mRNA_11298 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174657
Unique NamemRNA_11298
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174657 vs. uniprot
Match: A0A835ZE75_9STRA (Protein tyrosine phosphatase type IVA protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE75_9STRA)

HSP 1 Score: 338 bits (868), Expect = 3.530e-117
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1 
Query:    1 MVLVHATSLATRPSLIEWANKKGRKLSFLIMDAPKAHNLQLYLKECKRHNVVSMVRVCEDTYPAEEVTRAGIDMHHMEYPDGDAPPQEIINQWLDVVDVTGXXXXXXXXXXXXXXXPTIAVHCVAGLGRAPVLVAIALIESGMDPIHAVEYIRERRRGAINRKQLTYLERYAPTRHRRRGTCAVM 555
            MVLVHATSLATRPSLIEWANKKGRKLSFLIMDAPKAHNLQLYLKECKRHNVVSMVRVCEDTYPAEEVTRAGIDMHHMEYPDGDAPPQEIINQWLDVVDVTGXXXXXXXXXXXXXXXPTIAVHCVAGLGRAPVLVAIALIESGMDPIHAVEYIRERRRGAINRKQLTYLERYAPTRHRRRGTCAVM
Sbjct:    1 MVLVHATSLATRPSLIEWANKKGRKLSFLIMDAPKAHNLQLYLKECKRHNVVSMVRVCEDTYPAEEVTRAGIDMHHMEYPDGDAPPQEIINQWLDVVDVTGXXXXXXXXXXXXXXXPTIAVHCVAGLGRAPVLVAIALIESGMDPIHAVEYIRERRRGAINRKQLTYLERYAPTRHRRRGTCAVM 185
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BLAST of jgi.p|Trimin1|174657 vs. uniprot
Match: A0A835YN25_9STRA (Protein tyrosine phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN25_9STRA)

HSP 1 Score: 236 bits (601), Expect = 2.690e-76
Identity = 129/187 (68.98%), Postives = 142/187 (75.94%), Query Frame = 1 
Query:    1 MVLVHATSLATRPSLIEWANKKGRKLSFLIMDAPKAHNLQLYLKECKRHNVVSMVRVCEDTYPAEEVTRAGIDMHHMEYPDGDAPPQEIINQWLDVVDVT----------GXXXXXXXXXXXXXXXPTIAVHCVAGLGRAPVLVAIALIESGMDPIHAVEYIRERRRGAINRKQLTYLERYAPTRHR 531
            M L   +SLAT+PSL+EW N+KGRKLSFLIMDAPKAHNL +YLKECK+HNVV MVRVCE TYPA+EV RAGI M  MEY DG APP EII  WLDVVD T                XXXXXX    PT+AVHCVAGLGRAPVLVAIALIE+GM+   AVEYIR RRRGAINRKQL+YLE+Y   RH+
Sbjct:    1 MALAQVSSLATKPSLVEWVNRKGRKLSFLIMDAPKAHNLPIYLKECKKHNVVRMVRVCEKTYPADEVERAGIAMSEMEYDDGMAPPPEIIRSWLDVVDATFRSGGPSANDSMHAGGXXXXXXEGGTPTVAVHCVAGLGRAPVLVAIALIENGMESSEAVEYIRARRRGAINRKQLSYLEQYQRIRHK 187
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BLAST of jgi.p|Trimin1|174657 vs. uniprot
Match: D7FKQ1_ECTSI (Protein tyrosine phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKQ1_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 1.010e-60
Identity = 105/166 (63.25%), Postives = 121/166 (72.89%), Query Frame = 1 
Query:   16 ATSLATRPSLIEWANKKGRKLSFLIMDAPKAHNLQLYLKECKRHNVVSMVRVCEDTYPAEEVTRAGIDMHHMEYPDGDAPPQEIINQWLDVVDVTGXXXXXXXXXXXXXXXPTIAVHCVAGLGRAPVLVAIALIESGMDPIHAVEYIRERRRGAINRKQLTYLERY 513
            A +++  PSL+EW     +KL F+IMDAPKA+NL LY++E K+ NVV +VRVCE TYPA EV  AGI +  MEY DG APP EIIN+WLDVV  T                PTIAVHCVAGLGRAPVLVAIALIE G DPI AVEYIR+RRRGAINRKQL+YL+ Y
Sbjct:   32 AATMSAHPSLVEW-----KKLRFVIMDAPKANNLHLYIRELKKQNVVCVVRVCEPTYPASEVEAAGIKLLEMEYDDGGAPPVEIINKWLDVVQTT-FHNAPDSSGPNGSEGPTIAVHCVAGLGRAPVLVAIALIEYGKDPIKAVEYIRDRRRGAINRKQLSYLDSY 191
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BLAST of jgi.p|Trimin1|174657 vs. uniprot
Match: A0A6H5KJ35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ35_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 3.320e-59
Identity = 103/166 (62.05%), Postives = 121/166 (72.89%), Query Frame = 1 
Query:   16 ATSLATRPSLIEWANKKGRKLSFLIMDAPKAHNLQLYLKECKRHNVVSMVRVCEDTYPAEEVTRAGIDMHHMEYPDGDAPPQEIINQWLDVVDVTGXXXXXXXXXXXXXXXPTIAVHCVAGLGRAPVLVAIALIESGMDPIHAVEYIRERRRGAINRKQLTYLERY 513
            A +++  PSL+EW     +KL F+IMDAPKA+NL LY++E K+ NVV +VRVCE TYPA EV  AG+ +  MEY DG APP EIIN+WL+VV  T                PTIAVHCVAGLGRAPVLVAIALIE G DPI AVEYIR+RRRGAINRKQL+YL+ Y
Sbjct:   43 AATMSAHPSLVEW-----KKLRFVIMDAPKANNLHLYIRELKKQNVVCVVRVCEPTYPASEVEAAGMKLLEMEYDDGGAPPVEIINKWLNVVKTT-FHNAPDSSGPNGSEGPTIAVHCVAGLGRAPVLVAIALIEYGKDPIKAVEYIRDRRRGAINRKQLSYLDSY 202
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BLAST of jgi.p|Trimin1|174657 vs. uniprot
Match: A0A7S3GSY3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GSY3_9STRA)

HSP 1 Score: 177 bits (450), Expect = 9.080e-54
Identity = 98/180 (54.44%), Postives = 116/180 (64.44%), Query Frame = 1 
Query:   16 ATSLATRPSLIEWANKKGRKLSFLIMDAPKAHNLQLYLKECKRHNVVSMVRVCEDTYPAEEVTRAGIDMHHMEYPDGDAPPQEIINQWLDVVDVTGXXXXXXXXXXXXXXXPTIAVHCVAGLGRAPVLVAIALIESGMDPIHAVEYIRERRRGAINRKQLTYLERYAPTRHRRRGTCAVM 555
            A SL  +PSLIEW       L  LIMDAPK  NL LYLK+CK+ NV S+VR+ E +Y  EEV ++GI +H M YPDG +PP ++I +WL V+  T                P IA+HCVAGLGRAPVLVAIALIE GMD I AV +IRERRRGAIN  QL YLE Y P R +    C +M
Sbjct:    4 ANSLVNKPSLIEWG-----PLRLLIMDAPKDSNLHLYLKQCKKSNVTSIVRISEPSYSREEVEKSGIALHEMYYPDGHSPPPDVIARWLTVLADT-------FDNKGPDETPCIAIHCVAGLGRAPVLVAIALIEYGMDAISAVTFIRERRRGAINTVQLNYLESYKPMRKKGDKKCTIM 171
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BLAST of jgi.p|Trimin1|174657 vs. uniprot
Match: A0A7R9Y7Z4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y7Z4_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.660e-53
Identity = 101/185 (54.59%), Postives = 123/185 (66.49%), Query Frame = 1 
Query:    4 VLVHATSLATRPSLIEWANKKGRKLSFLIMDAPKAHNLQLYLKECKRHNVVSMVRVCEDTYPAEEVTRAGIDMHHMEYPDGDAPPQEIINQWLDVVDVTGXXXXXXXXXXXXXXXPTIAVHCVAGLGRAPVLVAIALIE-SGMDPIHAVEYIRERRRGAINRKQLTYLERYAPTRHRRRGTCAVM 555
            V ++  SLA RPSL+E  + +     FLI+DAPK H+L  YL ECK++NVV +VRVC+ TY AE V  AGI MH MEY DG  PPQE+I++WLDVV+ T                P IAVHCVAGLGRAPVLVAIALIE + ++P  AV  IR++RRGAIN KQL YLE Y  TR     +C +M
Sbjct:    8 VELNTVSLAGRPSLVEVDDMR-----FLILDAPKEHDLPQYLLECKKNNVVHLVRVCQPTYNAEHVESAGIHMHEMEYADGSHPPQEVIDKWLDVVEQT----FSAKAVAKADEKPCIAVHCVAGLGRAPVLVAIALIEFAALEPTEAVTLIRKQRRGAINSKQLQYLESYVATRAGGACSCVIM 183
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BLAST of jgi.p|Trimin1|174657 vs. uniprot
Match: A0A8K1FCX2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCX2_PYTOL)

HSP 1 Score: 174 bits (441), Expect = 1.980e-52
Identity = 93/174 (53.45%), Postives = 120/174 (68.97%), Query Frame = 1 
Query:   34 RPSLIEWANKKGRKLSFLIMDAPKAHNLQLYLKECKRHNVVSMVRVCEDTYPAEEVTRAGIDMHHMEYPDGDAPPQEIINQWLDVVDVTGXXXXXXXXXXXXXXXPTIAVHCVAGLGRAPVLVAIALIESGMDPIHAVEYIRERRRGAINRKQLTYLERYAPTRHRRRGTCAVM 555
            +P+L++W      +LSF+IMDAP   NL LYLKE K++NV  +VR CE TY  E V  AGI +H ME+PDG+ P  EI+++WLD+V  T                 +IAVHCVAGLGRAPVLVAIALIE G+DPI+AVE+IR+ RRGAIN +QL YLE+Y P+R  +   C++M
Sbjct:    7 KPTLVQW-----EELSFVIMDAPNNSNLHLYLKELKKYNVTELVRACEVTYGREGVEAAGIRVHEMEFPDGEPPDAEILDKWLDLVSET-----FKDNKAGSRSNKSIAVHCVAGLGRAPVLVAIALIEHGLDPINAVEHIRKHRRGAINLRQLKYLEKYEPSRGHK-SKCSIM 169
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BLAST of jgi.p|Trimin1|174657 vs. uniprot
Match: H3GU63_PHYRM (Uncharacterized protein n=24 Tax=Peronosporaceae TaxID=4777 RepID=H3GU63_PHYRM)

HSP 1 Score: 174 bits (440), Expect = 2.800e-52
Identity = 91/174 (52.30%), Postives = 120/174 (68.97%), Query Frame = 1 
Query:   34 RPSLIEWANKKGRKLSFLIMDAPKAHNLQLYLKECKRHNVVSMVRVCEDTYPAEEVTRAGIDMHHMEYPDGDAPPQEIINQWLDVVDVTGXXXXXXXXXXXXXXXPTIAVHCVAGLGRAPVLVAIALIESGMDPIHAVEYIRERRRGAINRKQLTYLERYAPTRHRRRGTCAVM 555
            +P++++W +     LSF+IMDAP   NL +YLKE K+HNV  +VR CE TY +E V  AGI +H +E+PDG++P  EI++QWLD+V+                   +IAVHCVAGLGRAPVLVAIALIE G+DPI+AVE+IR+ RRGAIN +QL YLE+Y P R  +   C +M
Sbjct:    7 KPTMVKWEH-----LSFVIMDAPNDSNLHIYLKELKKHNVTDLVRACEVTYSSESVEAAGIHVHELEFPDGESPDPEILDQWLDLVE-----ECFKDNSIDAKNNKSIAVHCVAGLGRAPVLVAIALIEYGLDPINAVEHIRKFRRGAINLRQLKYLEKYQPRRGNK-AKCVIM 169
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BLAST of jgi.p|Trimin1|174657 vs. uniprot
Match: A0A7S2XV81_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV81_9STRA)

HSP 1 Score: 173 bits (438), Expect = 4.380e-52
Identity = 93/159 (58.49%), Postives = 104/159 (65.41%), Query Frame = 1 
Query:   46 IEWANKKGRKLSFLIMDAPKAHNLQLYLKECKRHNVVSMVRVCEDTYPAEEVTRAGIDMHHMEYPDGDAPPQEIINQWLDVVDVTGXXXXXXXXXXXXXXXPTIAVHCVAGLGRAPVLVAIALIESGMDPIHAVEYIRERRRGAINRKQLTYLERYAPT 522
            +EW       L FLIMD P+ HNL LY+KE K +NV  +VRVCE  Y A EV +AGI MH ME+ DGD+PP  II  WL +VD T                P IAVHCVAGLGRAPVLVAIA IE G DP+H V+YIR RRRGAIN KQL YLE YA T
Sbjct:    1 VEWG-----PLRFLIMDTPREHNLHLYIKEMKNNNVTDVVRVCEKAYSAAEVEKAGIRMHEMEFDDGDSPPGGIITDWLHLVDET-----FKGVKEGNPSSPAIAVHCVAGLGRAPVLVAIACIERGADPLHIVKYIRNRRRGAINAKQLMYLENYAAT 149
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BLAST of jgi.p|Trimin1|174657 vs. uniprot
Match: A0A485KIA3_9STRA (Aste57867_5759 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KIA3_9STRA)

HSP 1 Score: 173 bits (439), Expect = 4.510e-52
Identity = 94/174 (54.02%), Postives = 118/174 (67.82%), Query Frame = 1 
Query:   34 RPSLIEWANKKGRKLSFLIMDAPKAHNLQLYLKECKRHNVVSMVRVCEDTYPAEEVTRAGIDMHHMEYPDGDAPPQEIINQWLDVVDVTGXXXXXXXXXXXXXXXPTIAVHCVAGLGRAPVLVAIALIESGMDPIHAVEYIRERRRGAINRKQLTYLERYAPTRHRRRGTCAVM 555
            +PS +++      +LSFLI+DAP   NL LY+KE K++ V  +VR CE TY    V  AG  +H ME+PDGD P  EIINQWLD+V+ T                 TIAVHCVAGLGRAPVLVAIALIE+G+D I+AVE+IR+ RRGAIN +QL YLE+Y PTR + +G C +M
Sbjct:    7 KPSHVQY-----EQLSFLILDAPNDTNLPLYVKEFKKYQVTDIVRACESTYSCTSVESAGFRLHEMEFPDGDPPSAEIINQWLDLVETT-FKDNSKVNAGNNPNDKTIAVHCVAGLGRAPVLVAIALIENGLDVINAVEHIRQSRRGAINLRQLKYLEKYQPTR-KDKGKCTIM 173
[Close]
BLAST of jgi.p|Trimin1|174657 vs. uniprot
Match: A0A836CND2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND2_9STRA)

HSP 1 Score: 174 bits (441), Expect = 3.420e-50
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 
Query:    1 MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGLARLRTFICWQTGLATLSASEHCLRGLAALTDLSWGTREPADAVSVPRSIGAFRALTKLSITCSRLV 447
            MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGLARLRTFICWQTGLATLSASEHCLRGLAALTDLSWGTREPADAVSVPRSIGAFRALTKLSITCSRLV
Sbjct:    1 MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGLARLRTFICWQTGLATLSASEHCLRGLAALTDLSWGTREPADAVSVPRSIGAFRALTKLSITCSRLV 149
[Close]
BLAST of jgi.p|Trimin1|174657 vs. uniprot
Match: A0A835ZG33_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG33_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.460e-37
Identity = 134/147 (91.16%), Postives = 136/147 (92.52%), Query Frame = 1 
Query:    1 MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGLARLRTFICWQTGLATLSASEHCLRGLAALTDLSWGTREPADAVSVPRSIGAFRALTKLSITCSR 441
            MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   ARLRT ICWQTG+ATLS SEHCL GLAALTDLSWGT E ADAV VPRSIGA +ALTKL ITCSR
Sbjct:    1 MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLRTSICWQTGIATLSDSEHCLGGLAALTDLSWGTHELADAVRVPRSIGALQALTKLHITCSR 147
[Close]
BLAST of jgi.p|Trimin1|174657 vs. uniprot
Match: A0A836CKM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKM6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.800e-7
Identity = 100/149 (67.11%), Postives = 111/149 (74.50%), Query Frame = 1 
Query:    1 MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGLARLRTFICWQTGLATLSASEHCLRGLAALTDLSWGTR-EPADAVSVPRSIGAFRALTKLSITCSRL 444
            + LLPESIGNL ALETL L  W+A+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          C  T +ATLS  E C+ GLA+L+  SWG + E A A+ VPR IG  +ALT LS+  SRL
Sbjct:   28 LSLLPESIGNLAALETLGLSEWKAIARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLRCCNTRVATLS--EQCIGGLASLSKFSWGGKPENAAAIQVPRGIGKLQALTALSLHSSRL 174
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174657 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZE75_9STRA3.530e-117100.00Protein tyrosine phosphatase type IVA protein 1 n=... [more]
A0A835YN25_9STRA2.690e-7668.98Protein tyrosine phosphatase n=1 Tax=Tribonema min... [more]
D7FKQ1_ECTSI1.010e-6063.25Protein tyrosine phosphatase n=1 Tax=Ectocarpus si... [more]
A0A6H5KJ35_9PHAE3.320e-5962.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3GSY3_9STRA9.080e-5454.44Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7R9Y7Z4_9STRA2.660e-5354.59Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8K1FCX2_PYTOL1.980e-5253.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GU63_PHYRM2.800e-5252.30Uncharacterized protein n=24 Tax=Peronosporaceae T... [more]
A0A7S2XV81_9STRA4.380e-5258.49Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A485KIA3_9STRA4.510e-5254.02Aste57867_5759 protein n=1 Tax=Aphanomyces stellat... [more]

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BLAST of jgi.p|Trimin1|174657 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CND2_9STRA3.420e-50100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZG33_9STRA2.460e-3791.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CKM6_9STRA4.800e-767.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_116contigContig_116:327578..328763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174657|e_gw1.116.50.1
BRITEko00000,ko01000,ko01009
KEGG koko:K18041
EC3.1.3.48
Descriptionprotein tyrosine phosphatase activity
COG categoryT
Max annot lvl4776|Peronosporales
EggNOG OGsKOG2836@1|root,KOG2836@2759|Eukaryota,3QAQB@4776|Peronosporales
Evalue3.24e-53
Seed ortholog4787.PITG_05251T0
Hectar predicted targeting categoryother localisation
TranscriptId174979
TrackFilteredModels1
ProteinId174657
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174657gene_11298Tribonema minus UTEX_B_3156 geneContig_116 327578..328763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174657Trimin1|174657|e_gw1.116.50.1Tribonema minus UTEX_B_3156 polypeptideContig_116 327578..328763 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11298_3exon_11298_3Tribonema minus UTEX_B_3156 exonContig_116 327578..327836 -
exon_11298_2exon_11298_2Tribonema minus UTEX_B_3156 exonContig_116 327918..328066 -
exon_11298_1exon_11298_1Tribonema minus UTEX_B_3156 exonContig_116 328614..328763 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11298CDS_11298Tribonema minus UTEX_B_3156 CDSContig_116 328614..328763 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11298 ID=mRNA_11298|Name=jgi.p|Trimin1|174657|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=558bp|location=Sequence derived from alignment at Contig_116:327578..328763- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCTGGTGCACGCGACGTCGCTGGCGACGCGGCCGTCGCTCATCGA
GTGGGCCAACAAGAAGGGGCGCAAGCTCAGCTTCCTCATCATGGACGCGC
CCAAGGCGCACAACCTGCAGCTCTACCTCAAGGAGTGCAAGCGCCACAAC
GTGGTGAGCATGGTGCGCGTGTGCGAGGACACGTACCCCGCGGAGGAGGT
CACACGCGCGGGCATAGACATGCACCACATGGAGTACCCCGACGGCGACG
CCCCGCCGCAGGAGATCATCAACCAGTGGCTCGATGTCGTCGACGTCACC
GGCGGCGGCGGCAGCAGCGGCGGCGGCGCGGAGGGGGGCGGGGGGGGGCC
GACGATCGCCGTGCACTGCGTGGCGGGGCTCGGGCGCGCGCCCGTGCTCG
TCGCGATCGCGCTCATCGAGAGCGGCATGGACCCGATCCACGCCGTCGAG
TACATCCGCGAGCGGCGCCGCGGCGCCATCAACCGCAAGCAGCTCACGTA
CCTCGAGCGCTACGCGCCGACGCGCCACCGGCGGCGCGGCACGTGCGCCG
TCATGTGA
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protein sequence of jgi.p|Trimin1|174657

>Trimin1|174657|e_gw1.116.50.1 ID=Trimin1|174657|e_gw1.116.50.1|Name=jgi.p|Trimin1|174657|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=186bp
MVLVHATSLATRPSLIEWANKKGRKLSFLIMDAPKAHNLQLYLKECKRHN
VVSMVRVCEDTYPAEEVTRAGIDMHHMEYPDGDAPPQEIINQWLDVVDVT
GGGGSSGGGAEGGGGGPTIAVHCVAGLGRAPVLVAIALIESGMDPIHAVE
YIRERRRGAINRKQLTYLERYAPTRHRRRGTCAVM*
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mRNA from alignment at Contig_116:327578..328763-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11298 ID=mRNA_11298|Name=jgi.p|Trimin1|174657|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1186bp|location=Sequence derived from alignment at Contig_116:327578..328763- (Tribonema minus UTEX_B_3156 )
ATGGTCCTGGTGCACGCGACGTCGCTGGCGACGCGGCCGTCGCTCATCGA
GTGGGCCAACAAGAAGGGGCGCAAGCTCAGCTTCCTCATCATGGACGCGC
CCAAGGCGCACAACCTGCAGCTCTACCTCAAGGAGTGCAAGCGCCACAAC
GTGAGAGGCCCAAACTTCAACAATCCCAAACTTCAACAGAAGACGCTTGC
CGCACTCTGTTCGTCGCTTGTGTCGCTGGCATGCCGCAAGGCGCTGCGGT
CGCGTGATGGAGGCACCGTGAACTTGTGGTTTGCTGGCCGTGCGCACTGC
TTTCGCGGCTGCAATTCTGCAGGCCTATTCAGTATACTCTGCATCAACGA
TTATGCGTCACATGTGGTGGGCAGAGATCATCTTCACGGTGTTTGGTTAT
CTCTGCAAGTATGGTTTGAAAGACCGACATGGCAAGTCAATGGCTTAATG
TGAGCACCCCCCCCCCCTTCGCACCGCACAGCTGTCCTGGCCGAAGCATG
AGCACAGGTCTCCTTTGAAATCTTCTTGGGGCGCACGTTGCAATGACCAC
GGTGCACACACGCGTCAAGTTCCCCAGCGAAAGGAATCCATCAAATCTCA
TTCCAGATCAAAGCCGATGCCATGCCATCATAATCAACCAAGGACACCGC
AGACCCCTCTCCATGCTCACCCCCCCCCCTCCCCGCTGCGCGGCCAGGTG
GTGAGCATGGTGCGCGTGTGCGAGGACACGTACCCCGCGGAGGAGGTCAC
ACGCGCGGGCATAGACATGCACCACATGGAGTACCCCGACGGCGACGCCC
CGCCGCAGGAGATCATCAACCAGTGGCTCGATGTCGTCGACGTCACGTTC
CGCGGCGGCGGCGGCGCTGCTGCGCCGGCCCAGGGAACCAGCGGCGGCGG
CGGCGGCGGCGGCAGCGGCGGCGGCAGCGGCGGCGGCGGCAGCAGCGGCG
GCGGCGCGGAGGGGGGCGGGGGGGGGCCGACGATCGCCGTGCACTGCGTG
GCGGGGCTCGGGCGCGCGCCCGTGCTCGTCGCGATCGCGCTCATCGAGAG
CGGCATGGACCCGATCCACGCCGTCGAGTACATCCGCGAGCGGCGCCGCG
GCGCCATCAACCGCAAGCAGCTCACGTACCTCGAGCGCTACGCGCCGACG
CGCCACCGGCGGCGCGGCACGTGCGCCGTCATGTGA
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Coding sequence (CDS) from alignment at Contig_116:327578..328763-

>mRNA_11298 ID=mRNA_11298|Name=jgi.p|Trimin1|174657|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=558bp|location=Sequence derived from alignment at Contig_116:327578..328763- (Tribonema minus UTEX_B_3156 )
ATGGTCCTGGTGCACGCGACGTCGCTGGCGACGCGGCCGTCGCTCATCGA
GTGGGCCAACAAGAAGGGGCGCAAGCTCAGCTTCCTCATCATGGACGCGC
CCAAGGCGCACAACCTGCAGCTCTACCTCAAGGAGTGCAAGCGCCACAAC
GTGGTGAGCATGGTGCGCGTGTGCGAGGACACGTACCCCGCGGAGGAGGT
CACACGCGCGGGCATAGACATGCACCACATGGAGTACCCCGACGGCGACG
CCCCGCCGCAGGAGATCATCAACCAGTGGCTCGATGTCGTCGACGTCACC
GGCGGCGGCGGCAGCAGCGGCGGCGGCGCGGAGGGGGGCGGGGGGGGGCC
GACGATCGCCGTGCACTGCGTGGCGGGGCTCGGGCGCGCGCCCGTGCTCG
TCGCGATCGCGCTCATCGAGAGCGGCATGGACCCGATCCACGCCGTCGAG
TACATCCGCGAGCGGCGCCGCGGCGCCATCAACCGCAAGCAGCTCACGTA
CCTCGAGCGCTACGCGCCGACGCGCCACCGGCGGCGCGGCACGTGCGCCG
TCATGTGA
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