mRNA_1126 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|156465 vs. uniprot
Match: A0A835ZLB1_9STRA (RAD51A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLB1_9STRA) HSP 1 Score: 326 bits (836), Expect = 8.580e-113 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1
Query: 1 IERLVKAGVSAADIQQLQKAGIATVGILFRVTTKILRDIRGFNKAKVATILQAASKVDSKAGVTFQSGIEARNGRMKIMKISTGSDALNSIFGGGVETGSITEIHGEFGMGKTQMMHTLAVTAQLRMQNGSGGGRVIFMDTDNTFTPERIKTIADRFDVDGHEVRHVTEP 510
IERLVKAGVSAADIQQLQKAGIATVGILFRVTTKILRDIRGFNKAKVATILQAASKVDSKAGVTFQSGIEARNGRMKIMKISTGSDALNSIFGGGVETGSITEIHGEFGMGKTQMMHTLAVTAQLRMQNGSGGGRVIFMDTDNTFTPERIKTIADRFDVDGHEVRHVTEP
Sbjct: 1 IERLVKAGVSAADIQQLQKAGIATVGILFRVTTKILRDIRGFNKAKVATILQAASKVDSKAGVTFQSGIEARNGRMKIMKISTGSDALNSIFGGGVETGSITEIHGEFGMGKTQMMHTLAVTAQLRMQNGSGGGRVIFMDTDNTFTPERIKTIADRFDVDGHEVRHVTEP 170
BLAST of jgi.p|Trimin1|156465 vs. uniprot
Match: A0A835YPZ9_9STRA (DMC1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPZ9_9STRA) HSP 1 Score: 204 bits (520), Expect = 2.470e-62 Identity = 103/164 (62.80%), Postives = 132/164 (80.49%), Query Frame = 1
Query: 1 IERLVKAGVSAADIQQLQKAGIATVGILFRVTTKILRDIRGFNKAKVATILQAASKVDSKAGVTFQSGIEARNGRMKIMKISTGSDALNSIFGGGVETGSITEIHGEFGMGKTQMMHTLAVTAQLRMQNGSGGGRVIFMDTDNTFTPERIKTIADRFDVDGHEV 492
IE+L K ++AADIQ+L++ GIATVG+LF+ K L DIRGF++ KVA IL+ A KVD +AG+ F+SGIEAR+ R ++KI+TGS L+ I GGGVETGSITE +GEF GKTQMMHTLAVTAQL +Q+G G GRV+F+DT+N F PERI+ IA+RF +DG+EV
Sbjct: 31 IEQLAKHAINAADIQKLKEQGIATVGMLFQCPLKTLHDIRGFSETKVAKILETARKVDPRAGIIFRSGIEARDERRNVIKITTGSAGLDGILGGGVETGSITEFYGEFRTGKTQMMHTLAVTAQLDIQSGGGAGRVVFIDTENNFRPERIENIAERFGIDGNEV 194
BLAST of jgi.p|Trimin1|156465 vs. uniprot
Match: A0A1J4KIK7_9EUKA (Meiotic recombination protein DMC1 like protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KIK7_9EUKA) HSP 1 Score: 158 bits (400), Expect = 1.900e-44 Identity = 82/164 (50.00%), Postives = 118/164 (71.95%), Query Frame = 1
Query: 1 IERLVKAGVSAADIQQLQKAGIATVGILFRVTTKILRDIRGFNKAKVATILQAASKVDSKAGVTFQSGIEARNGRMKIMKISTGSDALNSIFGGGVETGSITEIHGEFGMGKTQMMHTLAVTAQLRMQNGSGGGRVIFMDTDNTFTPERIKTIADRFDVDGHEV 492
IE+LV+AG++AADI++L++AGI TVG + T K L +++G + AKV I+ AA+ +D+ +F SG E N R +++ I+TGS L+ + GGG+E+ SITE+ GEF GKTQ+ HTL VT+QL + G G G+V+++DT+ TF PERI TIA RF VD +EV
Sbjct: 23 IEKLVQAGINAADIKKLKEAGICTVGAVLMETKKRLANVKGISDAKVDKIIAAATSLDT--SFSFMSGNECLNRRQRVIHITTGSSELDKLLGGGIESMSITEVFGEFRTGKTQLCHTLCVTSQLPINQGGGAGKVVYIDTEGTFRPERIPTIAARFGVDPNEV 184
BLAST of jgi.p|Trimin1|156465 vs. uniprot
Match: D7FY86_ECTSI (Meiotic recombination protein DMC1/LIM15 homolog, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY86_ECTSI) HSP 1 Score: 154 bits (390), Expect = 6.730e-44 Identity = 80/164 (48.78%), Postives = 113/164 (68.90%), Query Frame = 1
Query: 1 IERLVKAGVSAADIQQLQKAGIATVGILFRVTTKILRDIRGFNKAKVATILQAASKVD-SKAGVTFQSGIEARNGRMKIMKISTGSDALNSIFGGGVETGSITEIHGEFGMGKTQMMHTLAVTAQLRMQNGSGGGRVIFMDTDNTFTPERIKTIADRFDVDGHE 489
+E L AG+ A+I +L++A +ATVG + TK L IRGF+ A VA I AA+KVD S + F++G++ R R K++K+ TGS L+++ GGG+ETGSITE GEF GKTQ+ HTL VT+QL ++G GRV++MDT+ F PER++ IA+RF +D E
Sbjct: 32 VEELTNAGIKMAEINKLKEANLATVGAVLATPTKRLLTIRGFSDATVAKIQLAAAKVDTSGSSGMFKTGLQCRQAREKVIKVHTGSKQLDALLGGGIETGSITEFFGEFRSGKTQLCHTLCVTSQLSKESGGAEGRVVYMDTEGNFRPERVEAIAERFGLDPTE 195
BLAST of jgi.p|Trimin1|156465 vs. uniprot
Match: A2FY08_TRIVA (Meiotic recombination protein DMC1/LIM15 homolog, putative n=2 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2FY08_TRIVA) HSP 1 Score: 149 bits (375), Expect = 1.060e-40 Identity = 79/163 (48.47%), Postives = 112/163 (68.71%), Query Frame = 1
Query: 1 IERLVKAGVSAADIQQLQKAGIATVGILFRVTTKILRDIRGFNKAKVATILQAASKVDSKAGVTFQSGIEARNGRMKIMKISTGSDALNSIFGGGVETGSITEIHGEFGMGKTQMMHTLAVTAQLRMQNGSGGGRVIFMDTDNTFTPERIKTIADRFDVDGHE 489
IE+L +AG++ ADI++L++AGI TVG + T K L +++G + AKV ++ AA ++S++ TF SG R K+++I++GS L+ + GGGVE+ SITE+ GEF GKTQ+ HTL VTAQL + G G+V F+DT+ TF PERI IA RF VDG E
Sbjct: 24 IEKLQQAGINIADIKKLKEAGICTVGAVLMETKKHLANVKGISDAKVDKLIAAAQSLESES-FTFISGATCLKNRSKVIRITSGSTELDKLLGGGVESMSITEVFGEFRTGKTQLCHTLCVTAQLPLSQSGGQGKVCFIDTEGTFRPERIPVIAQRFGVDGDE 185
BLAST of jgi.p|Trimin1|156465 vs. uniprot
Match: R7QC09_CHOCR (RECA_2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QC09_CHOCR) HSP 1 Score: 149 bits (375), Expect = 1.210e-40 Identity = 81/164 (49.39%), Postives = 108/164 (65.85%), Query Frame = 1
Query: 1 IERLVKAGVSAADIQQLQKAGIATVGILFRVTTKILRDIRGFNKAKVATILQAASKVDSKAGVTFQSGIEARNGRMKIMKISTGSDALNSIFGGGVETGSITEIHGEFGMGKTQMMHTLAVTAQLRMQNGSGGGRVIFMDTDNTFTPERIKTIADRFDVDGHEV 492
I++L + V+AADI++++ AG TV + T K L +++G ++ K+ I AA K+ G F +G EAR RM + +STGS ALN I GGG+ETGSITE GEF GKTQ+ HTL VTAQL + G G GRV F+DT+NTF PERI I RFD++ +V
Sbjct: 25 IDKLAELAVAAADIKKMKDAGYYTVSSVLMRTKKALCEVKGLSEPKIDKIRDAALKL---FGAGFITGTEARQKRMNVYNVSTGSQALNEIIGGGIETGSITEAFGEFRCGKTQLSHTLCVTAQLPTEMGGGNGRVAFIDTENTFRPERIMEICARFDLNADDV 185
BLAST of jgi.p|Trimin1|156465 vs. uniprot
Match: A0A2T7PYH8_POMCA (RECA_2 domain-containing protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PYH8_POMCA) HSP 1 Score: 145 bits (366), Expect = 5.810e-40 Identity = 76/164 (46.34%), Postives = 114/164 (69.51%), Query Frame = 1
Query: 1 IERLVKAGVSAADIQQLQKAGIATVGILFRVTTKILRDIRGFNKAKVATILQAASKVDSKAGVTFQSGIEARNGRMKIMKISTGSDALNSIFGGGVETGSITEIHGEFGMGKTQMMHTLAVTAQLRMQNGSGGGRVIFMDTDNTFTPERIKTIADRFDVDGHEV 492
I++L G++ ADI++L++AGI T+ + T K L +I+G ++AK+ I +AASK+ A FQ+ +E + R ++ KISTGS LN + GGG+E+ +ITE+ GEF GKTQ+ HTL VT QL G GG+V+F+DT+NTF P+R++ IADRF++D + V
Sbjct: 24 IDQLQNHGINVADIKKLKQAGICTIKGIHMTTRKKLCNIKGISEAKMEKIKEAASKLCDTA---FQTALEYADKRKQVFKISTGSTELNKLLGGGIESMAITEVFGEFRTGKTQLSHTLCVTTQLPTNQGYSGGKVVFIDTENTFRPDRLRNIADRFNLDQNAV 184
BLAST of jgi.p|Trimin1|156465 vs. uniprot
Match: A0A2V3IPH3_9FLOR (Meiotic recombination protein DMC1-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPH3_9FLOR) HSP 1 Score: 146 bits (369), Expect = 7.700e-40 Identity = 80/164 (48.78%), Postives = 108/164 (65.85%), Query Frame = 1
Query: 1 IERLVKAGVSAADIQQLQKAGIATVGILFRVTTKILRDIRGFNKAKVATILQAASKVDSKAGVTFQSGIEARNGRMKIMKISTGSDALNSIFGGGVETGSITEIHGEFGMGKTQMMHTLAVTAQLRMQNGSGGGRVIFMDTDNTFTPERIKTIADRFDVDGHEV 492
I++L + ++AADI++++ AG TV + T K L +++G ++ K+ I AA K+ G F +G EAR RM + ISTGS ALN I GGG+E+GSITE GEF GKTQ+ HTL VTAQL + G G GRV F+DT+NTF PERI I RFD++ +V
Sbjct: 23 IDKLSELAIAAADIKKMKDAGYYTVSSVLMRTKKALCEVKGLSEPKIDKIRDAALKL---VGAGFITGTEARQKRMNVYNISTGSQALNEIIGGGIESGSITEAFGEFRCGKTQLSHTLCVTAQLPHEMGGGNGRVAFIDTENTFRPERIIEICARFDLNAEDV 183
BLAST of jgi.p|Trimin1|156465 vs. uniprot
Match: A0A4Y2ID11_ARAVE (Meiotic recombination protein DMC1/LIM15 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2ID11_ARAVE) HSP 1 Score: 143 bits (360), Expect = 1.910e-38 Identity = 79/164 (48.17%), Postives = 110/164 (67.07%), Query Frame = 1
Query: 1 IERLVKAGVSAADIQQLQKAGIATVGILFRVTTKILRDIRGFNKAKVATILQAASKVDSKAGVTFQSGIEARNGRMKIMKISTGSDALNSIFGGGVETGSITEIHGEFGMGKTQMMHTLAVTAQLRMQNGSGGGRVIFMDTDNTFTPERIKTIADRFDVDGHEV 492
I+ L + G++ ADI++L+ +GI T+ L T K L I+G ++AKV I +AASK+ S F + +EA R + KISTGSD LN + GGG+E+ +ITE GEF GKTQ+ HTL VT QL NG GG+ +F+DT+NTF P+R+K+IADRF++D V
Sbjct: 25 IDLLQEHGINVADIKKLKTSGICTIRGLQMTTKKKLGAIKGLSEAKVDKIKEAASKLSSNV---FLTALEASRKRKLVFKISTGSDDLNKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTCQLPGANGYAGGKAMFIDTENTFRPDRLKSIADRFNLDHEAV 185
BLAST of jgi.p|Trimin1|156465 vs. uniprot
Match: A0A8C7ZJ53_9TELE (Meiotic recombination protein n=1 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C7ZJ53_9TELE) HSP 1 Score: 141 bits (356), Expect = 3.740e-38 Identity = 79/160 (49.38%), Postives = 108/160 (67.50%), Query Frame = 1
Query: 1 IERLVKAGVSAADIQQLQKAGIATVGILFRVTTKILRDIRGFNKAKVATILQAASKVDSKAGVTFQSGIEARNGRMKIMKISTGSDALNSIFGGGVETGSITEIHGEFGMGKTQMMHTLAVTAQLRMQNGSGGGRVIFMDTDNTFTPERIKTIADRFDVD 480
I+ L K G++ ADI++L+ GI TV + T K L +I+G ++AKV I +AA KV V FQ+ E + R ++ ISTGS + + GGGVE+ +ITE GEF GKTQ+ HTL VTAQL +NG GG+VIF+DT+NTF P+R++ IADRF+VD
Sbjct: 22 IDLLQKHGINMADIKKLKLVGICTVKGIQMTTRKALCNIKGLSEAKVEKIKEAAGKV---LNVGFQTAFEYSSKRKQVFHISTGSQEFDKLLGGGVESMAITEAFGEFRTGKTQLSHTLCVTAQLPGENGYSGGKVIFIDTENTFRPDRLRDIADRFNVD 178 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156465 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1126 ID=mRNA_1126|Name=jgi.p|Trimin1|156465|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=513bp|location=Sequence derived from alignment at Contig_1:1443062..1445011+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATCGAACGCCTCGTGAAAGCAGGCGTCAGTGCCGCAGACATTCAGCAGCTback to top protein sequence of jgi.p|Trimin1|156465 >Trimin1|156465|e_gw1.1.420.1 ID=Trimin1|156465|e_gw1.1.420.1|Name=jgi.p|Trimin1|156465|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=171bp IERLVKAGVSAADIQQLQKAGIATVGILFRVTTKILRDIRGFNKAKVATIback to top mRNA from alignment at Contig_1:1443062..1445011+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1126 ID=mRNA_1126|Name=jgi.p|Trimin1|156465|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1950bp|location=Sequence derived from alignment at Contig_1:1443062..1445011+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_1:1443062..1445011+ >mRNA_1126 ID=mRNA_1126|Name=jgi.p|Trimin1|156465|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=513bp|location=Sequence derived from alignment at Contig_1:1443062..1445011+ (Tribonema minus UTEX_B_3156 )back to top |