mRNA_11019 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351344
Unique NamemRNA_11019
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|351344 vs. uniprot
Match: A0A835YII5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YII5_9STRA)

HSP 1 Score: 103 bits (257), Expect = 7.760e-26
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:  208 AEEGHWHGGHRYLKGIRVLPDAPPDADYGSTNALLRQLYLQRHQAQ 345
            AEEGHWHGGHRYLKGIRVLPDAPPDADYGSTNALLRQLYLQRHQAQ
Sbjct:   70 AEEGHWHGGHRYLKGIRVLPDAPPDADYGSTNALLRQLYLQRHQAQ 115
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351344 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YII5_9STRA7.760e-26100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_88contigContig_88:85841..87430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351344|estExt_Genemark1.C_Ctg_880012
Hectar predicted targeting categoryother localisation
TranscriptId351666
TrackFilteredModels1
ProteinId351344
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351344gene_11019Tribonema minus UTEX_B_3156 geneContig_88 85841..87430 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11019_3exon_11019_3Tribonema minus UTEX_B_3156 exonContig_88 85841..86018 -
exon_11019_2exon_11019_2Tribonema minus UTEX_B_3156 exonContig_88 86428..86525 -
exon_11019_1exon_11019_1Tribonema minus UTEX_B_3156 exonContig_88 87290..87430 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11019UTR3_11019Tribonema minus UTEX_B_3156 three_prime_UTRContig_88 85841..85873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11019CDS_11019Tribonema minus UTEX_B_3156 CDSContig_88 87290..87430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351344Trimin1|351344|estExt_Genemark1.C_Ctg_880012Tribonema minus UTEX_B_3156 polypeptideContig_88 85874..87430 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11019 ID=mRNA_11019|Name=jgi.p|Trimin1|351344|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=417bp|location=Sequence derived from alignment at Contig_88:85841..87430- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGATGCAGCACCGGTTGCTATTCCAGCAGCAGCAGCAGCAGCAGTT
GCTGGAGGAGCAGGACCGGTCTGACAGGAATGCGTCTGCCAGTTCTGACG
GGAGCTACGGCCACCACCAGCACCACTGGCGCCAGCCAGCGGCAACAACG
GCAGCAGCAGCAGCAGCAGCATCGGCGGCTGCTGCATCATCATCAGCACA
CGCGGCGGCAGAGGAAGGGCACTGGCACGGAGGACACAGGTATCTCAAGG
GCATACGCGTGCTGCCGGATGCTCCCCCCGATGCTGACTACGGCTCCACC
AACGCGCTGCTGCGGCAGCTGTACCTGCAGCGGCACCAGGCGCAGCAGCG
GCAGCAGCAGCAGCAGCACCGGCAGCAGCGCTAGCTCAGGTGGCGCACCA
GGCGCAGCAGCGGCAGC
back to top

protein sequence of jgi.p|Trimin1|351344

>Trimin1|351344|estExt_Genemark1.C_Ctg_880012 ID=Trimin1|351344|estExt_Genemark1.C_Ctg_880012|Name=jgi.p|Trimin1|351344|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp
MEMQHRLLFQQQQQQQLLEEQDRSDRNASASSDGSYGHHQHHWRQPAATT
AAAAAAASAAAASSSAHAAAEEGHWHGGHRYLKGIRVLPDAPPDADYGST
NALLRQLYLQRHQAQQRQQQQQHRQQR*
back to top

mRNA from alignment at Contig_88:85841..87430-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11019 ID=mRNA_11019|Name=jgi.p|Trimin1|351344|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1590bp|location=Sequence derived from alignment at Contig_88:85841..87430- (Tribonema minus UTEX_B_3156 )
ATGGAGATGCAGCACCGGTTGCTATTCCAGCAGCAGCAGCAGCAGCAGTT
GCTGGAGGAGCAGGACCGGTCTGACAGGAATGCGTCTGCCAGTTCTGACG
GGAGCTACGGCCACCACCAGCACCACTGGCGCCAGCCAGCGGTGAGGCGG
CGCTGCCGCGCGGCACAACAGTGGCATGTTTTCGCTGTGTGCTGCTCACT
GCGCTCATGTTGCCCTCAACCGCGATGAAGTGTTACTTCAAGTAGCATGT
GAAGTTGTGGGCACCTGGTGATGCAGGGCCGAGGCACTCCGGAGGGCCAG
GGCGTCGCATACTTGTGCGCAGCGCTTATTTGATACAGTCGACAAGCAGT
ACACGAGACTGAAAGTAAGTACAAGTTGTCCGGAGTGTCTGCGCAGGTAT
GCTGCGTGCCTACAGCGCATTGCCAGTACACCGCCATCTAAGTGGCTGTG
GTAGCAATTTTAACCAACGCACTATGTGAGAACTTCAATCAACATACCAT
CCTACCACAACACGTCCGCCTGCTTGCGTGCAGTTTATGGGGCGCGGGCA
CCTGCATGCTTCACTGAACTGCGCATTTGTCTCTGCTCTGACAGATTGCA
AACGCTGGCTGCTAGTCCTCCACAATATCACAAGTCTGAGCGTGAGTGCG
TCCAGTGCTGCTTTTCTTGACAGTTTGTGGGGCAAGAAAGCACTTCAAAT
GCAGAGCAGCAGCAGTTGGTGCTTCAAGTCTGATGCATTGTTGCTGGCAC
TGCTGCTGCGGCATGGCCAACGCAACGAAAGCACCAGTAAGCCCTGGCAA
CCTGATACAGCTACACACCACAAAATGGAACGATCAACAGGTCATTACAG
CATGACGCTATTTAGTGTGCTCACGAATGCCTTGTCTGTGCACCACACCG
AGCAGGCAACAACGGCAGCAGCAGCAGCAGCAGCATCGGCGGCTGCTGCA
TCATCATCAGCACACGCGGCGGCAGAGGAAGGGCACTGGCACGGAGGACA
CAGGTGCTCATTGCTGGCGCATTCATGAGGGTTGACCCAGCACTGCTCGA
TCATGTCATGGACGCATATGACATGCTTGCACTTGAAGCTGACATCCTAC
AGTTCTTAAACGCTGGATTCTTGTATAGCCTCACCAGCCTCGAAATGTAC
GATCTGCGCTCCGGCGGGTCAGTAGGTGATGCTTGTTCGTCAAGCTAGAA
TTGCTTACAATTCAAACAGTTGAACCAGCCTCACATTACTGTGCCATCAG
CCATATGTTGGGCCAGCAAGCATGCATGCATGCCGCCGCGGCTTGCCAAC
ATTGTACTGCAGCTTCTGACCGTTGAACTCGCCTGTCAATCATGTTGAAG
CAGGTGGTTCCTTTCATTTGTCAAGTGCTGACGCTCCAACGCCGTTGTTG
TCTCATGTGCAGGTATCTCAAGGGCATACGCGTGCTGCCGGATGCTCCCC
CCGATGCTGACTACGGCTCCACCAACGCGCTGCTGCGGCAGCTGTACCTG
CAGCGGCACCAGGCGCAGCAGCGGCAGCAGCAGCAGCAGCACCGGCAGCA
GCGCTAGCTCAGGTGGCGCACCAGGCGCAGCAGCGGCAGC
back to top

Coding sequence (CDS) from alignment at Contig_88:85841..87430-

>mRNA_11019 ID=mRNA_11019|Name=jgi.p|Trimin1|351344|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_88:85841..87430- (Tribonema minus UTEX_B_3156 )
ATGGAGATGCAGCACCGGTTGCTATTCCAGCAGCAGCAGCAGCAGCAGTT
GCTGGAGGAGCAGGACCGGTCTGACAGGAATGCGTCTGCCAGTTCTGACG
GGAGCTACGGCCACCACCAGCACCACTGGCGCCAGCCAGCGGCAACAACG
GCAGCAGCAGCAGCAGCAGCATCGGCGGCTGCTGCATCATCATCAGCACA
CGCGGCGGCAGAGGAAGGGCACTGGCACGGAGGACACAGGTATCTCAAGG
GCATACGCGTGCTGCCGGATGCTCCCCCCGATGCTGACTACGGCTCCACC
AACGCGCTGCTGCGGCAGCTGTACCTGCAGCGGCACCAGGCGCAGCAGCG
GCAGCAGCAGCAGCAGCACCGGCAGCAGCGCTAG
back to top