequence derived from alignment at Contig_76:576962..577201+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGGCTTTGAAAATGGAGGAAGGTCGCGCAACAACGTCGTGCTGCT
GGATAACCCCCTATACATAACGTGGGGTGGCTTTACAACGCTCGTAGCGG
CCATGTATGGCCTTGCTGCAGCCATTGTGGCGCAGCAGTGGGACTATTGG
ATTAACCTGAGCGCGCATGACATGCCCCTCATGCCGCCGGACGAGCTGCG
GGAGGTGTTGTCACAGTTCAAAGCAAATGCCACCAGGTAA
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protein sequence of jgi.p|Trimin1|170831

>Trimin1|170831|e_gw1.76.26.1 ID=Trimin1|170831|e_gw1.76.26.1|Name=jgi.p|Trimin1|170831|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=80bp
MQGFENGGRSRNNVVLLDNPLYITWGGFTTLVAAMYGLAAAIVAQQWDYW
INLSAHDMPLMPPDELREVLSQFKANATR*
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mRNA from alignment at Contig_76:576962..577201+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11387 ID=mRNA_11387|Name=jgi.p|Trimin1|170831|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=240bp|location=Sequence derived from alignment at Contig_76:576962..577201+ (Tribonema minus UTEX_B_3156 )
ATGCAGGGCTTTGAAAATGGAGGAAGGTCGCGCAACAACGTCGTGCTGCT
GGATAACCCCCTATACATAACGTGGGGTGGCTTTACAACGCTCGTAGCGG
CCATGTATGGCCTTGCTGCAGCCATTGTGGCGCAGCAGTGGGACTATTGG
ATTAACCTGAGCGCGCATGACATGCCCCTCATGCCGCCGGACGAGCTGCG
GGAGGTGTTGTCACAGTTCAAAGCAAATGCCACCAGGTAA
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Coding sequence (CDS) from alignment at Contig_76:576962..577201+

>mRNA_11387 ID=mRNA_11387|Name=jgi.p|Trimin1|170831|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=240bp|location=Sequence derived from alignment at Contig_76:576962..577201+ (Tribonema minus UTEX_B_3156 )
ATGCAGGGCTTTGAAAATGGAGGAAGGTCGCGCAACAACGTCGTGCTGCT
GGATAACCCCCTATACATAACGTGGGGTGGCTTTACAACGCTCGTAGCGG
CCATGTATGGCCTTGCTGCAGCCATTGTGGCGCAGCAGTGGGACTATTGG
ATTAACCTGAGCGCGCATGACATGCCCCTCATGCCGCCGGACGAGCTGCG
GGAGGTGTTGTCACAGTTCAAAGCAAATGCCACCAGGTAA
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