mRNA_11158 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: A0A835YQG3_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQG3_9STRA) HSP 1 Score: 436 bits (1121), Expect = 7.350e-155 Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1
Query: 1 LNSVLQQLYHTRAFSGPLMGAAPARRPGREQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARELVKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 636
LNSVLQQLYHTRAFSGPLMGAAPARRPGREQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARELVKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM
Sbjct: 1 LNSVLQQLYHTRAFSGPLMGAAPARRPGREQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARELVKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 212
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI) HSP 1 Score: 273 bits (697), Expect = 6.280e-81 Identity = 133/220 (60.45%), Postives = 164/220 (74.55%), Query Frame = 1
Query: 1 LNSVLQQLYHTRAFSGPLMGAAPARRPG--------REQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARELVKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 636
+NS+LQQLYH + FS L+G P RR G +EQDE+L +LQVLFASL + QR+++DT+P C+ F+DYDG+P+ AEQKD EFC+ LL KLE SS A L+ FGGTL YQ++ R+ C HTS R EPF++LTAEVQ K++L +L L +GE L GDN YLCE+CG+RV AQRRCAIK LP TLIVHLKRFEF+L TM RHKLNHRC+FPM
Sbjct: 2687 MNSLLQQLYHVQDFSLQLLGLVPDRRAGGGESNHPLQEQDEVLLQLQVLFASLRISQRKFYDTKPFCAVFMDYDGQPLRHAEQKDVNEFCTHLLHKLEGSSKQAGSLIDKVFGGTLAYQVISRD--CEHTSERTEPFIVLTAEVQDKESLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPM 2904
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE) HSP 1 Score: 270 bits (689), Expect = 7.440e-80 Identity = 131/220 (59.55%), Postives = 164/220 (74.55%), Query Frame = 1
Query: 1 LNSVLQQLYHTRAFSGPLMGAAPARRPG--------REQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARELVKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 636
+NS+LQQLYH + FS L+G P RR G +E+DE+L +LQVLFA+L + QR+++DT+P C+ F+DYDG+P+ AEQKD EFC+ LL KLE SS A L+ FGGTL YQ++ R+ C HTS R EPF++LTAEVQ K++L +L L +GE L GDN YLCE+CG+RV AQRRCAIK LP TLIVHLKRFEF+L TM RHKLNHRC+FPM
Sbjct: 1704 MNSLLQQLYHVQDFSLQLLGLVPDRRAGGGESSDPLQEEDEVLLQLQVLFATLRISQRKFYDTKPFCAVFMDYDGQPLRHAEQKDVNEFCTHLLHKLEGSSKQAGSLIAKVFGGTLAYQVISRD--CEHTSERTEPFIVLTAEVQDKESLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLGTMRRHKLNHRCSFPM 1921
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: A0A7S3MAA4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAA4_9STRA) HSP 1 Score: 189 bits (479), Expect = 8.210e-56 Identity = 104/226 (46.02%), Postives = 137/226 (60.62%), Query Frame = 1
Query: 1 LNSVLQQLYHTRAFSGPLMGAAPARRPGREQD-------------ELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARELVKATFGGTLQYQIV--PREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFP 633
+NS +QQL+H AF L+ A + ++ ELLF+LQV+F ++ Q+RY+DT P C +FLDYD P+SL EQKD EF ML DK+E + +AA A T+Q +IV R + S R+E F MLTAEV+ K TL +L+LFT+ E GDNK + GR+V A R CAI+ LPPTLI+HLKRFEF+LETM R K+N +FP
Sbjct: 31 MNSFIQQLFHIPAFKTGLLRINAAAKTAKDATSNNSLEEKPDPNVELLFQLQVMFGFMNFSQKRYYDTLPFCRTFLDYDAEPISLTEQKDINEFAGMLFDKIEHNKEAA-----ALLASTIQGKIVWRTRSLETPYKSEREETFYMLTAEVKDKATLEDSLELFTADELFSGDNKIEDAEAGRKVDALRGCAIRSLPPTLIIHLKRFEFDLETMNRKKVNDHISFP 251
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: L8GPA8_ACACA (Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPA8_ACACA) HSP 1 Score: 187 bits (475), Expect = 4.200e-51 Identity = 89/214 (41.59%), Postives = 140/214 (65.42%), Query Frame = 1
Query: 1 LNSVLQQLYHTRAFSGPLMGAAPARRPGREQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARE--LVKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 636
+NS++QQ + F ++ + ++++ LL++LQ +F L +++Y+DTRP CSS+ D++G+PM++ +Q+DA EF +MLLD+LE +E L+ FGG L QI+ ++ C H S R+E F L+ +++ K ++ +L L+ G+ L+GDNK+ C +C +V A +RC +K+LP LIVHLKRFEF+LETM R KLN C FPM
Sbjct: 1407 MNSLMQQFFMIPGFRWGMLEVQDSEE--KKEESLLWQLQTIFGYLQESEKKYYDTRPFCSSYKDWEGQPMNVGQQQDADEFMNMLLDRLESILKKTQEEKLLSQFFGGALSNQIISKD--CTHVSEREENFFTLSLDIKNKKSILESLALYVEGDMLEGDNKFHCSECNAKVDALKRCCVKNLPDNLIVHLKRFEFDLETMKRIKLNDSCQFPM 1616
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: A0A482SHC7_9ARCH (USP domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHC7_9ARCH) HSP 1 Score: 183 bits (465), Expect = 9.150e-50 Identity = 97/211 (45.97%), Postives = 134/211 (63.51%), Query Frame = 1
Query: 1 LNSVLQQLYHTRAFSGPLMGAAPARRPGREQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARELVKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFP 633
+N+ +QQLYH + F+ L+ + E LL ++Q++FA L Q+R +DT P C + +DYDG+P+SL+EQKD EF ML DKLE++S AA EL+ T GT +Q E + S R+E F M+T EV+ K TL AL+L + E G+NK + ++V A RRCAI+DLPP LI+HLKRFEF+LETM R K+N +FP
Sbjct: 1823 MNAFIQQLYHAQTFTDQLLSVSTYAEEA-EYSHLLLQMQMMFAYLKYSQKRVYDTLPFCKALIDYDGQPISLSEQKDINEFAGMLFDKLEKNS-AAAELLAQTIQGTYIWQTKSLET--TYYSEREEKFYMITVEVKNKKTLLEALELTVAEELFTGENKIEDSENNKKVDAVRRCAIRDLPPVLIIHLKRFEFDLETMNRKKVNDYMSFP 2029
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: A0A6B2KX30_9EUKA (USP domain-containing protein n=2 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KX30_9EUKA) HSP 1 Score: 174 bits (442), Expect = 9.190e-47 Identity = 88/214 (41.12%), Postives = 134/214 (62.62%), Query Frame = 1
Query: 1 LNSVLQQLYHTRAFSGPLMGAAPARRPGREQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARELV--KATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 636
+NS+LQQL+ T F ++ A A + + D +L +LQ LFA L G +Y +T C + +G+P++ ++Q DA+EF + LLDKLE L+ + FGG L Q++ + GC H R+EPF ++ +++ K+ L +AL+LF GE L G+NKY+CE CG V+ +RC IKDLP L++HLKRFEF+ +T+ R K++ C+FPM
Sbjct: 1 MNSLLQQLFLTTDFRKVVLQAPNATQD--KSDSVLHQLQCLFAGLQEGITKYQETTSFCRGYK-VNGQPVNTSQQMDAWEFFNTLLDKLENELRGTNSLISMRKIFGGNLTNQLIGVQ-GCDHKREREEPFYTISVDIKQKENLESALELFVQGEMLTGENKYMCESCGEPVSTLKRCCIKDLPHMLVIHLKRFEFDYDTLDRKKVSSPCSFPM 210
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: X6N2M1_RETFI (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6N2M1_RETFI) HSP 1 Score: 173 bits (439), Expect = 1.890e-46 Identity = 91/234 (38.89%), Postives = 135/234 (57.69%), Query Frame = 1
Query: 1 LNSVLQQLY--------------HTRAFSGPLMG-----AAPARRPG-REQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAAREL--VKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 636
+NS+LQQL+ HT A + +G + R+ G +D +L+++Q+LF L + Q++++DT PLC++ YDG P+ L EQ+D EFC+ L D+LE + + ++ FGG L QI+ ++ C H S + E FL ++ V+ K L +LDL+ G+ LDGDNKY C QC ++ A RR K LP L++HL RFEF+ +MTR KLN R FPM
Sbjct: 477 MNSLLQQLFINEDFRRDILEARLHTSAMAEENLGNEEKESLELRKHGILPKDSVLYQMQLLFGYLMISQKKFYDTMPLCTTLKGYDGNPLPLGEQQDVNEFCNRLFDELEHDLNKTDRMDAIRENFGGYLVSQIISKDDTCDHRSEQVERFLTVSLTVKNKANLRESLDLYVQGDLLDGDNKYFCSQCNTKILALRRVCFKTLPKCLLLHLSRFEFDFNSMTRLKLNSRFEFPM 710
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: A0A0D2WMI0_CAPO3 (Ubiquitinyl hydrolase 1 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WMI0_CAPO3) HSP 1 Score: 173 bits (439), Expect = 2.890e-46 Identity = 91/213 (42.72%), Postives = 131/213 (61.50%), Query Frame = 1
Query: 1 LNSVLQQLYHTRAFSGPLMGAAPARRPGREQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLE-RSSDAARELV-KATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFP 633
+NS++QQ + +F ++ A A D +L++LQ +F++L ++R DTRP +F DYDG+PM++A Q D EF + L D+LE R + E + K TFGG L QI+ ++ C H S+R E L EV+ K ++ +L L+ GE LDGDNKY C C R V A++R + LP TLIVHLKRFEF++ET+ R+K+N C FP
Sbjct: 1833 MNSIMQQFFMIPSFRRNVL-AIDASAETDPADSMLYQLQCIFSNLQESEKRTFDTRPFTLTFKDYDGQPMNVAMQMDVDEFFTTLFDRLETRLKGSPHETIFKQTFGGQLIQQIISQD--CEHVSSRVEDCFALQCEVKNKKSILESLALYVEGEMLDGDNKYFCATCSRHVTAKKRACVFSLPQTLIVHLKRFEFDMETLRRYKINDYCEFP 2042
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: A0A7S1CQN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQN3_9STRA) HSP 1 Score: 167 bits (424), Expect = 8.150e-46 Identity = 92/213 (43.19%), Postives = 128/213 (60.09%), Query Frame = 1
Query: 4 NSVLQQLYHTRAFSGPLMGAA-PARRPGREQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARE--LVKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFP 633
NSVLQQL+ T F ++ A PA+ P ++ +LF+LQ LF L +R+ D RP ++F D DG P ++ Q+DA EF S+LLD++E + + + TF G + +I + C H S EPF +L+ + +L AL T+GE L GDN Y C CG +V A +R I++LPPTLIVHLKRFEF+ ETM + KLN RC+FP
Sbjct: 157 NSVLQQLFMTPRFRRAVLDAVDPAKDP---RESVLFQLQSLFGWLQESERKCKDPRPFFAAFKDLDGNPTNVRVQQDADEFLSLLLDRIETAVKGLPQEAAITRTFAGKVVNKITGEK--CGHVSDNQEPFQVLSVAINGHASLEEALSAHTAGEPLRGDNAYACGTCGHKVDAIKRLCIRELPPTLIVHLKRFEFDYETMLKRKLNSRCSFP 364 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11158 ID=mRNA_11158|Name=jgi.p|Trimin1|168669|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=639bp|location=Sequence derived from alignment at Contig_59:740429..744039+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTCAACTCGGTGCTGCAGCAGCTGTACCACACGCGCGCGTTCTCGGGGCCback to top protein sequence of jgi.p|Trimin1|168669 >Trimin1|168669|e_gw1.59.12.1 ID=Trimin1|168669|e_gw1.59.12.1|Name=jgi.p|Trimin1|168669|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=213bp LNSVLQQLYHTRAFSGPLMGAAPARRPGREQDELLFKLQVLFASLHVGQRback to top mRNA from alignment at Contig_59:740429..744039+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11158 ID=mRNA_11158|Name=jgi.p|Trimin1|168669|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3611bp|location=Sequence derived from alignment at Contig_59:740429..744039+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_59:740429..744039+ >mRNA_11158 ID=mRNA_11158|Name=jgi.p|Trimin1|168669|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=639bp|location=Sequence derived from alignment at Contig_59:740429..744039+ (Tribonema minus UTEX_B_3156 )back to top |