mRNA_11317 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352368
Unique NamemRNA_11317
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|352368 vs. uniprot
Match: A0A835ZBQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ4_9STRA)

HSP 1 Score: 808 bits (2087), Expect = 1.420e-293
Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 1
Query:    1 MAITIRMVEMRIELTVEVDDGGDGGMRRVHLSFEPRKTAADVLEAVQADRGSRGTASETEDPQPAADAPLSLLHYGKRLTKKRQLRALPGLSCAMTLQAVPAQGVSMKLFVKTLTGACFELDDVLSGDTIDALKEMIQDLEGILPDQQRIIFAGRQLEDGRSVADYSIQKEHTLHLVLRLRGGGCGPSGLQFADVTNDGAMERRSVSDDAPVWRTVRRGINMEGYCRNLRCEARVTLVIAPVGMAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAKEGGELVRGAWRTAGDDKYDRFRESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGRLQPDECAVCLRGFGSGDGSSKATSTPCGYRYHALCLASWRECSHASCSKCPTCRAVL 1200
            MAITIRMVEMRIELTVEVDDGGDGGMRRVHLSFEPRKTAADVLEAVQADRGSRGTASETEDPQPAADAPLSLLHYGKRLTKKRQLRALPGLSCAMTLQAVPAQGVSMKLFVKTLTGACFELDDVLSGDTIDALKEMIQDLEGILPDQQRIIFAGRQLEDGRSVADYSIQKEHTLHLVLRLRGGGCGPSGLQFADVTNDGAMERRSVSDDAPVWRTVRRGINMEGYCRNLRCEARVTLVIAPVGMAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAKEGGELVRGAWRTAGDDKYDRFRESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGRLQPDECAVCLRGFGSGDGSSKATSTPCGYRYHALCLASWRECSHASCSKCPTCRAVL
Sbjct:    1 MAITIRMVEMRIELTVEVDDGGDGGMRRVHLSFEPRKTAADVLEAVQADRGSRGTASETEDPQPAADAPLSLLHYGKRLTKKRQLRALPGLSCAMTLQAVPAQGVSMKLFVKTLTGACFELDDVLSGDTIDALKEMIQDLEGILPDQQRIIFAGRQLEDGRSVADYSIQKEHTLHLVLRLRGGGCGPSGLQFADVTNDGAMERRSVSDDAPVWRTVRRGINMEGYCRNLRCEARVTLVIAPVGMAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAKEGGELVRGAWRTAGDDKYDRFRESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGRLQPDECAVCLRGFGSGDGSSKATSTPCGYRYHALCLASWRECSHASCSKCPTCRAVL 400          
BLAST of jgi.p|Trimin1|352368 vs. uniprot
Match: A0A835ZEG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEG5_9STRA)

HSP 1 Score: 523 bits (1346), Expect = 3.390e-180
Identity = 269/391 (68.80%), Postives = 303/391 (77.49%), Query Frame = 1
Query:   34 IELTVEVDDGGDGGMRRVHLSFEPRKTAADVLEAVQADRGSRGTASETEDPQPAADAPLSLLHYGKRLTKKRQLRALPGLSCAMTLQAVPAQGV--SMKLFVKTLTGACFELDDVLSGDTIDALKEMIQDLEGILPDQQRIIFAGRQLEDGRSVADYSIQKEHTLHLVLRLRGGGCGPSGLQFADVTNDGAMERRSVSDDAPVWRTVRRGINMEGYCRNLRCEARVTLVIAPVGMAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAKEGGELVRGAWRTAGDDKYDRFRESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGRLQPDECAVCLRGFGSGDGSSKATSTPCGYRYHALCLASWRECSHASCSKCPTCRAVL 1200
            IELTVEVDDG +GGM+RVHL  EP  T  DVL+A+QA RGSRGTAS  E     AD+   L   G+RL +   L  LP L+CAMTLQA  A G   S  ++VKTL G    L  VL  DT+D LK+ I D EGI  DQQR+IFAG+QLED R+V DYS++++ TLHLVLRLRGGGCGPS LQFADV+NDGA+ERRS S DAP WRTVRRG+NMEGYCR+ RC+AR  LVIAP+GMAAFPLGS C CP+C SAITPVTCGF ACAWTYDGAKE GELVRGAWRTAGDDKY+RFRESDNM TWSRLVLVAKPAVKVK  P A  A++    +AAG  +PDECAV LRGFG   G+   T+T CG+RYHALCLA WRECSHASCSKCPTCRA L
Sbjct:   61 IELTVEVDDGSEGGMQRVHLKLEPHNTVKDVLKALQAHRGSRGTASTEE----LADSHFWLELNGERLIRYWPLATLPSLACAMTLQAPAAPGPQGSRAIYVKTLRGQSLPLSGVLPCDTVDILKDRISDCEGIPADQQRLIFAGKQLEDSRTVDDYSMERDSTLHLVLRLRGGGCGPSSLQFADVSNDGAIERRSFSQDAPRWRTVRRGLNMEGYCRDARCKARGALVIAPIGMAAFPLGSRCTCPMCGSAITPVTCGFNACAWTYDGAKEDGELVRGAWRTAGDDKYERFRESDNMATWSRLVLVAKPAVKVKSDPGAAVADAVDNKEAAGASEPDECAVGLRGFGGRSGA--VTTTRCGHRYHALCLAGWRECSHASCSKCPTCRAAL 445          
BLAST of jgi.p|Trimin1|352368 vs. uniprot
Match: A0A836CAN6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN6_9STRA)

HSP 1 Score: 272 bits (695), Expect = 4.260e-84
Identity = 147/312 (47.12%), Postives = 188/312 (60.26%), Query Frame = 1
Query:  283 MTLQAVPAQGVSMKLFVKTLTGACFELDDVLSGDTIDALKEMIQDLEGILP--DQQRIIFAGRQLEDGRSVADYSIQKEHTLHLVLRLRGGGCG--PSGLQFADVTNDGAMERRSVSDDAPVWRTVRRGINMEGYCRNLRCEARVTLVIAPVGMAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAKEGGELVRGAWRTAGDDKYDRFRESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGRLQPDECAVCLRGFGSGDGSSKATSTPCGYRYHALCLASWREC----SHASCSKCPTCRA 1194
            MTLQAVPA    + +FVK+L+G  F +  +   DT+D + E ++D EG+L   D+QR++FAG+QLE GR++ ++ IQ + TLH++ RLRGG     P  + FADV+   A++    S DAP WRTV  G+N+EGYCRN RC AR  LVIA VGM AF LG+ C CP C SAI P TCGFYAC W Y+GAK  G  +   W TAGD  YD   E  NM  WSRLVLVAKP              +SGA    GR  P++C +CL      + ++      CG+RYHA CL  W++     SH S   CP CRA
Sbjct:    1 MTLQAVPADEHGINIFVKSLSGKTFTVHGLSCSDTVDTIMEAVEDKEGVLNLFDEQRLVFAGQQLETGRTLYEHRIQNDSTLHMMGRLRGGSSSLAPLKIPFADVSKTSAIQHIRFSPDAPSWRTVVTGLNLEGYCRNPRCAARNELVIANVGMDAFTLGARCACPQCSSAILPHTCGFYACTWKYEGAKTDGVFMCSPWYTAGDTAYDLVNEHGNMALWSRLVLVAKPI-------------ASGAKDKDGRAVPNDCGLCLMSLAESENTAVRN---CGHRYHATCLTRWQQQYSGGSHRS--TCPACRA 294          
BLAST of jgi.p|Trimin1|352368 vs. uniprot
Match: A0A836C8N2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N2_9STRA)

HSP 1 Score: 272 bits (696), Expect = 4.890e-84
Identity = 149/329 (45.29%), Postives = 197/329 (59.88%), Query Frame = 1
Query:  226 GKRLTKKRQLRALPGLSCAMTLQAVPAQGVSMKLFVKTLTGACFELDDVLSGDTIDALKEMIQDLEGILPDQQRIIFAGRQLEDGRSVADYSIQKEHTLHLVLRLRGGGCGPS-GLQFADVTNDGAMERRSVSDDAPVWRTVRRGINMEGYCRNLRCEARVTLVIAPVGMAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAKEGGELVRGAWRTAGDDKYDRFRESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGRLQPDECAVCLRGFGSGDGSSKATSTPCGYRYHALCLASWRECSHASCSKCPTCRAVL*GV 1209
            G +L + +QLR L  L+ A TL+AVPA+     +FVKTL+G+   +  +   DT+ +L+E I+  EG+  DQQ++ FAG++L+   ++ D+ I    T+H+VL L GG   P   + FADV+   AM+R S   DAP WRT   G+NMEGYCRN  C+AR  LVI+ +GM AF LGS C CP C + +TPVTCGFYAC W Y+GAK  G L+R  W TA DD Y R  E  NM +WSRLVLVAKP           A+++   DK A    P ECAVCL    + +      +  CG+RY+A CL  W+E S  +   C  CR  L GV
Sbjct:    4 GTKLGRHKQLRKLDNLAAATTLRAVPAKTPGPCIFVKTLSGSTITVHGLSHSDTVASLEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIGSGSTVHMVLSLCGGRSMPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTLGSQCACPECGADVTPVTCGFYACTWMYEGAKTDGMLMRSPWHTASDDLYHRVNEHGNMASWSRLVLVAKP----------IASDAQDKDKDA---LPSECAVCLMPLAAAE---HTVTRACGHRYYATCLQRWQESSIGA--TCTACRTELHGV 314          
BLAST of jgi.p|Trimin1|352368 vs. uniprot
Match: A0A835Z319_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z319_9STRA)

HSP 1 Score: 240 bits (612), Expect = 1.200e-69
Identity = 139/314 (44.27%), Postives = 179/314 (57.01%), Query Frame = 1
Query:  325 LFVKTLTGACFELDDVLSGDTIDALKEMIQDLEGILPDQQRIIFAGRQLEDGRSVADYSIQ-----KEHTLHLVLRLRGGGCGPSGLQFADVTNDGAMERRSVSDDAPVWRTVRRGINMEGYCRNLRCEARVTLVIAPVGMAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAKEGG-ELVRGAWRTAGDDKYDRFR------ESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGR----------LQPDECAVCLRGFGSGDGSSKATSTPCGYRYHALCLASWRECSHASCSKCPTCRAVL 1200
            ++VKTLTG    L  V++  T+D LK+M QD + I PDQQR+ + G+ LED R+V+DY ++     +E TL L LRLRGGGC   G +FADV +  A+   + S +AP WR    G+N+EG C    C AR  +VI  VGM AF LG  C CP+C     PVTC F+ACAW ++G K GG   + G WR AGD  Y+RF          +M  W RLVLVAK     + + R  AA+++ A   AG            Q D+CAVCL    S   S +A  TPCG+ YH  CL +WR  S AS   CP+CRA L
Sbjct:  165 VYVKTLTGKTVALAAVVADTTVDKLKQMFQDAQSIPPDQQRLRWRGKMLEDSRTVSDYGMKFCPQLREPTLQLELRLRGGGCVTGG-RFADVADLNAISHMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGKMVIRGVGMGAFTLGDACACPLCRRPFAPVTCAFHACAWMFEGVKAGGGAALGGVWREAGD-AYERFNTGADGESGGSMVEWERLVLVAK----YRGRKRIPAADAAAAGGVAGEPAAALASGSGAQVDDCAVCLEPLHSWHVSLQAAVTPCGHVYHEACLKAWRRSSSASNGTCPSCRANL 472          
BLAST of jgi.p|Trimin1|352368 vs. uniprot
Match: A0A835YTW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW7_9STRA)

HSP 1 Score: 239 bits (609), Expect = 3.300e-69
Identity = 137/304 (45.07%), Postives = 180/304 (59.21%), Query Frame = 1
Query:  325 LFVKTLTGACFELDDVLSGDTIDALKEMIQDLEGILPDQQRIIFAGRQLEDGRSVADYSIQ-----KEHTLHLVLRLRGGGCGPSGLQFADVTNDGAMERRSVSDDAPVWRTVRRGINMEGYCRNLRCEARVTLVIAPVGMAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAKEGGEL-VRGAWRTAGDDKYDRFR------ESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGRLQPDECAVCLRGFGSGDGSSKATSTPCGYRYHALCLASWRECSHASCSKCPTCRAVL 1200
            ++VKTLTG    L  V++  T+D LK+MI D EGI PDQQR+I+ G+ LED R+V+DY ++     +E ++ ++LRLRGGG   SG +FADV +  A+ R + S +AP WR    G+N+EG C    C AR  +VI  VGM AF LG  C CP+C     PVTC F ACAW ++G K GG + + G WR AGD  Y+RF          +M  W RLVLVAK   +V+P     AA +SG+       Q D+CAVCL    S + S +A  TPCG+ YH  CL +WR  S  S   C +C A L
Sbjct:  140 VYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSG-RFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGD-AYERFNTGADGESGGSMVEWERLVLVAKCRGRVRP----AAALASGSS-----AQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASCCADL 432          
BLAST of jgi.p|Trimin1|352368 vs. uniprot
Match: A0A835YW29_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW29_9STRA)

HSP 1 Score: 226 bits (575), Expect = 2.490e-68
Identity = 112/158 (70.89%), Postives = 125/158 (79.11%), Query Frame = 1
Query:  730 MAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAKEGGELVRGAWRTAGDDKYDRFRESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGRLQPDECAVCLRGFGSGDGSSKATS-TPCGYRYHALCLASWRECSHASCSKCPTCRAVL 1200
            MAAFPLG+ C CP+C+  I PVTCGFYACAWTYDGAKEGGELVRGAWRTAG DKY+RFRESDN+ TWSRLVLVAKPA++VK +P A  A++  + +AA     DECAVCLRGFG           T CG+RYHALCLASWRECSHASCSKCPT RA L
Sbjct:    1 MAAFPLGARCWCPLCHDPIAPVTCGFYACAWTYDGAKEGGELVRGAWRTAGGDKYERFRESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDSKEAAA----DECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRECSHASCSKCPTSRAAL 154          
BLAST of jgi.p|Trimin1|352368 vs. uniprot
Match: A0A836CBY2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBY2_9STRA)

HSP 1 Score: 207 bits (526), Expect = 4.200e-59
Identity = 120/281 (42.70%), Postives = 158/281 (56.23%), Query Frame = 1
Query:  397 LKEMIQDLEGILPDQQRIIFAGRQLEDGRSVADYSIQKE----HTLHLVLRLRGGGCGPSGLQFADVTNDGAMERRSVSDDAPVWRTVRRGINMEGYCRNLRCEARVTLVIAPVGMAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAK-EGGELVRGAWRTAGDDKYDRFRE------SDNMTTWSRLVLVAKPAVKVKPKPRATAA--ESSGADKAAGRLQPDECAVCLRGFGSGDGSSKATSTPCGYRYHALCLASWRECSHASCSKCPTCRAVL 1200
            LK++I DLEGI P+QQR+I+ G+QLED RS+++Y I  +      LHLVLR+RGGG  P+   FADV +   + R + SD  P WR    G+N+EG C N  C A   +VI  +GM AF LG  C CP+C + I P+TC F+ C W ++G K +    +  AWR AGD  Y+RF        S  M  W RLVL+AK    +      TA     SG   ++   Q D+CAVCL    +   S     TPCG+ YH  CL +W+ CS A   +CP CRA L
Sbjct:   16 LKQIITDLEGIPPEQQRLIWCGKQLEDRRSLSEYHIDPDINDLPALHLVLRMRGGG--PT---FADVADANGISRIAFSDTGPKWRIACEGLNIEGLCTNAECAAHGKMVIHKIGMGAFTLGGACACPLCDAPIVPLTCAFHRCVWMFEGVKADSCAALSTAWREAGDT-YERFNTGTEGSGSGAMVEWERLVLIAKGRDSIHAAAAYTAVVCSKSGELTSSSGTQLDDCAVCLEPLRTLFASF--VKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADL 288          
BLAST of jgi.p|Trimin1|352368 vs. uniprot
Match: A0A6A3IE52_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3IE52_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.640e-55
Identity = 137/335 (40.90%), Postives = 180/335 (53.73%), Query Frame = 1
Query:  223 YGKRLTKKRQLRAL-PGL--SCAMTLQAVPAQGVSMKL-FVKTLTGACFELDDVLSGDTIDALKEMIQDLEGILPDQQRIIFAGRQLEDGRSVADYSIQKEHTLHLVLRLRGGGCGPSGLQFADVTNDGAMERRSVSDDAPVWRTVRRGINMEGYCRNLRCEARVTLVIAPVGMAAFPL---GSLCPCPVCYSAITPVTCGFYACAWTYDGAK-EGGELVRGAWRTAGDDKYDRFR--ESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGRLQPD-ECAVCLRGFGSGDGSSKATSTPCGYRYHALCLASWRECSHA--SCSKCPTC 1188
            YG RL +   L +L P L   C   L +    G S  + ++KTLTG    ++   + +TI+ +K  IQ+ EGI PDQQRIIFAG+QLEDGR ++DY+IQ   TLHLVLRLRGG   P    FADV++         S  AP WR  R+G+N+EG C N  C A   LVI P G   F L   G +  CP C S + PVTCGFY CAW ++G K  GG      W+    +KY RF   E+     W  L+++      VKP   A AAE   + + A RL  D  CAVC     SG G+     + CG+ +H  C+ +W + S    + +KCP C
Sbjct:   66 YGIRLNEDHLLESLLPDLLHGCPRLLASTSLVGSSSAMIYIKTLTGKTTHVN-CHAANTIEEIKYDIQEQEGIPPDQQRIIFAGKQLEDGRKLSDYNIQYGSTLHLVLRLRGGYVEPR--CFADVSDGSISVEHEFSRTAPEWRICRKGLNIEGRCMNRTCIAYHELVIHPAGFEMFNLRKDGDV-TCPKCRSKVKPVTCGFYDCAWKFEGVKARGGFFTSSPWQIVSGEKYQRFDADETSGSIEWESLLIL------VKPLKEAVAAELVESAQEA-RLHSDLVCAVCWTEILSGSGAG----SECGHLFHCGCIENWSKWSEGQKTLTKCPVC 385          
BLAST of jgi.p|Trimin1|352368 vs. uniprot
Match: A0A835YSA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA3_9STRA)

HSP 1 Score: 196 bits (498), Expect = 4.150e-55
Identity = 112/285 (39.30%), Postives = 157/285 (55.09%), Query Frame = 1
Query:  388 IDALKEMIQDLEGILPDQQRIIFAGRQLEDGRSVADYSI----QKEH--TLHLVLRLRGGGCGPSGLQFADVTNDGAMERRSVSDDAPVWRTVRRGINMEGYCRNLRCEARVTLVIAPVGMAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAK-EGGELVRGAWRTAGDDKYDRFR------ESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGR-LQPDECAVCLRGFGSGDGSSKATSTPCGYRYHALCLASWRECSHASCSKCPTCRAVL 1200
            +  +K+ IQ  EG  P+QQR+I++G++L+D RS+  + +       H  TL L+ RLRGGG   SG  FADV +   + R + S+ AP WR    G+N+EG C N  C A   +VI  +GM AF LG  C CP+C + I P+TC F+ C W ++G K +GG  +  AWR AGD  Y+RF        S  M  W R +L+AK         + T A ++  + A+    Q D+CAVCL    +    +    TPCG+ YH  CL +W+ CS A   +CP CRA L
Sbjct:    6 VHEVKQTIQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDNIHPPTLQLIPRLRGGG-SLSGGMFADVADANGISRIAFSETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWREAGDS-YERFNTGTEGTSSGAMVEWERFMLIAKGR-------KFTCARAADTEDASSNGTQLDDCAVCLEPLRTR--RAPFVKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADL 279          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352368 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBQ4_9STRA1.420e-293100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEG5_9STRA3.390e-18068.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAN6_9STRA4.260e-8447.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C8N2_9STRA4.890e-8445.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z319_9STRA1.200e-6944.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTW7_9STRA3.300e-6945.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YW29_9STRA2.490e-6870.89RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A836CBY2_9STRA4.200e-5942.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6A3IE52_9STRA1.640e-5540.90Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A835YSA3_9STRA4.150e-5539.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_116contigContig_116:453735..455598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352368|estExt_Genemark1.C_Ctg_1160075
DescriptionUbiquitin family
COG categoryO
Max annot lvl4776|Peronosporales
EggNOG OGsCOG5272@1|root,KOG0001@2759|Eukaryota,3QEPQ@4776|Peronosporales
Evalue3.93e-47
Seed ortholog4792.ETI43370
Hectar predicted targeting categoryother localisation
TranscriptId352690
TrackFilteredModels1
ProteinId352368
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352368gene_11317Tribonema minus UTEX_B_3156 geneContig_116 453735..455598 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11317_2exon_11317_2Tribonema minus UTEX_B_3156 exonContig_116 453735..455291 -
exon_11317_1exon_11317_1Tribonema minus UTEX_B_3156 exonContig_116 455569..455598 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11317UTR3_11317Tribonema minus UTEX_B_3156 three_prime_UTRContig_116 453735..454118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11317CDS_11317Tribonema minus UTEX_B_3156 CDSContig_116 455569..455598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352368Trimin1|352368|estExt_Genemark1.C_Ctg_1160075Tribonema minus UTEX_B_3156 polypeptideContig_116 454119..455598 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11317 ID=mRNA_11317|Name=jgi.p|Trimin1|352368|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1587bp|location=Sequence derived from alignment at Contig_116:453735..455598- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATCACCATTCGCATGGTGGAGATGCGCATTGAGCTTACCGTGGA
AGTCGACGACGGCGGTGACGGCGGCATGCGGCGTGTCCACCTGAGCTTTG
AGCCTCGTAAAACGGCAGCTGATGTTCTCGAAGCAGTGCAGGCAGACCGC
GGCAGCCGTGGTACCGCATCGGAGACCGAGGACCCTCAGCCGGCTGCGGA
CGCCCCCTTGTCTCTGCTGCACTACGGCAAGCGGCTCACCAAAAAGAGGC
AGCTCAGAGCTCTTCCTGGTCTCTCCTGCGCCATGACCCTGCAAGCAGTG
CCCGCTCAGGGTGTTTCTATGAAACTGTTCGTGAAAACACTCACCGGCGC
CTGCTTCGAACTGGACGACGTGCTCAGCGGCGACACGATAGATGCGCTGA
AGGAGATGATCCAAGACCTCGAGGGCATACTGCCTGATCAGCAACGGATC
ATATTCGCCGGCAGACAGCTCGAGGACGGCCGCTCTGTCGCCGACTACAG
CATCCAGAAGGAGCACACCCTGCACCTGGTCCTCAGGCTAAGAGGCGGCG
GCTGCGGCCCGAGCGGCCTGCAGTTCGCGGACGTGACCAACGACGGCGCC
ATGGAGCGCCGCAGCGTCTCGGACGACGCGCCGGTGTGGCGCACGGTGCG
CAGGGGGATCAACATGGAGGGCTACTGCCGCAACCTGCGCTGCGAGGCGC
GCGTCACGCTGGTCATCGCCCCCGTAGGCATGGCAGCGTTCCCGCTCGGC
TCATTGTGCCCATGCCCCGTGTGCTACAGCGCCATCACCCCCGTCACGTG
CGGCTTCTACGCGTGCGCGTGGACGTACGATGGCGCCAAGGAGGGAGGCG
AGCTGGTGCGCGGCGCCTGGCGCACCGCTGGCGACGACAAATACGATCGC
TTCCGCGAGAGCGACAACATGACCACGTGGTCGCGCCTCGTGCTGGTGGC
CAAGCCCGCTGTCAAGGTCAAGCCGAAGCCGCGCGCTACGGCTGCTGAGT
CATCAGGTGCCGATAAGGCTGCTGGACGGCTGCAGCCGGACGAGTGCGCG
GTGTGCCTCAGGGGCTTCGGCAGCGGCGATGGCAGCAGCAAGGCCACGTC
GACGCCGTGCGGTTACCGCTACCATGCGCTGTGCCTCGCCAGCTGGCGCG
AGTGCAGCCACGCCAGCTGCAGCAAGTGCCCCACGTGCCGCGCCGTCCTG
TGAGGCGTTGAGCGGTGCTGCTGCGCAGGTATGTATGCAAGCCCTTGCAG
CGATGTCACCGAAAACCTGTCTTCTGCGCAGGGGGAACAGTGACCCGGTG
GTTCAGGTTCAGGAACGGCACAGTCTATGGTTCGTGAGCGGTCAAGGACC
TCAAGGCCGTCGAGTACAGTAGTCATAGACCAGTTTACACAGCTTCACAC
GCTCTGTTACAGCGAGCTAGGCAATGGCTCTTTTCGGCATCAAAGTATCT
CTTTGCGCGGATTCGTGTTTCCTGCATTACCATAAGATGACATTTCTCAG
GCTGGCATAACACAAATTTGCATGCCCAAGATGAGGTGTCATTGTGGTAG
GAGTTCAACATGGCACATTTGCTAAGTATATACGAAC
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protein sequence of jgi.p|Trimin1|352368

>Trimin1|352368|estExt_Genemark1.C_Ctg_1160075 ID=Trimin1|352368|estExt_Genemark1.C_Ctg_1160075|Name=jgi.p|Trimin1|352368|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=401bp
MAITIRMVEMRIELTVEVDDGGDGGMRRVHLSFEPRKTAADVLEAVQADR
GSRGTASETEDPQPAADAPLSLLHYGKRLTKKRQLRALPGLSCAMTLQAV
PAQGVSMKLFVKTLTGACFELDDVLSGDTIDALKEMIQDLEGILPDQQRI
IFAGRQLEDGRSVADYSIQKEHTLHLVLRLRGGGCGPSGLQFADVTNDGA
MERRSVSDDAPVWRTVRRGINMEGYCRNLRCEARVTLVIAPVGMAAFPLG
SLCPCPVCYSAITPVTCGFYACAWTYDGAKEGGELVRGAWRTAGDDKYDR
FRESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGRLQPDECA
VCLRGFGSGDGSSKATSTPCGYRYHALCLASWRECSHASCSKCPTCRAVL
*
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mRNA from alignment at Contig_116:453735..455598-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11317 ID=mRNA_11317|Name=jgi.p|Trimin1|352368|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1864bp|location=Sequence derived from alignment at Contig_116:453735..455598- (Tribonema minus UTEX_B_3156 )
ATGGCCATCACCATTCGCATGGTGGAGATGGTCCTTAGGCCTGAGGTTGC TGCGGGGCAGCAGTCTGAGCTCGGCTGCTTTCAAAGCATTGGCAGCTTCA CCTTCCTCCCTGGCGACAAGCTATCCAAGCCAAACAGCGGTATTTCGAGC AGACAGGGCGCAACCTGCACGAGTTGTGGTACCGCGGCCTTTTGCTCAAG GACAGGGAAGATCTGGCTGCCTTCGTGCCCGGACGAGCTCGACAAGCAGA CCCTTCACCGCTTCGCTGCTCTTGTGCTGCCTGAGCGCAACTCTTGTGCT GCCTGAGCGCATTGAGCTTACCGTGGAAGTCGACGACGGCGGTGACGGCG GCATGCGGCGTGTCCACCTGAGCTTTGAGCCTCGTAAAACGGCAGCTGAT GTTCTCGAAGCAGTGCAGGCAGACCGCGGCAGCCGTGGTACCGCATCGGA GACCGAGGACCCTCAGCCGGCTGCGGACGCCCCCTTGTCTCTGCTGCACT ACGGCAAGCGGCTCACCAAAAAGAGGCAGCTCAGAGCTCTTCCTGGTCTC TCCTGCGCCATGACCCTGCAAGCAGTGCCCGCTCAGGGTGTTTCTATGAA ACTGTTCGTGAAAACACTCACCGGCGCCTGCTTCGAACTGGACGACGTGC TCAGCGGCGACACGATAGATGCGCTGAAGGAGATGATCCAAGACCTCGAG GGCATACTGCCTGATCAGCAACGGATCATATTCGCCGGCAGACAGCTCGA GGACGGCCGCTCTGTCGCCGACTACAGCATCCAGAAGGAGCACACCCTGC ACCTGGTCCTCAGGCTAAGAGGCGGCGGCTGCGGCCCGAGCGGCCTGCAG TTCGCGGACGTGACCAACGACGGCGCCATGGAGCGCCGCAGCGTCTCGGA CGACGCGCCGGTGTGGCGCACGGTGCGCAGGGGGATCAACATGGAGGGCT ACTGCCGCAACCTGCGCTGCGAGGCGCGCGTCACGCTGGTCATCGCCCCC GTAGGCATGGCAGCGTTCCCGCTCGGCTCATTGTGCCCATGCCCCGTGTG CTACAGCGCCATCACCCCCGTCACGTGCGGCTTCTACGCGTGCGCGTGGA CGTACGATGGCGCCAAGGAGGGAGGCGAGCTGGTGCGCGGCGCCTGGCGC ACCGCTGGCGACGACAAATACGATCGCTTCCGCGAGAGCGACAACATGAC CACGTGGTCGCGCCTCGTGCTGGTGGCCAAGCCCGCTGTCAAGGTCAAGC CGAAGCCGCGCGCTACGGCTGCTGAGTCATCAGGTGCCGATAAGGCTGCT GGACGGCTGCAGCCGGACGAGTGCGCGGTGTGCCTCAGGGGCTTCGGCAG CGGCGATGGCAGCAGCAAGGCCACGTCGACGCCGTGCGGTTACCGCTACC ATGCGCTGTGCCTCGCCAGCTGGCGCGAGTGCAGCCACGCCAGCTGCAGC AAGTGCCCCACGTGCCGCGCCGTCCTGTGAGGCGTTGAGCGGTGCTGCTG CGCAGGTATGTATGCAAGCCCTTGCAGCGATGTCACCGAAAACCTGTCTT CTGCGCAGGGGGAACAGTGACCCGGTGGTTCAGGTTCAGGAACGGCACAG TCTATGGTTCGTGAGCGGTCAAGGACCTCAAGGCCGTCGAGTACAGTAGT CATAGACCAGTTTACACAGCTTCACACGCTCTGTTACAGCGAGCTAGGCA ATGGCTCTTTTCGGCATCAAAGTATCTCTTTGCGCGGATTCGTGTTTCCT GCATTACCATAAGATGACATTTCTCAGGCTGGCATAACACAAATTTGCAT GCCCAAGATGAGGTGTCATTGTGGTAGGAGTTCAACATGGCACATTTGCT AAGTATATACGAAC
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Coding sequence (CDS) from alignment at Contig_116:453735..455598-

>mRNA_11317 ID=mRNA_11317|Name=jgi.p|Trimin1|352368|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1203bp|location=Sequence derived from alignment at Contig_116:453735..455598- (Tribonema minus UTEX_B_3156 )
ATGGCCATCACCATTCGCATGGTGGAGATGCGCATTGAGCTTACCGTGGA
AGTCGACGACGGCGGTGACGGCGGCATGCGGCGTGTCCACCTGAGCTTTG
AGCCTCGTAAAACGGCAGCTGATGTTCTCGAAGCAGTGCAGGCAGACCGC
GGCAGCCGTGGTACCGCATCGGAGACCGAGGACCCTCAGCCGGCTGCGGA
CGCCCCCTTGTCTCTGCTGCACTACGGCAAGCGGCTCACCAAAAAGAGGC
AGCTCAGAGCTCTTCCTGGTCTCTCCTGCGCCATGACCCTGCAAGCAGTG
CCCGCTCAGGGTGTTTCTATGAAACTGTTCGTGAAAACACTCACCGGCGC
CTGCTTCGAACTGGACGACGTGCTCAGCGGCGACACGATAGATGCGCTGA
AGGAGATGATCCAAGACCTCGAGGGCATACTGCCTGATCAGCAACGGATC
ATATTCGCCGGCAGACAGCTCGAGGACGGCCGCTCTGTCGCCGACTACAG
CATCCAGAAGGAGCACACCCTGCACCTGGTCCTCAGGCTAAGAGGCGGCG
GCTGCGGCCCGAGCGGCCTGCAGTTCGCGGACGTGACCAACGACGGCGCC
ATGGAGCGCCGCAGCGTCTCGGACGACGCGCCGGTGTGGCGCACGGTGCG
CAGGGGGATCAACATGGAGGGCTACTGCCGCAACCTGCGCTGCGAGGCGC
GCGTCACGCTGGTCATCGCCCCCGTAGGCATGGCAGCGTTCCCGCTCGGC
TCATTGTGCCCATGCCCCGTGTGCTACAGCGCCATCACCCCCGTCACGTG
CGGCTTCTACGCGTGCGCGTGGACGTACGATGGCGCCAAGGAGGGAGGCG
AGCTGGTGCGCGGCGCCTGGCGCACCGCTGGCGACGACAAATACGATCGC
TTCCGCGAGAGCGACAACATGACCACGTGGTCGCGCCTCGTGCTGGTGGC
CAAGCCCGCTGTCAAGGTCAAGCCGAAGCCGCGCGCTACGGCTGCTGAGT
CATCAGGTGCCGATAAGGCTGCTGGACGGCTGCAGCCGGACGAGTGCGCG
GTGTGCCTCAGGGGCTTCGGCAGCGGCGATGGCAGCAGCAAGGCCACGTC
GACGCCGTGCGGTTACCGCTACCATGCGCTGTGCCTCGCCAGCTGGCGCG
AGTGCAGCCACGCCAGCTGCAGCAAGTGCCCCACGTGCCGCGCCGTCCTG
TGA
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