mRNA_11120 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137309
Unique NamemRNA_11120
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: A0A836CAM1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAM1_9STRA)

HSP 1 Score: 219 bits (557), Expect = 2.460e-72
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1
Query:    1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318
            QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH
Sbjct:    1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 106          
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: A0A835ZAW6_9STRA (WD repeat membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAW6_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.740e-48
Identity = 89/106 (83.96%), Postives = 92/106 (86.79%), Query Frame = 1
Query:    1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318
            QDLGN R+ HAVLY  IRRLEDQRARVP AL RP LLLHSYTLAK +ARRGEHEGAA MLLRVA S  RFPAHTV+VLTSCVIECQRAGLRESAFEYASV MR EH
Sbjct: 1268 QDLGNYREAHAVLYEAIRRLEDQRARVPQALRRPFLLLHSYTLAKRLARRGEHEGAARMLLRVARSASRFPAHTVAVLTSCVIECQRAGLRESAFEYASVLMRPEH 1373          
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: A0A835Z0P1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0P1_9STRA)

HSP 1 Score: 141 bits (355), Expect = 9.310e-37
Identity = 78/113 (69.03%), Postives = 82/113 (72.57%), Query Frame = 1
Query:    1 QDLGNCRKTHAVL-------YPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318
            QD GN RK HAVL          IRRLEDQR RVP AL RP LL HSY L K +ARRGEH+GAA MLLRVA S  RF  HT++VLTSCVIECQRAGLRESAFEY SV  R EH
Sbjct: 1363 QDFGNYRKAHAVLREATMVQLEAIRRLEDQRVRVPQALRRPFLLRHSYMLTKRLARRGEHDGAARMLLRVARSASRFLTHTIAVLTSCVIECQRAGLRESAFEYPSV--RPEH 1473          
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: A0A6H5KE11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE11_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.790e-34
Identity = 68/106 (64.15%), Postives = 78/106 (73.58%), Query Frame = 1
Query:    1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318
            QDLGN +  H +L+  IR+LEDQ   VP AL R  +LLHSY L K + RRG+HEGAA MLLRVA S+ RFP H V VLTS VIECQR+GLR SAFEYAS  MR E+
Sbjct:  596 QDLGNYKVAHGILFETIRQLEDQGIHVPQALRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISRFPTHIVPVLTSTVIECQRSGLRNSAFEYASTLMRQEY 701          
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: D7FIK0_ECTSI (WD repeat membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK0_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 4.640e-34
Identity = 67/106 (63.21%), Postives = 78/106 (73.58%), Query Frame = 1
Query:    1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318
            QDLGN +  H +L+  IR+LEDQ   VP +L R  +LLHSY L K + RRG+HEGAA MLLRVA S+ RFP H V VLTS VIECQR+GLR SAFEYAS  MR E+
Sbjct: 1217 QDLGNYKVAHGILFETIRQLEDQGIHVPQSLRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISRFPTHIVPVLTSTVIECQRSGLRNSAFEYASTLMRQEY 1322          
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: R1C5Q5_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C5Q5_EMIHU)

HSP 1 Score: 120 bits (301), Expect = 1.780e-29
Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = 1
Query:    1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318
            Q++GN R  H +L+   R L  QR RVP  L   L+LLHSY L K +++ G+H  AA +L RVA S+ RFPAH V +LTSCVIEC RAGLRESAFE+A+  MR E+
Sbjct: 1121 QEVGNYRVAHQILFDTHRELSSQRIRVPQELANSLMLLHSYVLVKPLSKSGDHMTAARLLCRVARSISRFPAHVVPILTSCVIECHRAGLRESAFEFATTLMRPEY 1226          
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: A0A835Z7Z7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z7_9STRA)

HSP 1 Score: 119 bits (298), Expect = 4.640e-29
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 1
Query:   46 VIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRA 264
            VIRRLED+RARVP AL RP LLLHS+TLAK +ARRGEH+GAA MLLRVA S+ RFPAHTV+VLTSCVIECQRA
Sbjct:  559 VIRRLEDKRARVPQALRRPFLLLHSFTLAKRLARRGEHKGAARMLLRVARSVSRFPAHTVAVLTSCVIECQRA 631          
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: A0A061RBR3_9CHLO (Wd repeat-containing protein 19 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RBR3_9CHLO)

HSP 1 Score: 118 bits (296), Expect = 5.680e-29
Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = 1
Query:    1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318
            Q++GN +  H+ L+   R L  Q+ R+P+ L R L+LLHSY L K +AR G+HE AA ML+RVA ++ +FP H V +LTS VIECQRAG R++AFEYAS+ +R E+
Sbjct:  330 QEMGNYKLAHSQLFETFRELRSQKRRIPAELTRSLMLLHSYILVKTLARIGDHESAARMLIRVARNISKFPEHIVPILTSTVIECQRAGFRKTAFEYASMLVRPEY 435          
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: A0A061RSU0_9CHLO (Wd repeat-containing protein 19 n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RSU0_9CHLO)

HSP 1 Score: 118 bits (296), Expect = 8.290e-29
Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = 1
Query:    1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318
            Q++GN +  H+ L+   R L  Q+ R+P+ L R L+LLHSY L K +AR G+HE AA ML+RVA ++ +FP H V +LTS VIECQRAG R++AFEYAS+ +R E+
Sbjct:  692 QEMGNYKLAHSQLFETFRELRSQKRRIPAELTRSLMLLHSYILVKTLARIGDHESAARMLIRVARNISKFPEHIVPILTSTVIECQRAGFRKTAFEYASMLVRPEY 797          
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Match: A0A812W5W2_SYMMI (WDR19 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W5W2_SYMMI)

HSP 1 Score: 117 bits (294), Expect = 1.330e-28
Identity = 57/106 (53.77%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    1 QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARRGEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASVFMRTEH 318
            QD+GN    H V+   IR+LED   RVPS L    +LLHSY + K + +RG+H GAA MLLRVA S+ +FP H V +LTS V+ECQRAGL+ S++EYA++ MR E+
Sbjct:  498 QDMGNYSLAHGVVTETIRKLEDDGIRVPSQLRSHFVLLHSYLIVKRLVKRGDHTGAARMLLRVAESVSKFPQHLVPILTSTVVECQRAGLKASSYEYAAMLMRPEY 603          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137309 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CAM1_9STRA2.460e-72100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZAW6_9STRA1.740e-4883.96WD repeat membrane protein n=1 Tax=Tribonema minus... [more]
A0A835Z0P1_9STRA9.310e-3769.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KE11_9PHAE1.790e-3464.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIK0_ECTSI4.640e-3463.21WD repeat membrane protein n=1 Tax=Ectocarpus sili... [more]
R1C5Q5_EMIHU1.780e-2955.66Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A835Z7Z7_9STRA4.640e-2982.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A061RBR3_9CHLO5.680e-2952.83Wd repeat-containing protein 19 n=1 Tax=Tetraselmi... [more]
A0A061RSU0_9CHLO8.290e-2952.83Wd repeat-containing protein 19 n=2 Tax=Tetraselmi... [more]
A0A812W5W2_SYMMI1.330e-2853.77WDR19 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_59contigContig_59:334812..335129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137309|gw1.59.39.1
BRITEko00000,ko03036
KEGG koko:K19671
Preferred nameFAP66
Descriptionmyotome development
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2247@1|root,KOG2247@2759|Eukaryota
Evalue7.61e-35
Seed ortholog2880.D7FIK0
Hectar predicted targeting categoryother localisation
TranscriptId137631
TrackFilteredModels1
ProteinId137309
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137309gene_11120Tribonema minus UTEX_B_3156 geneContig_59 334812..335129 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11120_1exon_11120_1Tribonema minus UTEX_B_3156 exonContig_59 334812..335129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11120CDS_11120Tribonema minus UTEX_B_3156 CDSContig_59 334812..335129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137309Trimin1|137309|gw1.59.39.1Tribonema minus UTEX_B_3156 polypeptideContig_59 334812..335129 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11120 ID=mRNA_11120|Name=jgi.p|Trimin1|137309|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_59:334812..335129- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGACCTTGGCAACTGCCGCAAGACGCATGCCGTCCTCTACCCAGTGAT
CCGGCGCCTGGAGGATCAGCGCGCGCGTGTGCCGTCGGCGCTGTGGCGCC
CGTTGCTGCTGTTGCACTCGTACACGCTCGCCAAGCACATTGCGCGGCGC
GGCGAGCACGAGGGCGCGGCGTGCATGCTGCTGCGCGTCGCATGCTCCAT
GTTACGCTTCCCAGCGCACACGGTCAGCGTGCTCACGAGCTGCGTCATTG
AGTGCCAGCGCGCGGGCCTGCGTGAGAGCGCGTTCGAGTATGCAAGCGTG
TTCATGCGGACGGAGCAC
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protein sequence of jgi.p|Trimin1|137309

>Trimin1|137309|gw1.59.39.1 ID=Trimin1|137309|gw1.59.39.1|Name=jgi.p|Trimin1|137309|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=106bp
QDLGNCRKTHAVLYPVIRRLEDQRARVPSALWRPLLLLHSYTLAKHIARR
GEHEGAACMLLRVACSMLRFPAHTVSVLTSCVIECQRAGLRESAFEYASV
FMRTEH
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mRNA from alignment at Contig_59:334812..335129-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11120 ID=mRNA_11120|Name=jgi.p|Trimin1|137309|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_59:334812..335129- (Tribonema minus UTEX_B_3156 )
CAGGACCTTGGCAACTGCCGCAAGACGCATGCCGTCCTCTACCCAGTGAT CCGGCGCCTGGAGGATCAGCGCGCGCGTGTGCCGTCGGCGCTGTGGCGCC CGTTGCTGCTGTTGCACTCGTACACGCTCGCCAAGCACATTGCGCGGCGC GGCGAGCACGAGGGCGCGGCGTGCATGCTGCTGCGCGTCGCATGCTCCAT GTTACGCTTCCCAGCGCACACGGTCAGCGTGCTCACGAGCTGCGTCATTG AGTGCCAGCGCGCGGGCCTGCGTGAGAGCGCGTTCGAGTATGCAAGCGTG TTCATGCGGACGGAGCAC
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Coding sequence (CDS) from alignment at Contig_59:334812..335129-

>mRNA_11120 ID=mRNA_11120|Name=jgi.p|Trimin1|137309|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=318bp|location=Sequence derived from alignment at Contig_59:334812..335129- (Tribonema minus UTEX_B_3156 )
CAGGACCTTGGCAACTGCCGCAAGACGCATGCCGTCCTCTACCCAGTGAT
CCGGCGCCTGGAGGATCAGCGCGCGCGTGTGCCGTCGGCGCTGTGGCGCC
CGTTGCTGCTGTTGCACTCGTACACGCTCGCCAAGCACATTGCGCGGCGC
GGCGAGCACGAGGGCGCGGCGTGCATGCTGCTGCGCGTCGCATGCTCCAT
GTTACGCTTCCCAGCGCACACGGTCAGCGTGCTCACGAGCTGCGTCATTG
AGTGCCAGCGCGCGGGCCTGCGTGAGAGCGCGTTCGAGTATGCAAGCGTG
TTCATGCGGACGGAGCAC
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