mRNA_11159 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129265
Unique NamemRNA_11159
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|129265 vs. uniprot
Match: A0A835YPA6_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPA6_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.870e-35
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 QYRLKGVVAHVGTADSGHYYSFIRVANGSWLEFNDRVVTPFNEALIPKECFGGPD 165
            QYRLKGVVAHVGTADSGHYYSFIRVANGSWLEFNDRVVTPFNEALIPKECFGGPD
Sbjct:    1 QYRLKGVVAHVGTADSGHYYSFIRVANGSWLEFNDRVVTPFNEALIPKECFGGPD 55
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BLAST of jgi.p|Trimin1|129265 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.250e-18
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 QYRLKGVVAHVGTADSGHYYSFIRVANGSWLEFNDRVVTPFNEALIPKECFGG 159
            +YRLKG+VAH GTAD GHYYS IR +   WLEFNDR VTP++ A IP++CFGG
Sbjct: 2149 EYRLKGIVAHQGTADHGHYYSLIRASGDRWLEFNDRRVTPYDPANIPRDCFGG 2201
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BLAST of jgi.p|Trimin1|129265 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 3.080e-18
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 QYRLKGVVAHVGTADSGHYYSFIRVANGSWLEFNDRVVTPFNEALIPKECFGG 159
            +YRLKG+VAH GTAD GHYYS IR     WLEFNDR VTP++ A IP++CFGG
Sbjct: 3126 EYRLKGIVAHQGTADHGHYYSLIRAGGDRWLEFNDRRVTPYDPANIPRDCFGG 3178
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BLAST of jgi.p|Trimin1|129265 vs. uniprot
Match: A0A7S3HCD8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCD8_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.020e-17
Identity = 37/60 (61.67%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 QYRLKGVVAHVGTADSGHYYSFIR-----VANGSWLEFNDRVVTPFNEALIPKECFGGPD 165
            QY LKG+VAHVG  D GHYYSFIR      A G W EFNDR V PF+   IP ECFGG +
Sbjct:   36 QYALKGIVAHVGAIDRGHYYSFIRNPDGEAAGGVWQEFNDRNVLPFSPEAIPLECFGGKE 95
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BLAST of jgi.p|Trimin1|129265 vs. uniprot
Match: A0A1R2CRI8_9CILI (USP domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CRI8_9CILI)

HSP 1 Score: 79.7 bits (195), Expect = 4.520e-16
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 QYRLKGVVAHVGTADSGHYYSFIRVANGSWLEFNDRVVTPFNEALIPKECFGGPD 165
            QYRL+G++ HVGTADSGHYYSFIR  N  W EFND +V PF+ + IP E FGG +
Sbjct: 1594 QYRLRGIIIHVGTADSGHYYSFIREQN-QWFEFNDTLVRPFDPSDIPNEAFGGEE 1647
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BLAST of jgi.p|Trimin1|129265 vs. uniprot
Match: A0A1V9YEU6_9STRA (Ubiquitin-specific protease n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YEU6_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.150e-15
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    4 YRLKGVVAHVGTADSGHYYSFIRVANGSWLEFNDRVVTPFNEALIPKECFGGPD 165
            Y L G + HVGTA SGHYYSF+R   G W EFND VV PF+ A +P ECFG P+
Sbjct: 1860 YELTGTIVHVGTAQSGHYYSFLRDPAGWWFEFNDTVVEPFDPARLPTECFGKPE 1913
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BLAST of jgi.p|Trimin1|129265 vs. uniprot
Match: A0A1R2BCS9_9CILI (USP domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BCS9_9CILI)

HSP 1 Score: 77.4 bits (189), Expect = 2.930e-15
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 QYRLKGVVAHVGTADSGHYYSFIRVANGSWLEFNDRVVTPFNEALIPKECFGGPD 165
            QYRL+G++ HVGTADSGHYYSFIR  N  W EFND +V P + + IP E FGG +
Sbjct: 1567 QYRLRGIIIHVGTADSGHYYSFIREQN-QWFEFNDTLVRPLDPSDIPNEAFGGEE 1620
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BLAST of jgi.p|Trimin1|129265 vs. uniprot
Match: A0A3M6VKK4_9STRA (USP domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKK4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.480e-15
Identity = 35/60 (58.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 QYRLKGVVAHVGTADSGHYYSFIR-----VANGSWLEFNDRVVTPFNEALIPKECFGGPD 165
            QY L G V H+GTA SGHYYSF+R     +    W EFND +VTPFN A IP ECFGG +
Sbjct: 2278 QYELVGTVVHLGTAHSGHYYSFLRDQEMPLDKNQWYEFNDTLVTPFNPAHIPDECFGGEE 2337
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BLAST of jgi.p|Trimin1|129265 vs. uniprot
Match: A0A5D6XY90_9STRA (USP domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XY90_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.480e-15
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    1 QYRLKGVVAHVGTADSGHYYSFIRV------ANGSWLEFNDRVVTPFNEALIPKECFGGPD 165
            QY L G V H+GTA+SGHYYSF+R       A+  W EFND +VTPF+   IP ECFGG D
Sbjct: 2305 QYELVGTVVHMGTANSGHYYSFLREQDTADSASRHWFEFNDTIVTPFDPQQIPDECFGGED 2365
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BLAST of jgi.p|Trimin1|129265 vs. uniprot
Match: K3WT18_GLOUD (USP domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WT18_GLOUD)

HSP 1 Score: 76.3 bits (186), Expect = 7.480e-15
Identity = 35/60 (58.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 QYRLKGVVAHVGTADSGHYYSFIRVANGS-----WLEFNDRVVTPFNEALIPKECFGGPD 165
            QY L G V H+GTA+SGHYYSF+R  NG      W EFND VV+ FN   IP ECFGG +
Sbjct: 1994 QYELVGTVVHMGTANSGHYYSFLREQNGGNDYNQWYEFNDTVVSAFNPQQIPDECFGGEE 2053
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129265 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YPA6_9STRA1.870e-35100.00USP domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A6H5KTV6_9PHAE2.250e-1867.92USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LU88_ECTSI3.080e-1867.92Ubiquitin domain-containing protein (Partial) (Fra... [more]
A0A7S3HCD8_9STRA2.020e-1761.67Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A1R2CRI8_9CILI4.520e-1663.64USP domain-containing protein n=1 Tax=Stentor coer... [more]
A0A1V9YEU6_9STRA1.150e-1561.11Ubiquitin-specific protease n=1 Tax=Achlya hypogyn... [more]
A0A1R2BCS9_9CILI2.930e-1561.82USP domain-containing protein n=1 Tax=Stentor coer... [more]
A0A3M6VKK4_9STRA5.480e-1558.33USP domain-containing protein n=2 Tax=Peronospora ... [more]
A0A5D6XY90_9STRA5.480e-1557.38USP domain-containing protein n=1 Tax=Pythium bras... [more]
K3WT18_GLOUD7.480e-1558.33USP domain-containing protein n=1 Tax=Globisporang... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_59contigContig_59:746122..746286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129265|gw1.59.3.1
BRITEko00000,ko01000,ko01002,ko04121
KEGG koko:K11840,ko:K11869
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5077@1|root,KOG1866@2759|Eukaryota
Evalue5.05e-19
Seed ortholog2880.D8LU88
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId129587
TrackFilteredModels1
ProteinId129265
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129265gene_11159Tribonema minus UTEX_B_3156 geneContig_59 746122..746286 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11159_1exon_11159_1Tribonema minus UTEX_B_3156 exonContig_59 746122..746286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11159CDS_11159Tribonema minus UTEX_B_3156 CDSContig_59 746122..746286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129265Trimin1|129265|gw1.59.3.1Tribonema minus UTEX_B_3156 polypeptideContig_59 746122..746286 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11159 ID=mRNA_11159|Name=jgi.p|Trimin1|129265|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=165bp|location=Sequence derived from alignment at Contig_59:746122..746286+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGTATCGTCTCAAGGGCGTCGTAGCGCACGTAGGCACTGCCGACAGCGG
CCACTACTACAGCTTCATCCGAGTCGCGAACGGGTCATGGCTCGAGTTCA
ACGACCGCGTGGTCACGCCATTCAACGAGGCGCTGATACCCAAGGAGTGC
TTCGGCGGGCCCGAT
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protein sequence of jgi.p|Trimin1|129265

>Trimin1|129265|gw1.59.3.1 ID=Trimin1|129265|gw1.59.3.1|Name=jgi.p|Trimin1|129265|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=55bp
QYRLKGVVAHVGTADSGHYYSFIRVANGSWLEFNDRVVTPFNEALIPKEC
FGGPD
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mRNA from alignment at Contig_59:746122..746286+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11159 ID=mRNA_11159|Name=jgi.p|Trimin1|129265|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=165bp|location=Sequence derived from alignment at Contig_59:746122..746286+ (Tribonema minus UTEX_B_3156 )
CAGTATCGTCTCAAGGGCGTCGTAGCGCACGTAGGCACTGCCGACAGCGG
CCACTACTACAGCTTCATCCGAGTCGCGAACGGGTCATGGCTCGAGTTCA
ACGACCGCGTGGTCACGCCATTCAACGAGGCGCTGATACCCAAGGAGTGC
TTCGGCGGGCCCGAT
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Coding sequence (CDS) from alignment at Contig_59:746122..746286+

>mRNA_11159 ID=mRNA_11159|Name=jgi.p|Trimin1|129265|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=165bp|location=Sequence derived from alignment at Contig_59:746122..746286+ (Tribonema minus UTEX_B_3156 )
CAGTATCGTCTCAAGGGCGTCGTAGCGCACGTAGGCACTGCCGACAGCGG
CCACTACTACAGCTTCATCCGAGTCGCGAACGGGTCATGGCTCGAGTTCA
ACGACCGCGTGGTCACGCCATTCAACGAGGCGCTGATACCCAAGGAGTGC
TTCGGCGGGCCCGAT
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