mRNA_11033 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|337271 vs. uniprot
Match: A0A835YI62_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI62_9STRA) HSP 1 Score: 927 bits (2397), Expect = 0.000e+0 Identity = 477/477 (100.00%), Postives = 477/477 (100.00%), Query Frame = 1 Query: 1 MVKEAEEAYGFVCARVEAMTRQLVKGEALTALGCCTHAKLRSRLCRVFAGRGCGAVWTAIQLSAVGGRFRGLEPLVAGLAAARDRWAEAAVNGNKAAAKQPKSCEARSAALKALGDRTILSHVLQFASRRSWVFIAGVSSHWRGVYMATCALHFGLAHLLRTAWREAFSSVDMFIAAADAGALDKKEQPALCHQLGRWGTRALLACATGVEFNVSLDGSMLVGAAKSGCPDWFMHLGRLLVKRRLVTLKAAVKAAVAAARCGDNAXXXXXXXXDGSMLGWITSLKLAGMPEWIVAGMAAVAAWRGHLHTLWWVNEHKDDWGVANAVMDCYDLPRKSLEEGASYGCFQRDETAEHFAYYDIIDMAVRAGHWHIVQYVVSEQVACPSGAAIALAVQLRRVDMAKVLLDSLEDIEYERFDDVMPALARERSCPVKFFLLIRARSTFTWSPEFLSEVLTMAEEVQNATLAAWLLSIGAVRP 1431 MVKEAEEAYGFVCARVEAMTRQLVKGEALTALGCCTHAKLRSRLCRVFAGRGCGAVWTAIQLSAVGGRFRGLEPLVAGLAAARDRWAEAAVNGNKAAAKQPKSCEARSAALKALGDRTILSHVLQFASRRSWVFIAGVSSHWRGVYMATCALHFGLAHLLRTAWREAFSSVDMFIAAADAGALDKKEQPALCHQLGRWGTRALLACATGVEFNVSLDGSMLVGAAKSGCPDWFMHLGRLLVKRRLVTLKAAVKAAVAAARCGDNAXXXXXXXXDGSMLGWITSLKLAGMPEWIVAGMAAVAAWRGHLHTLWWVNEHKDDWGVANAVMDCYDLPRKSLEEGASYGCFQRDETAEHFAYYDIIDMAVRAGHWHIVQYVVSEQVACPSGAAIALAVQLRRVDMAKVLLDSLEDIEYERFDDVMPALARERSCPVKFFLLIRARSTFTWSPEFLSEVLTMAEEVQNATLAAWLLSIGAVRP Sbjct: 1 MVKEAEEAYGFVCARVEAMTRQLVKGEALTALGCCTHAKLRSRLCRVFAGRGCGAVWTAIQLSAVGGRFRGLEPLVAGLAAARDRWAEAAVNGNKAAAKQPKSCEARSAALKALGDRTILSHVLQFASRRSWVFIAGVSSHWRGVYMATCALHFGLAHLLRTAWREAFSSVDMFIAAADAGALDKKEQPALCHQLGRWGTRALLACATGVEFNVSLDGSMLVGAAKSGCPDWFMHLGRLLVKRRLVTLKAAVKAAVAAARCGDNAXXXXXXXXDGSMLGWITSLKLAGMPEWIVAGMAAVAAWRGHLHTLWWVNEHKDDWGVANAVMDCYDLPRKSLEEGASYGCFQRDETAEHFAYYDIIDMAVRAGHWHIVQYVVSEQVACPSGAAIALAVQLRRVDMAKVLLDSLEDIEYERFDDVMPALARERSCPVKFFLLIRARSTFTWSPEFLSEVLTMAEEVQNATLAAWLLSIGAVRP 477
BLAST of jgi.p|Trimin1|337271 vs. uniprot
Match: A0A835ZG12_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG12_9STRA) HSP 1 Score: 427 bits (1097), Expect = 8.060e-142 Identity = 252/476 (52.94%), Postives = 316/476 (66.39%), Query Frame = 1 Query: 16 EEAYGFVCARVEAMTRQLVKGEALTALGCCTHAKLRSRLCRVFAGRGCGAVWTAIQLSAVGGRFRGLEPLVAGLAAARDRWAEAAVNGNKAAAKQPKSCEARSAALKALGDRTILSHVLQFASRRSWVFIAGVSSHWRGVYMATCALHFGLAHLLRTAWREAFSSVDMFIAAADAGALDKKEQPALCHQLGRWGTRALLACATGVEFNVSLDGSMLVGAAKSGCPDWFMHLGRLLVKRRLVTLKAAVKAAVAAARCGDNAXXXXXXXXDGSMLGWITSLKLAGMPEWIVAGMAAVAAWRGHLHTLWWVNEHKDD-WG--VANAVMDCY--DLPRKSLEEGASYGCFQRDE-TAEHFAYYDII-DMAVRAGHWHIVQYVVSEQVACPSGAAIALAVQLRRVDMAKVLLDSLEDIEYERFDDVMPALARERSCPVKFFLLIRARSTFTWSPEFLSEVLTMAEEVQNATLAAWLLSIGA 1422 E AYG+VC+R EA+ RQL KG A A+L G A +LSAVGGRFRGLEP++A LAAARD AE A + + C A+ ALGDR IL H+LQF +RSWV+IAGVS HWRG YMATCA+ FGLAHL RT+WRE +SV+ F+AAADAGAL++ QPAL HQLGRWG+RAL+ACATG F+V L G +LVGAA++G DWF++LG+LLVKR + ++ A+KAAVAAAR GD+ G ++ WI SLKLAG+P WIVAG+AAVAA GHL TL W+ H DD WG + V++ Y +LP++S+EEGA+YGCF+ D T + Y I+ + A+R+GH HIV Y+ +E +ALAVQ+ RVDMA+ LL + + + +DV+PALARE SCPV F RA ST W E LS +L A EVQNA LAAWL SIGA Sbjct: 91 EAAYGYVCSRAEAIMRQLAKGGPALASPS-ADAELY------------GLHAIATRLSAVGGRFRGLEPILARLAAARDCRAEPAAD-------RTDLCVAQGTPHAALGDRVILGHILQFTGKRSWVYIAGVSPHWRGAYMATCAMQFGLAHLCRTSWREVLTSVETFVAAADAGALEETHQPALQHQLGRWGSRALVACATGAGFDVPLHGPILVGAAETGRADWFVYLGQLLVKRGRLGIEDAIKAAVAAARRGDS----------GEVMAWIASLKLAGVPRWIVAGLAAVAARHGHLATLRWMITHADDCWGFKLGLGVIEAYFDNLPQRSVEEGAAYGCFEPDVMTPDGDGEYHILTETAIRSGHMHIVDYIAAELHEYVIDDTVALAVQIGRVDMAQALLTTWDAAAEDLVEDVLPALAREPSCPVALFEFARAYSTAVWPAEDLSAMLPAANEVQNAPLAAWLRSIGA 536
BLAST of jgi.p|Trimin1|337271 vs. uniprot
Match: A0A836C7E5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7E5_9STRA) HSP 1 Score: 420 bits (1079), Expect = 3.100e-140 Identity = 245/473 (51.80%), Postives = 306/473 (64.69%), Query Frame = 1 Query: 16 EEAYGFVCARVEAMTRQLVKGEALTALGCCTHAKLRSRLCRVFAGRGCGAVWTAIQLSAVGGRFRGLEPLVAGLAAARDRWAEAAVNGNKAAAKQPKSCEARSAALKALGDRTILSHVLQFASRRSWVFIAGVSSHWRGVYMATCALHFGLAHLLRTAWREAFSSVDMFIAAADAGALDKKEQPALCHQLGRWGTRALLACATGVEFNVSLDGSMLVGAAKSGCPDWFMHLGRLLVKRRLVTLKAAVKAAVAAARCGDNAXXXXXXXXDGSMLGWITSLKLAGMPEWIVAGMAAVAAWRGHLHTLWWVNEHKDDWG--VANAVMDCYDLPRKSLEEGASYGCFQRDETAEHFA-YYDIIDMAVRAGHWHIVQYVVSEQVACPSGAAIALAVQLRRVDMAKVLLDSLEDIEYERFDDVMPALARERSCPVKFFLLIRARSTFTWSP-EFLSEVLTMAEEVQNATLAAWLLSIGA 1422 +EAY +VCARVEAM RQL KG A+L G A QLSA+GGRF GLEP++AGLAAAR AE A AK+ KSC+A+SAA ALGDR IL H+LQF S RSW+FIAG+S HWRG YMATCA H G+A L RTAWREA SVD F AAADAG L K+ Q AL QLG+WGTR LLACA+G F+V+L+GSMLV AA+SG PDWF+HLGRLLV R +++ K A+ AAV AARCGD G MLGW+ SL + MP+W+V G+A AA GHLHTL WV H DWG V + D + + ++EG +GCF++ ++ F YY+++D AVRAGH HIVQY+V +QVA S ++ LAV++ VD+A L D + E++ + + LA +R+CPV+ F IRA S WS + LS +LT E N LAAWL S+GA Sbjct: 13 DEAYAYVCARVEAMMRQLAKGGPAAISSPGADAELH------------GLHAIATQLSALGGRFHGLEPILAGLAAARGCHAEPA-------AKKSKSCQAQSAAHTALGDRVILGHILQFTSNRSWLFIAGLSPHWRGAYMATCARHCGVARLFRTAWREALFSVDTFAAAADAGLLRKQHQHALRRQLGKWGTRVLLACASGAGFDVALEGSMLVSAAESGRPDWFIHLGRLLVTRGVLSRKNALLAAVTAARCGDG----------GGMLGWLASLGITEMPDWLVLGLATAAARHGHLHTLRWVVAHARDWGMPVPDDFFDNFAVMSCDMDEGVLFGCFEQLVGSDEFPEYYNLVDTAVRAGHLHIVQYIVGQQVATVSTESVTLAVEMGLVDVAIALQDDWD--EHDAVELMTDVLANDRNCPVELFDNIRASSLPYWSAADNLSRLLTTVEAADNVPLAAWLRSLGA 454
BLAST of jgi.p|Trimin1|337271 vs. uniprot
Match: A0A836CCY8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCY8_9STRA) HSP 1 Score: 255 bits (651), Expect = 1.200e-76 Identity = 189/478 (39.54%), Postives = 247/478 (51.67%), Query Frame = 1 Query: 4 VKEAEEAYGFVCARVEAMTRQLVKGEALTALGCCTHAKLRSRLCRVFAGRGCGAVWTAIQLSAVGGRFRGLEPLVAGLAAARDRWAEAAVNGNKAAAKQPKSCEARSAALKALGDRTILSHVLQFASRRSWVFIAGVSSHWRGVYMATCALHFGLAHLLRTAWREAFSSVDMFIAAADAGALDKKEQPALCHQLGRWGTRALLACA----TGVEFNVSLDGSMLVGAAKSGCPDWFMHLGRLLVKRRLVTLKAAVKAAVAAARCGDNAXXXXXXXXDGSMLGWITSLKLAGMPEWIVAGMAAVAAWRGHLHTLWWVNEHKDDWGVANAVMDCYDLPRKSLEEGASYGCFQRD--ETAEHFAYYDIIDMAVRAGHWHIVQYVVSEQVACPSGAAIALAVQLRRVDMAKVLLDSLEDIEYERFDDVMPALARERSCPVKFFLLIRARSTFTWSPEFLSEVLTMAEEVQNATLAAWLLSIG 1419 ++ A+EA + ARV A+ R L K +T + + L G A+ T QLSA G FRGL+ ++ LA E AA++ + ARS+A AL DR++L H+LQF RRSW++IAGV HWRG YMATCA+HFG AHLLRTAWREAFSSVD FIAAADA AL+++ + AL LGRW T+ +LACA G + L GSML AA+SG PDWF+HL LV+R+L+ + + + R G+ W +K R H L D+W L+EG +GCF D E Y+ + + AVRAGH HIV+Y+V C S A+ALA+++ R+D+AK L+ S E E DDVMP LAR+R+ PV+ F L W E L VL A+E NA L AWL G Sbjct: 3 MQPADEACCYASARVGAIMRHLSK--EITERPAAVTPSMDAEL------HGLRAIVT--QLSATGSCFRGLKLVLFQLAVV-----EKCRTAPATAARKSELPMARSSASLALSDRSMLGHILQFVGRRSWLYIAGVGPHWRGTYMATCAMHFGFAHLLRTAWREAFSSVDAFIAAADAAALEERHRHALRRHLGRWRTQEVLACALACAAGAGVDSPLHGSMLASAAESGRPDWFVHLRGQLVRRQLLVWRTPSEQPLR--RRGN----------------WGFDIK------------------RNHFDAL------PDEW----------------LDEGVLHGCFTPDVFHLDEDDKYHILSETAVRAGHLHIVRYIVDAMPRCISADAVALALRMERLDIAKALMRSWRGFEEELMDDVMPMLARQRNSPVELFAL-GWDYIDGWRYETLLMVLRTAQESGNAPLVAWLRKQG 406
BLAST of jgi.p|Trimin1|337271 vs. uniprot
Match: A0A835Z6P7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6P7_9STRA) HSP 1 Score: 251 bits (640), Expect = 9.320e-75 Identity = 164/383 (42.82%), Postives = 212/383 (55.35%), Query Frame = 1 Query: 295 KQPKSCEARSAALKALGDRTILSHVLQFASRRSWVFIAGVSSHWRGVYMATCALHFGLAHLLRTAWREAFSSVDMFIAAADAGALDKKEQPALCHQLGRWGTRALLACATGVEFNVSLDGSMLVGAAKSGCPDWFMHLGRLLVKRRL--VTLKAAVKAAVAAARCGDNAXXXXXXXXDGSMLGWITSLKLAGMPEWIVAGMAAVAAWRGHLHTLWWVNEHKDDWGVANAVMDCYDLPRKSLEEGASYGCFQR--DETAEHFAYYDIIDMAVRAGHWHIVQYVVSEQVACPSGAAIALAVQLRRVDMAKVLLD--SLEDIEYERFDDVMPALARERSCPVKFFLLIRARSTFTWSPEFLSEVLTMAEEVQNATLAAWLLSIGAV 1425 K+P+ A+ A L D +L HVLQFA R W++IAGVS HWRGVYMATCA HFG HL +TAWRE V+ I AADAGAL+ ++Q AL QLGRWGTRA LACATGV F + LDGSMLV AA+SG PDWF+HLG LL + K + AA A GD +G ML WI +P WIV G+A++AA GHL TL WV + D W V + + ++G F R D A +A +++ AVRAG IV++V+ S + LA+ R+ +A++LL S E+ R + +LA R C V R WSPE L+ ++ AE V+NA +A WL S+ V Sbjct: 61 KKPRFSSAQGARSAVLDDPLLLGHVLQFAGRSRWLYIAGVSPHWRGVYMATCAQHFGFEHLAKTAWRETLCRVETLIVAADAGALEPRQQRALREQLGRWGTRATLACATGVGFGLELDGSMLVSAARSGRPDWFVHLGNLLKESDDDGFETKHLLAAAXXXAARGD----------EGVMLEWIAQEGSDDLPTWIVPGLASIAARCGHLETLRWVVD-SDCW-VFEVDDGAFVQHIGYHVDADAHGYFTRIWDNGASRYA--TLVETAVRAGRLQIVRWVLDHVDVEQSVDTVILALSSRKPAVARLLLSKWSFEESHASR-SAAVASLAANRFCTVALLQWAREHGMGDWSPETLAIMVASAESVRNAAVATWLRSLDGV 428
BLAST of jgi.p|Trimin1|337271 vs. uniprot
Match: A0A835ZFI4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI4_9STRA) HSP 1 Score: 171 bits (434), Expect = 2.280e-45 Identity = 124/359 (34.54%), Postives = 167/359 (46.52%), Query Frame = 1 Query: 358 LSHVLQFASRRSWVFIAGVSSHWRGVYMATCALHFGLAHLLRTAWREAFSSVDMFIAAADAGAL-DKKEQPALCHQLGRWGTRALLACATGVEFNVSLDGSMLVGAAKSGCPDWFMHLGRLLVKRRLVTLKAAVKAAVAAARCGDNAXXXXXXXXDGSMLGWITSLKLA--GMPEWIVAGMAAVAAWRGHLHTLWWVNEHKDDWGVANAVMDCYD-LPRKSLEEGASYGCFQRDETAEHFAYYDIIDMAVRAGHWHIVQYVVSEQVACPSGAAIALAVQLRRVDMAKVLLDSLEDIEYERFDDVMPALARERSCPVKFFLLIRARSTFTWSPEFLSEVLTMAEEVQNATLAAWLLSIGA 1422 L VLQF W++IAGVS HWR V MATCA GL HL +T + EA SV+ F AADAG L D+ + LG+ G+R +L+CATG+ F + LD +L+ AA+SG +W +G+L+ + + ++ + AAV+AAR GD DG MLGWI GMP+WI AG+A VAA GH T+ W E D + + YD + A CF+ D+ + Y ++D AV+A D + A RS V F R W PE +SE+LT AE V+N L AWL S+ A Sbjct: 55 LKTVLQFEGGGRWLYIAGVSRHWRAVLMATCARSLGLQHLAKTRYTEAVGSVEAFAVAADAGVLNDESSARHIKRALGKRGSRVILSCATGIAFKLELDMHVLLCAAESGDFEWLKLVGKLMQETQALSRFELINAAVSAARSGD----------DGDMLGWILEQDWGEGGMPQWIGAGLATVAARHGHEFTMGWCLEDGVDRFDFPSYAEHYDDIDLDDDWAFAMQNCFEIDQRSAEAHVYGLLDTAVKA-------------------------------------------------DSAVVASLTVRSASVALFKWARENHKGQWFPETISEMLTAAERVKNKPLKAWLKSLQA 354 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|337271 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11033 ID=mRNA_11033|Name=jgi.p|Trimin1|337271|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1464bp|location=Sequence derived from alignment at Contig_88:233624..235234- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGTGAAAGAGGCGGAGGAGGCCTATGGCTTCGTATGCGCCAGGGTGGAback to top protein sequence of jgi.p|Trimin1|337271 >Trimin1|337271|MIX46034_15_44 ID=Trimin1|337271|MIX46034_15_44|Name=jgi.p|Trimin1|337271|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=478bp MVKEAEEAYGFVCARVEAMTRQLVKGEALTALGCCTHAKLRSRLCRVFAGback to top mRNA from alignment at Contig_88:233624..235234- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11033 ID=mRNA_11033|Name=jgi.p|Trimin1|337271|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1611bp|location=Sequence derived from alignment at Contig_88:233624..235234- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_88:233624..235234- >mRNA_11033 ID=mRNA_11033|Name=jgi.p|Trimin1|337271|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1434bp|location=Sequence derived from alignment at Contig_88:233624..235234- (Tribonema minus UTEX_B_3156 )back to top |