mRNA_11120 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: A0A836CAM1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAM1_9STRA) HSP 1 Score: 219 bits (557), Expect = 2.460e-72 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 Query: 1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH Sbjct: 1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 106
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: A0A835ZAW6_9STRA (WD repeat membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAW6_9STRA) HSP 1 Score: 174 bits (442), Expect = 1.740e-48 Identity = 89/106 (83.96%), Postives = 92/106 (86.79%), Query Frame = 1 Query: 1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318 QDLGN R+ HAVLY IRRLEDQRARVP AL RP LLLHSYTLAK +ARRGEHEGAA MLLRVA S RFPAHTV+VLTSCVIECQRAGLRESAFEYASV MR EH Sbjct: 1268 QDLGNYREAHAVLYEAIRRLEDQRARVPQALRRPFLLLHSYTLAKRLARRGEHEGAARMLLRVARSASRFPAHTVAVLTSCVIECQRAGLRESAFEYASVLMRPEH 1373
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: A0A835Z0P1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0P1_9STRA) HSP 1 Score: 141 bits (355), Expect = 9.310e-37 Identity = 78/113 (69.03%), Postives = 82/113 (72.57%), Query Frame = 1 Query: 1 QDLGNCRKTHAVL-------YPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318 QD GN RK HAVL IRRLEDQR RVP AL RP LL HSY L K +ARRGEH+GAA MLLRVA S RF HT++VLTSCVIECQRAGLRESAFEY SV R EH Sbjct: 1363 QDFGNYRKAHAVLREATMVQLEAIRRLEDQRVRVPQALRRPFLLRHSYMLTKRLARRGEHDGAARMLLRVARSASRFLTHTIAVLTSCVIECQRAGLRESAFEYPSV--RPEH 1473
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: A0A6H5KE11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE11_9PHAE) HSP 1 Score: 134 bits (338), Expect = 1.790e-34 Identity = 68/106 (64.15%), Postives = 78/106 (73.58%), Query Frame = 1 Query: 1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318 QDLGN + H +L+ IR+LEDQ VP AL R +LLHSY L K + RRG+HEGAA MLLRVA S+ RFP H V VLTS VIECQR+GLR SAFEYAS MR E+ Sbjct: 596 QDLGNYKVAHGILFETIRQLEDQGIHVPQALRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISRFPTHIVPVLTSTVIECQRSGLRNSAFEYASTLMRQEY 701
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: D7FIK0_ECTSI (WD repeat membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK0_ECTSI) HSP 1 Score: 133 bits (335), Expect = 4.640e-34 Identity = 67/106 (63.21%), Postives = 78/106 (73.58%), Query Frame = 1 Query: 1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318 QDLGN + H +L+ IR+LEDQ VP +L R +LLHSY L K + RRG+HEGAA MLLRVA S+ RFP H V VLTS VIECQR+GLR SAFEYAS MR E+ Sbjct: 1217 QDLGNYKVAHGILFETIRQLEDQGIHVPQSLRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISRFPTHIVPVLTSTVIECQRSGLRNSAFEYASTLMRQEY 1322
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: R1C5Q5_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C5Q5_EMIHU) HSP 1 Score: 120 bits (301), Expect = 1.780e-29 Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = 1 Query: 1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318 Q++GN R H +L+ R L QR RVP L L+LLHSY L K +++ G+H AA +L RVA S+ RFPAH V +LTSCVIEC RAGLRESAFE+A+ MR E+ Sbjct: 1121 QEVGNYRVAHQILFDTHRELSSQRIRVPQELANSLMLLHSYVLVKPLSKSGDHMTAARLLCRVARSISRFPAHVVPILTSCVIECHRAGLRESAFEFATTLMRPEY 1226
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: A0A835Z7Z7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z7_9STRA) HSP 1 Score: 119 bits (298), Expect = 4.640e-29 Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 46 VIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRA 264 VIRRLED+RARVP AL RP LLLHS+TLAK +ARRGEH+GAA MLLRVA S+ RFPAHTV+VLTSCVIECQRA Sbjct: 559 VIRRLEDKRARVPQALRRPFLLLHSFTLAKRLARRGEHKGAARMLLRVARSVSRFPAHTVAVLTSCVIECQRA 631
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: A0A061RBR3_9CHLO (Wd repeat-containing protein 19 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RBR3_9CHLO) HSP 1 Score: 118 bits (296), Expect = 5.680e-29 Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = 1 Query: 1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318 Q++GN + H+ L+ R L Q+ R+P+ L R L+LLHSY L K +AR G+HE AA ML+RVA ++ +FP H V +LTS VIECQRAG R++AFEYAS+ +R E+ Sbjct: 330 QEMGNYKLAHSQLFETFRELRSQKRRIPAELTRSLMLLHSYILVKTLARIGDHESAARMLIRVARNISKFPEHIVPILTSTVIECQRAGFRKTAFEYASMLVRPEY 435
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: A0A061RSU0_9CHLO (Wd repeat-containing protein 19 n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RSU0_9CHLO) HSP 1 Score: 118 bits (296), Expect = 8.290e-29 Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = 1 Query: 1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318 Q++GN + H+ L+ R L Q+ R+P+ L R L+LLHSY L K +AR G+HE AA ML+RVA ++ +FP H V +LTS VIECQRAG R++AFEYAS+ +R E+ Sbjct: 692 QEMGNYKLAHSQLFETFRELRSQKRRIPAELTRSLMLLHSYILVKTLARIGDHESAARMLIRVARNISKFPEHIVPILTSTVIECQRAGFRKTAFEYASMLVRPEY 797
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: A0A812W5W2_SYMMI (WDR19 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W5W2_SYMMI) HSP 1 Score: 117 bits (294), Expect = 1.330e-28 Identity = 57/106 (53.77%), Postives = 75/106 (70.75%), Query Frame = 1 Query: 1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318 QD+GN H V+ IR+LED RVPS L +LLHSY + K + +RG+H GAA MLLRVA S+ +FP H V +LTS V+ECQRAGL+ S++EYA++ MR E+ Sbjct: 498 QDMGNYSLAHGVVTETIRKLEDDGIRVPSQLRSHFVLLHSYLIVKRLVKRGDHTGAARMLLRVAESVSKFPQHLVPILTSTVVECQRAGLKASSYEYAAMLMRPEY 603 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11120 ID=mRNA_11120|Name=jgi.p|Trimin1|137309|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_59:334812..335129- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGGACCTTGGCAACTGCCGCAAGACGCATGCCGTCCTCTACCCAGTGATback to top protein sequence of jgi.p|Trimin1|137309 >Trimin1|137309|gw1.59.39.1 ID=Trimin1|137309|gw1.59.39.1|Name=jgi.p|Trimin1|137309|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=106bp QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRback to top mRNA from alignment at Contig_59:334812..335129- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11120 ID=mRNA_11120|Name=jgi.p|Trimin1|137309|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_59:334812..335129- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_59:334812..335129- >mRNA_11120 ID=mRNA_11120|Name=jgi.p|Trimin1|137309|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=318bp|location=Sequence derived from alignment at Contig_59:334812..335129- (Tribonema minus UTEX_B_3156 )back to top |