mRNA_11016 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|351342 vs. uniprot
Match: A0A836C895_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C895_9STRA) HSP 1 Score: 685 bits (1767), Expect = 1.210e-245 Identity = 404/404 (100.00%), Postives = 404/404 (100.00%), Query Frame = 1 Query: 1 MASTLVHPKTLIVTNTVDPASVVMKDAVLARQGWTPMQGGTQHRELPMRAWEHRAGNIWMVCLEDSMIRADNIDEAFTSSHGVSSLTDVIFLSRHAAASGKPSLTCHPIGLPNPTCEPVSGGVPGKCPPPNPRMASCLRELAVATEAAGLSSEFEVTFETTHHGPWLQTPAMFCEIGSTEEHWGRRDAAEVWANVLENLLRLGSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRLSDADRRHWCELTAAERAAAPVFISLGGGHYAPKAGDLARKPGVFAGHMLANYAFDWGEGGGWRTAVAEAVAVTRSAMPGCRLAALVDKKAFKAAQKREVESLLEELAVRVEYKREGVIAAAKAAANAEGVGDAETRVVEAAAAAT 1212 MASTLVHPKTLIVTNTVDPASVVMKDAVLARQGWTPMQGGTQHRELPMRAWEHRAGNIWMVCLEDSMIRADNIDEAFTSSHGVSSLTDVIFLSRHAAASGKPSLTCHPIGLPNPTCEPVSGGVPGKCPPPNPRMASCLRELAVATEAAGLSSEFEVTFETTHHGPWLQTPAMFCEIGSTEEHWGRRDAAEVWANVLENLLRLGSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRLSDADRRHWCELTAAERAAAPVFISLGGGHYAPKAGDLARKPGVFAGHMLANYAFDWGEGGGWRTAVAEAVAVTRSAMPGCRLAALVDKKAFKAAQKREVESLLEELAVRVEYKREGVIAAAKAAANAEGVGDAETRVVEAAAAAT Sbjct: 1 MASTLVHPKTLIVTNTVDPASVVMKDAVLARQGWTPMQGGTQHRELPMRAWEHRAGNIWMVCLEDSMIRADNIDEAFTSSHGVSSLTDVIFLSRHAAASGKPSLTCHPIGLPNPTCEPVSGGVPGKCPPPNPRMASCLRELAVATEAAGLSSEFEVTFETTHHGPWLQTPAMFCEIGSTEEHWGRRDAAEVWANVLENLLRLGSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRLSDADRRHWCELTAAERAAAPVFISLGGGHYAPKAGDLARKPGVFAGHMLANYAFDWGEGGGWRTAVAEAVAVTRSAMPGCRLAALVDKKAFKAAQKREVESLLEELAVRVEYKREGVIAAAKAAANAEGVGDAETRVVEAAAAAT 404
BLAST of jgi.p|Trimin1|351342 vs. uniprot
Match: A0A6H5KXL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL5_9PHAE) HSP 1 Score: 259 bits (663), Expect = 1.320e-78 Identity = 161/390 (41.28%), Postives = 206/390 (52.82%), Query Frame = 1 Query: 7 STLVHPKTLIVTNTVDPASVVMKDAVLARQGWTPMQGGTQHRELPM-RAWEHRAG--NIWMVCLEDSMIRADNIDEAFTSSHGVSSL---------------TDVIFLSRHAAASGKPSLTCHPIGLPNPTCEPVSGGVPGKCPPPNPRMASCLRELAVATEAAGLSSEFEVTFETTHHGPWLQTPAMFCEIGSTEEHWGRRDAAEVWANVLENLLRLGSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRLSDADRRHWCELTAAERAAAPVFISLGGGHYAPKAGDLARKPGVFAGHMLANYAFDWGEGGG---WRTAVAEAVAVTRSAMPGCR------LAALVDKKAFKAAQKREVESLLEEL 1095 +T TL+V + D A M +A+LAR W + G +H RA+ H+ ++W+V E ++ D+ D + S+ V S +DV+FLS+H A SG P+L HPIG+PNP+ +GG PG+CPPP+PR+A CLREL A AGL S F+ T E THHGPWL+TPAMF EIGS+EEHWGR DAAEVWA+VL +L L +P A +W +L A RA F+ +GGGHYAPK GDLAR+ G + GHMLA+YA D+G GGG WR AV EAV TR+A PG + ALVDKKAF+A RE +LLE L Sbjct: 61 ATTATASTLLVGSKQDAAGRAMAEALLARGNWLETEPGVEHDGTRNGRAYRHKLSPTSLWLV--EGRLLDLDDADRRWASASSVGSADEQQSQQQREPLALPSDVVFLSKHVAKSGVPALCVHPIGVPNPSSSKEAGGKPGRCPPPSPRLAGCLRELCRAAREAGLDSSFDTTLEVTHHGPWLETPAMFVEIGSSEEHWGRADAAEVWASVLTRMLGLDGSP-------------------------------------------------------AGDINWRDLDPAARAERSAFVCIGGGHYAPKPGDLARRSGSYVGHMLASYALDFGRGGGEGTWREAVTEAVRSTRAAFPGAGGGVAGGVGALVDKKAFRA---RERAALLEHL 390
BLAST of jgi.p|Trimin1|351342 vs. uniprot
Match: D8LBU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBU1_ECTSI) HSP 1 Score: 253 bits (645), Expect = 5.610e-77 Identity = 154/369 (41.73%), Postives = 194/369 (52.57%), Query Frame = 1 Query: 70 MKDAVLARQGWTPMQGGTQH---RELPMRAWEHRAGNIWMVCLEDSMIRADNIDEAFTSSHGVSSL---------------TDVIFLSRHAAASGKPSLTCHPIGLPNPTCEPVSGGVPGKCPPPNPRMASCLRELAVATEAAGLSSEFEVTFETTHHGPWLQTPAMFCEIGSTEEHWGRRDAAEVWANVLENLLRLGSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRLSDADRRHWCELTAAERAAAPVFISLGGGHYAPKAGDLARKPGVFAGHMLANYAFDWGEGGG---WRTAVAEAVAVTRSAMPGCR------LAALVDKKAFKAAQKREVESLLEEL 1095 M +A+LAR W + G + R +H ++W+V E ++ D+ D + S+ V S +DV+FLS+H A SG P+L HPIG+PNP+ +GG PG+CPPP+PR+A CLREL A AGL S F+ T E THHGPWL+TPAMF EIGS+EEHWGR DAAEVWANVL +L L +P A +W +L A RA F+ +GGGHYAPK GDLAR+ G + GHMLA+YA D+G GGG WR AV EAV TR+A PG + ALVDKKAF+A RE +LLE L Sbjct: 1 MAEALLARGNWLETEPGVERDGTRNGKAYRHKHSPTSLWLV--EGRLLDLDDADRRWASASSVGSTDEKPSREQREPLALPSDVVFLSKHVAKSGVPALCVHPIGVPNPSSSKEAGGKPGRCPPPSPRLAGCLRELGRAAREAGLDSSFDTTLEVTHHGPWLETPAMFVEIGSSEEHWGRADAAEVWANVLTRMLGLDGSP-------------------------------------------------------AGDINWRDLDPAARAERSAFVCIGGGHYAPKPGDLARRSGSYVGHMLASYALDFGRGGGEGTWREAVTEAVRSTRAAFPGAGGGVAGGVGALVDKKAFRA---RERAALLEHL 309
BLAST of jgi.p|Trimin1|351342 vs. uniprot
Match: A0A4D9D3I1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3I1_9STRA) HSP 1 Score: 197 bits (502), Expect = 2.650e-55 Identity = 138/388 (35.57%), Postives = 184/388 (47.42%), Query Frame = 1 Query: 31 LIVTNTVDPASVVMKDAVLARQGW---TPMQGGTQHRELPMRAWEHRAG--NIWMVCLEDSMIRADNIDEAFTSSHGVSSLTDVIFLSRHAAASGKPSLTCHPIGLPNPTCEPVS------GGVPGKCPPPNPRMASCLRELAVATEAAGLSSEFEVTFETTHHGPWLQTPAMFCEIGSTEEHWGRRDAAEVWANVLENLLRLGSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRLSDADRRHWCELTAAERAAAPVFISLGGGHYAPKAGDLAR-KPGVFAGHMLANYAFDWGEGGGWRTAVAEAVAVTRSA--MPG------------CRLAALVDKKAFKAAQKREVESLLEELAVRVEYK 1116 L++ T D ASV M A+LAR GW TP+ + R W G N++M + +RAD +D+A+ ++H + ++IFLSRHAAASG+PSLT HPIG P P GG+PG+C PP+PRMA R+L A + AGL+ FEVT E THHGPW P MF EIGS EE WGR DAA VWA+VL+ L L +T + + AAE V + GGGHY PK DL R + V GH+LA+Y F E W+ + EA+ TR A +P R+ +DKKAFK+A ++ + LE ++ +K Sbjct: 37 LLLATTEDKASVNMLQALLARGGWEEITPVDASS-------RVWHRPDGPQNVFMWQITQGFLRADWLDKAWLTAHPSQRIQEMIFLSRHAAASGRPSLTIHPIGNPGQPFAPQEEARGEHGGIPGRCVPPSPRMAPLFRQLHGAVQDAGLAGTFEVTLEATHHGPWHMHPTMFVEIGSKEEDWGREDAAHVWADVLDKNLGLSAT----------------------------------------------------------EENGVSIPAAEEPKL-VIVGAGGGHYTPKMNDLLRHREDVLVGHILASYCFTGSEED-WKRGIDEAIQATRRAYSLPSENEEEEDGGKEETRVCVYIDKKAFKSAPRQALVQYLESRGIQCAFK 357
BLAST of jgi.p|Trimin1|351342 vs. uniprot
Match: A0A2E7KML3_9EURY (D-tyrosyl-tRNA(Tyr) deacylase n=5 Tax=Archaea TaxID=2157 RepID=A0A2E7KML3_9EURY) HSP 1 Score: 194 bits (494), Expect = 2.190e-54 Identity = 141/391 (36.06%), Postives = 191/391 (48.85%), Query Frame = 1 Query: 1 MASTLVHPKTLIVTNTVDPASVVMKDAVLARQGWTP---MQGGTQHRELPMRAWEHRAGNIWMVCLEDSMIRADNIDEAFTSSHGVSSLTDVIFLSRHAAASGKPSLTCHPIGLPNPTCEPVS-----GGVPGKCPPPNPRMASCLRELAVATEAAGLSSEFEVTFETTHHGPWLQTPAMFCEIGSTEEHWGRRDAAEVWANVLENLLRLGSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRLSDADRRHWCELTAAERAAAPVFISLGGGHYAPKAGDLARKPGVFAGHMLANYA----------FDWGEG----GGWRTAVAEAVAVTRSAMPGCRLAALVDKKAFKAAQKREVESLLEELAVRV 1107 +AST+V TL++ + D ASV+ DA+LAR GWTP ++GG W+H ++ + + ++ DN+D F+ + +VIFLSRH AASG+PSLT H IG+P T P+ GGV G+ PNPR AS R + A E L EFE+T ETTHHGP L P MF EIGS+E HW R DAA+ WA+V+E L L +W L+ ER A V I +GGGHYAP+ D+ RK +AGH LANYA +D EG G W+ ++ V TR+A P ++ A +D+K+FK Q+R ++ L EL+V V Sbjct: 13 LASTMV---TLLIVSAPDIASVIQGDALLARGGWTPCNPIEGGD--------VWQHERADVCLWWFGERVLMEDNLDLRFSQGSN-QVVEEVIFLSRHYAASGRPSLTLHVIGVPGET--PLGEIAEFGGVKGEVVLPNPRFASWYRLMCEAAERHQLIPEFELTIETTHHGPCLGVPTMFIEIGSSESHWNRTDAADAWADVMEKGLGLDG--------------------------------------------------------GEGEGNWDALSLDERKNAKVMIGIGGGHYAPRHTDVLRKTNCWAGHQLANYALEMNKPEDESWDPDEGMYPTGAWQHSIRVCVESTRAAFPDGQVMAHLDRKSFKGWQRRVIKRWLNELSVPV 333
BLAST of jgi.p|Trimin1|351342 vs. uniprot
Match: A0A075H6X3_9EURY (D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=uncultured marine group II/III euryarchaeote KM3_44_G05 TaxID=1456448 RepID=A0A075H6X3_9EURY) HSP 1 Score: 193 bits (491), Expect = 5.130e-54 Identity = 137/382 (35.86%), Postives = 184/382 (48.17%), Query Frame = 1 Query: 28 TLIVTNTVDPASVVMKDAVLARQGWTPMQ---GGTQHRELPMRAWEHRAGNIWMVCLEDSMIRADNIDEAFTS--SHGVSSLT----DVIFLSRHAAASGKPSLTCHPIGLP--NPTCEPVS-GGVPGKCPPPNPRMASCLRELAVATEAAGLSSEFEVTFETTHHGPWLQTPAMFCEIGSTEEHWGRRDAAEVWANVLENLLRLGSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRLSDADRRHWCELTAAERAAAPVFISLGGGHYAPKAGDLARKPGVFAGHMLANYAFD--------W----GE--GGGWRTAVAEAVAVTRSAMPGCRLAALVDKKAFKAAQKREVESLLEEL 1095 TL++ + D AS + DA+LAR GW Q GG +AW H + + D ++ D +DE + + + GV +VIFLSRH AASG+PSLT H IG+P +P E GG+ G+ PNPR AS R ++ A E GL EFE+T ETTHHGP L P MF EIGS+E HW RRDAAE WA+V+ + L L P +W ELTA E++ A V I +GGGHYAP+ D+ RK +AGH +A YA + W GE G W ++ V TR A P ++ A +D+K+FK Q++ ++ L EL Sbjct: 6 TLLIVSEPDIASTIQGDALLARGGWEETQTIEGG--------KAWSHETAPVHLWWFPDKVLWQDRLDERYENGANAGVDGAAVKVGEVIFLSRHFAASGRPSLTLHVIGVPGESPVGEEAEFGGIKGEVVLPNPRFASWFRMMSEAGERHGLIPEFEMTIETTHHGPCLSVPTMFIEIGSSESHWDRRDAAEAWADVITDGLGLEGKPKPG--------------------------------------------------------NWSELTAHEKSVAKVMIGIGGGHYAPRHTDVLRKTDCWAGHQIAGYALEMEKPEDPEWDPITGELPAGQWNHSIRVCVESTRQAFPSGQVIAHLDRKSFKGWQRQAIKRLCAEL 323
BLAST of jgi.p|Trimin1|351342 vs. uniprot
Match: A0A432HW31_9ARCH (D-tyrosyl-tRNA(Tyr) deacylase n=2 Tax=Archaea TaxID=2157 RepID=A0A432HW31_9ARCH) HSP 1 Score: 191 bits (486), Expect = 2.230e-53 Identity = 131/380 (34.47%), Postives = 184/380 (48.42%), Query Frame = 1 Query: 28 TLIVTNTVDPASVVMKDAVLARQGWT---PMQGGTQHRELPMRAWEHRAGNIWMVCLEDSMIRADNIDEAFTSSHGVSSLTDVIFLSRHAAASGKPSLTCHPIGLP--NPTCEPVS-GGVPGKCPPPNPRMASCLRELAVATEAAGLSSEFEVTFETTHHGPWLQTPAMFCEIGSTEEHWGRRDAAEVWANVLENLLRLGSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRLSDADRRHWCELTAAERAAAPVFISLGGGHYAPKAGDLARKPGVFAGHMLANYAFD--------WGEGGG------WRTAVAEAVAVTRSAMPGCRLAALVDKKAFKAAQKREVESLLEELAVRV 1107 TL++ + D AS V DA+L R GW P++ G R W H + + + + ++ AD +DE + ++ G + +VIFLSRH+AASG+PSLT H IG+P +P E GG+ G PPNPR A+ R + A ++ EF++T ETTHHGP L +P MF EIGS+E HWGR DAAE WA+V+ L L P L D W L+ +ERA + V + +GGGHYAP+ D+ R+ +AGH +A+YA + W G W A+ TR + PG + A +D+K+FK Q+R V L EEL + V Sbjct: 5 TLLIVSAEDIASTVQGDALLGRGGWNEADPVEEG--------RTWRHTSQPVHIWWFPERVLWADQLDERYAAASGAQ-VREVIFLSRHSAASGRPSLTLHVIGVPGESPVGESAEYGGIKGAVVPPNPRFAAWYRRMVQAAHDHAVTDEFDLTIETTHHGPSLSSPTMFIEIGSSESHWGRTDAAEAWADVISEGLGLDG---------------------------------------------------GPGLGD-----WHALSDSERAQSKVMLGIGGGHYAPRHIDVLRRTNCWAGHQIASYALEMQRPEDESWDPQTGDLPEGQWEHAIRVCAESTRQSFPGGEVMAHLDRKSFKGWQRRAVIRLCEELDIPV 319
BLAST of jgi.p|Trimin1|351342 vs. uniprot
Match: A0A2A5VPH6_9ARCH (D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Marine Group II euryarchaeote MED-G33 TaxID=2007294 RepID=A0A2A5VPH6_9ARCH) HSP 1 Score: 189 bits (480), Expect = 2.160e-52 Identity = 135/385 (35.06%), Postives = 183/385 (47.53%), Query Frame = 1 Query: 28 TLIVTNTVDPASVVMKDAVLARQGWTPM---QGGTQHRELPMRAWEHRAGNIWMVCLEDSMIRADNIDEAFTSSHGVSSLTDVIFLSRHAAASGKPSLTCHPIGLPNPTCE---PVSGGVPGKCPPPNPRMASCLRELAVATEAAGLSSEFEVTFETTHHGPWLQTPAMFCEIGSTEEHWGRRDAAEVWANVLENLLRLGSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRLSDADRRHWCELTAAERAAAPVFISLGGGHYAPKAGDLARKPGVFAGHMLANYA----------FDWGEG----GGWRTAVAEAVAVTRSAMPGCRLAALVDKKAFKAAQKREVESLLEELAVRVEYKRE 1122 TL++ + +D AS + DA+LAR GW+ M +GG R W+H+ +W+ + D +D F++ GVS + +VIFLSRH AASG+PSLT H +G+P T GG+ G+ P R AS R + A L EFE+T ETTHHGP L P MF EIGS+E HWGR DAAE WA+V+ ++ LG W L+ E++ V I +GGGHYAP+ D+ RK +AGH LANYA +D EG G W A+ +V TR A PG + +D+K+FK Q+R ++ LL EL V V R+ Sbjct: 14 TLLIVSNLDIASTIQGDALLARGGWSEMDSVEGG--------RVWKHQVNEVWLWWFGGRFLMEDELDTRFSTGVGVS-VDEVIFLSRHYAASGRPSLTLHVLGVPGETPHGERAEHGGIKGEVMLPCTRFASWYRLMCDAAHHHQLVPEFELTIETTHHGPRLDVPTMFIEIGSSETHWGRVDAAEAWADVM--VIGLGLEGGMGIG------------------------------------------------------EWNSLSDEEKSEQKVMIGVGGGHYAPRHTDVLRKTNCWAGHQLANYALGMEKPQDEAWDPDEGVLPDGAWNHAIRVSVESTRRAFPGGNVMVHLDRKSFKGWQRRVIKRLLNELGVPVGRTRD 333
BLAST of jgi.p|Trimin1|351342 vs. uniprot
Match: A0A2E6DU65_9EURY (D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E6DU65_9EURY) HSP 1 Score: 187 bits (476), Expect = 6.020e-52 Identity = 130/376 (34.57%), Postives = 180/376 (47.87%), Query Frame = 1 Query: 28 TLIVTNTVDPASVVMKDAVLARQGWTPMQGGTQHRELPMRAWEHRAGNIWMVCLEDSMIRADNIDEAFTSSHGVSSLTDVIFLSRHAAASGKPSLTCHPIGLPNPTCE---PVSGGVPGKCPPPNPRMASCLRELAVATEAAGLSSEFEVTFETTHHGPWLQTPAMFCEIGSTEEHWGRRDAAEVWANVLENLLRLGSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRLSDADRRHWCELTAAERAAAPVFISLGGGHYAPKAGDLARKPGVFAGHMLANYAF-------DWG--EG----GGWRTAVAEAVAVTRSAMPGCRLAALVDKKAFKAAQKREVESLLEELAVRV 1107 TL++ + D AS + DA+L+R GW + R W+H + + + + ++ D++D+ F + + S+++VIFLSRH AASG+PSLT H IG+P T GG+ G PN R AS R + A L EFE+T ETTHHGP L P MF EIGS+E HW RRDAAE WA+V+EN L L A W L+ + A + + +GGGHYAP+ D+ RK +AGH LANYA DW EG G W+ A+ +V T+ A PG + A +D+K+FK Q+R ++ L+EL V V Sbjct: 3 TLLIVSEPDIASTIQGDALLSRGGWLSCDSIEEGR-----VWKHESAEVCLWWFQHRVLMEDDLDQRFENGYK-QSVSEVIFLSRHYAASGRPSLTLHVIGVPGETPRGEVAEFGGIKGNVVLPNTRFASWYRLMCEAAHKHELVPEFELTIETTHHGPCLSVPTMFIEIGSSESHWNRRDAAEAWADVIENGLGLNG--------------------------------------------------------GAGIGDWNALSTDVKKQAKIMVGIGGGHYAPRHTDVLRKTECWAGHQLANYALEMLKPDDDWDPDEGAYPQGPWQHAIRVSVESTQEAFPGGMVMAHLDRKSFKGWQRRVIKRFLDELNVPV 316
BLAST of jgi.p|Trimin1|351342 vs. uniprot
Match: A0A2E7G0L3_9EURY (D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E7G0L3_9EURY) HSP 1 Score: 187 bits (476), Expect = 9.510e-52 Identity = 128/376 (34.04%), Postives = 179/376 (47.61%), Query Frame = 1 Query: 31 LIVTNTVDPASVVMKDAVLARQGWTPMQGGTQHRELPMRAWEHRAGNIWMVCLEDSMIRADNIDEAFTSSHGVSSLTDVIFLSRHAAASGKPSLTCHPIGLPNPTC---EPVSGGVPGKCPPPNPRMASCLRELAVATEAAGLSSEFEVTFETTHHGPWLQTPAMFCEIGSTEEHWGRRDAAEVWANVLENLLRLGSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRLSDADRRHWCELTAAERAAAPVFISLGGGHYAPKAGDLARKPGVFAGHMLANYAF--------DWGEG------GGWRTAVAEAVAVTRSAMPGCRLAALVDKKAFKAAQKREVESLLEELAVRV 1107 L++ + D ASV+ +AVL R W + G ++ RAW+H +IW+ ++ + +N+D F+++ G ++++VIFLSRH AASG PSLT H IG+P E GG+ G+ PNPR A R + A L EF++T ETTHHGP L P MF EIGS+E HW RRDAAE WA+V+ L L + + W LT +RA V + +GGGHYAP+ D+ RK +AGH LA Y+ DW G W+ ++ A+ TR A G + A +D+K+FK Q+R + LL EL V V Sbjct: 20 LLMVSEQDIASVIQGEAVLGRSKWIQI-GAIEN----CRAWKHFQKDIWIWWIKSGFLFENNLDSRFSNATG-ENISEVIFLSRHFAASGMPSLTLHVIGVPGEIPHGEEAEHGGIKGRVVQPNPRFADWYRLMCKAAVEHDLVPEFDLTIETTHHGPILDVPTMFVEIGSSESHWNRRDAAEAWADVIVEGLGLDG--------------------------------------------------------GSGKGDWSSLTTEQRANEKVMVGIGGGHYAPRHSDVIRKTRCWAGHQLAGYSLPMEKPTDVDWDPDTGNYPVGAWKHSIETAIISTRLAFEGSTVMAHLDRKSFKGWQRRIIHRLLNELEVPV 333 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351342 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11016 ID=mRNA_11016|Name=jgi.p|Trimin1|351342|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1434bp|location=Sequence derived from alignment at Contig_88:66491..69600+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGAGCACTCTGGTGCACCCGAAGACGCTCATAGTCACAAACACGGTback to top protein sequence of jgi.p|Trimin1|351342 >Trimin1|351342|estExt_Genemark1.C_Ctg_880009 ID=Trimin1|351342|estExt_Genemark1.C_Ctg_880009|Name=jgi.p|Trimin1|351342|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=405bp MASTLVHPKTLIVTNTVDPASVVMKDAVLARQGWTPMQGGTQHRELPMRAback to top mRNA from alignment at Contig_88:66491..69600+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11016 ID=mRNA_11016|Name=jgi.p|Trimin1|351342|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3110bp|location=Sequence derived from alignment at Contig_88:66491..69600+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_88:66491..69600+ >mRNA_11016 ID=mRNA_11016|Name=jgi.p|Trimin1|351342|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1215bp|location=Sequence derived from alignment at Contig_88:66491..69600+ (Tribonema minus UTEX_B_3156 )back to top |