mRNA_11013 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|337204
Unique NamemRNA_11013
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|337204 vs. uniprot
Match: A0A836C7R4_9STRA (MgtC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R4_9STRA)

HSP 1 Score: 575 bits (1481), Expect = 8.020e-206
Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 1 
Query:    1 MRGPHMARLSVCQMLSICTVCLMVIITRPRCGICLXXXXXXXXXXXXCDGDAHQATMRRPHLARLSVCVRCSAFVPFALMVMIIRPRCGPCLSMCQMLSASXXXXXXXXXXXXXXARIWHVSPCVSDAQRLPRLPLWRCSSGHDAGLRTHILVCLGASLFTLSGAVSKNTNVDETRIAAQVVSGIGFLGAGAIVREGLWVRGLTTAAALWVTAAMGVALGLGAYASAGLTMALVMVTLAGLQQLEDRVFYTWRRRIVMLDLVPNQPPSAVVVPALKALGSAHVSAVTALANGAKRLRISSRLRLNENLPLLAETLMGIEGVAGVEILHA 987
            MRGPHMARLSVCQMLSICTVCLMVIITRPRCGICLXXXXXXXXXXXXCDGDAHQATMRRPHLARLSVCVRCSAFVPFALMVMIIRPRCGPCLSMCQMLSASXXXXXXXXXXXXXXARIWHVSPCVSDAQRLPRLPLWRCSSGHDAGLRTHILVCLGASLFTLSGAVSKNTNVDETRIAAQVVSGIGFLGAGAIVREGLWVRGLTTAAALWVTAAMGVALGLGAYASAGLTMALVMVTLAGLQQLEDRVFYTWRRRIVMLDLVPNQPPSAVVVPALKALGSAHVSAVTALANGAKRLRISSRLRLNENLPLLAETLMGIEGVAGVEILHA
Sbjct:    1 MRGPHMARLSVCQMLSICTVCLMVIITRPRCGICLXXXXXXXXXXXXCDGDAHQATMRRPHLARLSVCVRCSAFVPFALMVMIIRPRCGPCLSMCQMLSASXXXXXXXXXXXXXXARIWHVSPCVSDAQRLPRLPLWRCSSGHDAGLRTHILVCLGASLFTLSGAVSKNTNVDETRIAAQVVSGIGFLGAGAIVREGLWVRGLTTAAALWVTAAMGVALGLGAYASAGLTMALVMVTLAGLQQLEDRVFYTWRRRIVMLDLVPNQPPSAVVVPALKALGSAHVSAVTALANGAKRLRISSRLRLNENLPLLAETLMGIEGVAGVEILHA 329
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BLAST of jgi.p|Trimin1|337204 vs. uniprot
Match: UPI0003713513 (MgtC/SapB family protein n=1 Tax=Longispora albida TaxID=203523 RepID=UPI0003713513)

HSP 1 Score: 129 bits (325), Expect = 1.360e-32
Identity = 90/186 (48.39%), Postives = 116/186 (62.37%), Query Frame = 1 
Query:  421 SGHDAGLRTHILVCLGASLFTLSGAVSKNTNVDETRIAAQVVSGIGFLGAGAIVREGLWVRGLTTAAALWVTAAMGVALGLGAYASAGLTMALVMVTLAGLQQLEDRVFYTWRRRIVMLDLVPNQPPSAVVVPALKALGSAHVSAVTALANGAKRLRISSRLRLNENLPLLAETLMGIEGVAGVEI 978
            S   AGLRTH+LVCLGA+L T++GA       D TRIAAQV++GIGFLG GAI+REGL V GLTTAA+LWVTA++G+A GL A+  A     LV+V L  L++LED +    R   V L +    P + V    L A  S  VS+V  + +G++ L +S + R    L  +AE L  IEGV GV I
Sbjct:   27 SAQHAGLRTHMLVCLGATLATVAGA--SLPGADPTRIAAQVITGIGFLGGGAILREGLTVHGLTTAASLWVTASIGLAFGLRAWWPAAAGTVLVLVVLVLLKKLEDELLPRRRPLEVTLTVASGVPLTTVERAVLAAWPSCKVSSVRYV-SGSESLVLSVKSRRGATLAGIAEQLRTIEGVDGVAI 209
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BLAST of jgi.p|Trimin1|337204 vs. uniprot
Match: UPI0005254C63 (MgtC/SapB family protein n=2 Tax=Dactylosporangium TaxID=35753 RepID=UPI0005254C63)

HSP 1 Score: 122 bits (306), Expect = 7.900e-30
Identity = 93/210 (44.29%), Postives = 127/210 (60.48%), Query Frame = 1 
Query:  355 WHVSPCVSDAQRLPR-LPLWRCSSGHDAGLRTHILVCLGASLFTLSGAVSKNTNVDETRIAAQVVSGIGFLGAGAIVREGLWVRGLTTAAALWVTAAMGVALGLGAYASAGLTMALVMVTLAGLQQLEDRVFYTWRRRI-VMLDLVPNQPPSAVVVPALKALGSAHVSAVTALANGAKRLRISSRLRLNENLPLLAETLMGIEGVAGVEI 978
            W V P +  A  L   + L R      AGLRTH+LV  GA+LFT++G   K    D TRIAAQVV+GIGFLGAGAI +EG+ + GLTTAA+LWVTAA+G+A GL  + +AG    + +  L  L ++ +  +   R RI V L L P+ P   V   AL+A+  AHV  V   A   + + +++R   + +LP +AETL  ++GV GVEI
Sbjct:    3 WTVIPTLLIAIFLGAVIGLEREIGAQPAGLRTHMLVAAGAALFTIAG---KEVGTDPTRIAAQVVTGIGFLGAGAIFKEGVNISGLTTAASLWVTAAIGLATGLRLFWAAGAVTVIALGAL-WLFKVAEANWLPDRHRIQVTLTLAPDFPLDVVEREALEAMPGAHVLRVD-YAGHDQSIVLTARGDNSTSLPAIAETLRLLDGVQGVEI 207
[Close]
BLAST of jgi.p|Trimin1|337204 vs. uniprot
Match: A0A8J8GYT1_9ACTN (MgtC/SapB family protein n=2 Tax=Hamadaea sp. TaxID=2024425 RepID=A0A8J8GYT1_9ACTN)

HSP 1 Score: 120 bits (301), Expect = 4.480e-29
Identity = 84/186 (45.16%), Postives = 115/186 (61.83%), Query Frame = 1 
Query:  421 SGHDAGLRTHILVCLGASLFTLSGAVSKNTNVDETRIAAQVVSGIGFLGAGAIVREGLWVRGLTTAAALWVTAAMGVALGLGAYASAGLTMALVMVTLAGLQQLEDRVFYTWRRRIVMLDLVPNQPPSAVVVPALKALGSAHVSAVTALANGAKRLRISSRLRLNENLPLLAETLMGIEGVAGVEI 978
            +   AGLRTH+LV LGA LFTLSGA       D TRIAAQVV+GIGFLG GAI+REG  +RGLTTAA+LWVTAA+G A+GL  +  A  T AL ++ L+ ++ +E       R   + L L P+     V    ++AL  + V+ V+    G + L ++S+ +   +L ++ E L G+ GV GVEI
Sbjct:   27 NAQPAGLRTHMLVSLGAGLFTLSGAYLPGD--DPTRIAAQVVTGIGFLGGGAILREGANIRGLTTAASLWVTAAIGTAVGLRWWFPAIATTALALIVLSLVKYVEREALPRRRLLEITLTLEPDARLDRVEQEVMEALPRSRVTRVSYSLTG-QALVMTSQPQNGTSLSVVGERLRGLAGVHGVEI 209
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BLAST of jgi.p|Trimin1|337204 vs. uniprot
Match: UPI00167C803B (Uncharacterized protein n=2 Tax=Dactylosporangium sucinum TaxID=1424081 RepID=UPI00167C803B)

HSP 1 Score: 119 bits (299), Expect = 8.340e-29
Identity = 89/189 (47.09%), Postives = 115/189 (60.85%), Query Frame = 1 
Query:  433 AGLRTHILVCLGASLFTLSGAVSKNTNVDETRIAAQVVSGIGFLGAGAIVREGLWVRGLTTAAALWVTAAMGVALGLGAY-----ASAGLTMALVMVTLAGLQQLEDRVFYTWRRRIVMLDLVPNQPPSAVVVPALKALGSAHVSAVTALANGAKRLRISSRLRLNENLPLLAETLMGIEGVAGVEILH 984
            AGLRTH+LV  GASLFT++G       VD TRIAAQVV+GIGFLGAGAI+REG+ + GLTTAA+LWVTAA+GV  GL  Y     A+A    AL +  +A    L DR     +R  V L L P+ P   V   A+ AL +A V  +   A   + L +++R     +LP +AE L  ++GV GVEI+ 
Sbjct:   30 AGLRTHMLVAGGASLFTIAGY---EVGVDPTRIAAQVVTGIGFLGAGAILREGVNISGLTTAASLWVTAAIGVVTGLRLYWPAVAATAVAVAALWLFKMAEAHWLPDR-----QRVRVTLTLAPDFPLDVVEREAVAALPAARVLRIE-YAGHDQTLVLTARADGTASLPAIAEALRRLDGVRGVEIVR 209
[Close]
BLAST of jgi.p|Trimin1|337204 vs. uniprot
Match: A0A7W1JVE9_9ACTN (MgtC/SapB family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1JVE9_9ACTN)

HSP 1 Score: 120 bits (300), Expect = 9.450e-29
Identity = 82/193 (42.49%), Postives = 117/193 (60.62%), Query Frame = 1 
Query:  430 DAGLRTHILVCLGASLFTLSGA------VSKNTNV---DETRIAAQVVSGIGFLGAGAIVREGLWVRGLTTAAALWVTAAMGVALGLGAYASAGLTMALVMVTLAGLQQLEDRVFYTWRRRI--VMLDLVPNQPPSAVVVPALKALGSAHVSAVTALANGAKRLRISSRLRLNENLPLLAETLMGIEGVAGVE 975
            +AGLRTH+LV LG++LFT+ GA      +    NV   D TRIAAQ+V+GIGFLGAGAI+R+GL VRGLTTAA LWV AA+G+A G G Y++A +T ALV++ L  L+ +  R+   +R     ++++L     P   ++ A++A G+   S V +     +RL +   L  N   P L   L  +E V  V+
Sbjct:   33 EAGLRTHLLVSLGSALFTIVGAYGFHESLDSGANVVRADPTRIAAQIVTGIGFLGAGAIIRQGLSVRGLTTAATLWVVAAVGLACGAGYYSAAVITTALVLLALYPLRVIAYRILVRFRPEDGHLLVELHAGAAPGE-IIDAVEATGARVDSVVVSQEGDRRRLELGLALPKNARSPELVLKLADVESVVEVQ 224
[Close]
BLAST of jgi.p|Trimin1|337204 vs. uniprot
Match: A0A537TWH0_9ACTN (MgtC/SapB family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537TWH0_9ACTN)

HSP 1 Score: 119 bits (298), Expect = 1.850e-28
Identity = 76/150 (50.67%), Postives = 98/150 (65.33%), Query Frame = 1 
Query:  433 AGLRTHILVCLGASLFTLSGA------VSKNTNV---DETRIAAQVVSGIGFLGAGAIVREGLWVRGLTTAAALWVTAAMGVALGLGAYASAGLTMALVMVTLAGLQQLEDRVFYTWRR--RIVMLDLVPNQPPSAVVVPALKALGSAHV 849
            AGLRTH+LV +GA+LFT+  A      +    NV   D TR+AAQ+V+GIGFLGAGAI+R+GL VRGLTTAA LWV AA+G A+G G Y++  +T  +V+V L   + LE  V  +WRR  R+V +D+ P QP    V P L AL    V
Sbjct:   35 AGLRTHMLVGVGAALFTIVSAYAWTDFIQAGGNVVRLDPTRVAAQIVTGIGFLGAGAIIRQGLSVRGLTTAAGLWVVAAIGTAIGAGFYSAGLITTGIVLVGLGPFRWLEGGVLRSWRRQGRVVEVDIRPQQP----VAPVLSALEGRRV 180
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BLAST of jgi.p|Trimin1|337204 vs. uniprot
Match: A0A7Y6CKL5_9ACTN (MgtC/SapB family protein n=2 Tax=Actinomycetia TaxID=1760 RepID=A0A7Y6CKL5_9ACTN)

HSP 1 Score: 118 bits (296), Expect = 2.230e-28
Identity = 84/187 (44.92%), Postives = 118/187 (63.10%), Query Frame = 1 
Query:  421 SGHDAGLRTHILVCLGASLFTLSGAVSKNTNVDETRIAAQVVSGIGFLGAGAIVREGLWVRGLTTAAALWVTAAMGVALGLGA-YASAGLTMALVMVTLAGLQQLEDRVFYTWRRRIVMLDLVPNQPPSAVVVPALKALGSAHVSAVTALANGAKRLRISSRLRLNENLPLLAETLMGIEGVAGVEI 978
            +   AGLRTH+LVCLGA++FTL+G     +  D TRIAAQVV+GIGFLG GAI+R+G+ VRGLTTAA+LW+TAA+G+A+GL   +A    T+A V+V L  ++++E  V  T R   + L L P+ P   V   A+  L  A V  V+  A G  +  + +     ++L ++ E L  + GV GVEI
Sbjct:   25 NAQTAGLRTHMLVCLGAAVFTLAGVGVGGS--DPTRIAAQVVTGIGFLGGGAILRDGVTVRGLTTAASLWMTAAIGLAVGLKWWFAPVAATVAAVIV-LWVIKRIEQEVIPTRRSLEIRLSLEPDAPLDVVEQEAIAVLQRARVLQVSYDATG--QSLVLAGQPAGDSLTVVGEHLRALPGVRGVEI 206
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BLAST of jgi.p|Trimin1|337204 vs. uniprot
Match: UPI001834904A (MgtC/SapB family protein n=1 Tax=Hamadaea sp. TaxID=2024425 RepID=UPI001834904A)

HSP 1 Score: 117 bits (293), Expect = 7.500e-28
Identity = 81/186 (43.55%), Postives = 115/186 (61.83%), Query Frame = 1 
Query:  421 SGHDAGLRTHILVCLGASLFTLSGAVSKNTNVDETRIAAQVVSGIGFLGAGAIVREGLWVRGLTTAAALWVTAAMGVALGLGAYASAGLTMALVMVTLAGLQQLEDRVFYTWRRRIVMLDLVPNQPPSAVVVPALKALGSAHVSAVTALANGAKRLRISSRLRLNENLPLLAETLMGIEGVAGVEI 978
            S   AGLRTH+LV LGA+LFTL+G     +  D TRIAAQVV+GIGFLG GAI+REG  +RGLTTAA+LWVTAA+G+A+GL  + +A  T  L +  LA ++ +E       R   ++L L P+     V      +L  + V  V+  A G + L ++++ +   +L ++ E L  ++GV GVEI
Sbjct:   32 SAQPAGLRTHMLVSLGAALFTLAGTNLPGS--DPTRIAAQVVTGIGFLGGGAILREGANIRGLTTAASLWVTAAIGLAVGLRWWYAAAATTILALTVLALVKYVEREALPRRRMLEIVLTLEPDAHLDRVEQEVKSSLPRSRVLKVSYSATG-QALVLTAQPQNGTSLSVIGERLRALQGVHGVEI 214
[Close]
BLAST of jgi.p|Trimin1|337204 vs. uniprot
Match: UPI000370295F (MgtC/SapB family protein n=1 Tax=Catelliglobosispora koreensis TaxID=129052 RepID=UPI000370295F)

HSP 1 Score: 117 bits (292), Expect = 9.000e-28
Identity = 87/193 (45.08%), Postives = 115/193 (59.59%), Query Frame = 1 
Query:  400 LPLWRCSSGHDAGLRTHILVCLGASLFTLSGAVSKNTNVDETRIAAQVVSGIGFLGAGAIVREGLWVRGLTTAAALWVTAAMGVALGLGAYASAGLTMALVMVTLAGLQQLEDRVFYTWRRRIVMLDLVPNQPPSAVVVPALKALGSAHVSAVTALANGAKRLRISSRLRLNENLPLLAETLMGIEGVAGVEI 978
            L L R  S   AGLRTH+LVC+G++LFTL+GA    T  D TR+AAQVV+GIGFLG GAI+REG  VRGLTTAA+LWV AA+G+++GL  +  A     L +  L+ L+  E  V    R   V+L L P+ P   V   A   L  A VS V+    G + L ++ + +    L  L E L  ++GV GVE+
Sbjct:   19 LGLERELSAQPAGLRTHMLVCIGSALFTLAGAEVVGT--DPTRVAAQVVTGIGFLGGGAILREGTTVRGLTTAASLWVAAAIGLSVGLRLWFVAVGATVLGLTVLSLLKYFEREVLPRRRLLEVVLTLEPDAPLDQVEQEANLILRRARVSRVSYNDTG-QSLVLTCQPQNGTPLASLGERLRRLKGVQGVEV 208
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|337204 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C7R4_9STRA8.020e-206100.00MgtC family-domain-containing protein n=1 Tax=Trib... [more]
UPI00037135131.360e-3248.39MgtC/SapB family protein n=1 Tax=Longispora albida... [more]
UPI0005254C637.900e-3044.29MgtC/SapB family protein n=2 Tax=Dactylosporangium... [more]
A0A8J8GYT1_9ACTN4.480e-2945.16MgtC/SapB family protein n=2 Tax=Hamadaea sp. TaxI... [more]
UPI00167C803B8.340e-2947.09Uncharacterized protein n=2 Tax=Dactylosporangium ... [more]
A0A7W1JVE9_9ACTN9.450e-2942.49MgtC/SapB family protein n=1 Tax=Actinomycetia bac... [more]
A0A537TWH0_9ACTN1.850e-2850.67MgtC/SapB family protein n=1 Tax=Actinomycetia bac... [more]
A0A7Y6CKL5_9ACTN2.230e-2844.92MgtC/SapB family protein n=2 Tax=Actinomycetia Tax... [more]
UPI001834904A7.500e-2843.55MgtC/SapB family protein n=1 Tax=Hamadaea sp. TaxI... [more]
UPI000370295F9.000e-2845.08MgtC/SapB family protein n=1 Tax=Catelliglobosispo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_88contigContig_88:52213..55493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|337204|MIX45967_2_18
KEGG TC9.B.20
BRITEko00000,ko02000
KEGG koko:K07507
Preferred namemgtC
DescriptionMgtC family
COG categoryS
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG1285@1|root,COG1285@2|Bacteria,2GJF0@201174|Actinobacteria,4DDK5@85008|Micromonosporales
Evalue2.23e-33
Seed ortholog1122182.KB903822_gene1237
Hectar predicted targeting categorysignal peptide
TranscriptId337526
TrackFilteredModels1
ProteinId337204
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|337204gene_11013Tribonema minus UTEX_B_3156 geneContig_88 52213..55493 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11013_1exon_11013_1Tribonema minus UTEX_B_3156 exonContig_88 52213..52752 +
exon_11013_2exon_11013_2Tribonema minus UTEX_B_3156 exonContig_88 54471..54611 +
exon_11013_3exon_11013_3Tribonema minus UTEX_B_3156 exonContig_88 55185..55493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11013CDS_11013Tribonema minus UTEX_B_3156 CDSContig_88 52213..52752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|337204Trimin1|337204|MIX45967_2_18Tribonema minus UTEX_B_3156 polypeptideContig_88 52213..55493 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11013 ID=mRNA_11013|Name=jgi.p|Trimin1|337204|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=990bp|location=Sequence derived from alignment at Contig_88:52213..55493+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGGCCCGCACATGGCACGTCTCTCCGTGTGTCAGATGCTCAGCAT
CTGTACCGTTTGCCTTATGGTAATTATCACCAGGCCCCGATGCGGCATCT
GTCTCTCCATGTGTCAGATGCTCAGCGCTTGCGCCGTATGCTGCGATGGC
GATGCTCATCAGGCCACGATGCGGCGCCCGCATTTGGCACGTCTCTCCGT
GTGTGTCAGATGCTCAGCATTTGTACCGTTTGCCCTTATGGTGATGATCA
TCAGGCCACGATGCGGCCCCTGTCTCTCCATGTGTCAGATGCTCAGCGCT
TCGCCGTTTGCTGTTATGGCGATGCTCATCAGGCCACGATGCGGCGCCCG
CATATGGCACGTCTCTCCGTGTGTGTCGGATGCTCAGCGCTTGCCCCGTT
TGCCCTTATGGCGATGCTCATCAGGCCACGATGCGGGGCTGCGGACGCAC
ATCCTGGTGTGCCTGGGCGCATCGCTGTTCACGCTCTCGGGTGCCGTCTC
CAAGAACACCAACGTGGACGAGACGCGCATTGCAGCGCAGGTGGTCAGCG
GCATAGGCTTCCTAGGCGCAGGTGCCATCGTGCGTGAGGGCCTCTGGGTG
CGCGGCCTGACAACGGCCGCCGCGCTGTGGGTGACAGCCGCCATGGGCGT
CGCACTGGGCCTCGGCGCCTATGCATCAGCGGGCCTAACCATGGCGCTTG
TCATGGTCACCCTGGCGGGCCTCCAGCAGCTCGAAGACCGCGTCTTCTAC
ACGTGGCGCCGCCGCATCGTCATGCTGGACCTCGTCCCTAACCAGCCGCC
GAGCGCCGTAGTGGTACCCGCGCTCAAAGCACTGGGCTCCGCGCACGTGT
CGGCAGTAACGGCGCTAGCCAATGGCGCGAAGCGGCTGCGCATCTCGTCG
CGGCTGCGCCTGAATGAAAACCTGCCGCTGCTCGCCGAGACGCTCATGGG
GATAGAGGGGGTCGCGGGCGTCGAGATCCTGCACGCGTAG
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protein sequence of jgi.p|Trimin1|337204

>Trimin1|337204|MIX45967_2_18 ID=Trimin1|337204|MIX45967_2_18|Name=jgi.p|Trimin1|337204|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=330bp
MRGPHMARLSVCQMLSICTVCLMVIITRPRCGICLSMCQMLSACAVCCDG
DAHQATMRRPHLARLSVCVRCSAFVPFALMVMIIRPRCGPCLSMCQMLSA
SPFAVMAMLIRPRCGARIWHVSPCVSDAQRLPRLPLWRCSSGHDAGLRTH
ILVCLGASLFTLSGAVSKNTNVDETRIAAQVVSGIGFLGAGAIVREGLWV
RGLTTAAALWVTAAMGVALGLGAYASAGLTMALVMVTLAGLQQLEDRVFY
TWRRRIVMLDLVPNQPPSAVVVPALKALGSAHVSAVTALANGAKRLRISS
RLRLNENLPLLAETLMGIEGVAGVEILHA*
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mRNA from alignment at Contig_88:52213..55493+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11013 ID=mRNA_11013|Name=jgi.p|Trimin1|337204|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3281bp|location=Sequence derived from alignment at Contig_88:52213..55493+ (Tribonema minus UTEX_B_3156 )
ATGCGGGGCCCGCACATGGCACGTCTCTCCGTGTGTCAGATGCTCAGCAT
CTGTACCGTTTGCCTTATGGTAATTATCACCAGGCCCCGATGCGGCATCT
GTCTCTCCATGTGTCAGATGCTCAGCGCTTGCGCCGTATGCTGCGATGGC
GATGCTCATCAGGCCACGATGCGGCGCCCGCATTTGGCACGTCTCTCCGT
GTGTGTCAGATGCTCAGCATTTGTACCGTTTGCCCTTATGGTGATGATCA
TCAGGCCACGATGCGGCCCCTGTCTCTCCATGTGTCAGATGCTCAGCGCT
TCGCCGTTTGCTGTTATGGCGATGCTCATCAGGCCACGATGCGGCGCCCG
CATATGGCACGTCTCTCCGTGTGTGTCGGATGCTCAGCGCTTGCCCCGTT
TGCCCTTATGGCGATGCTCATCAGGCCACGATGCGGGGCTGCGGACGCAC
ATCCTGGTGTGCCTGGGCGCATCGCTGTTCACGCTCTCGGGTGCCGTCTC
CAAGAACACCAACGTGGACGAGACGCGCATTGCAGCGCAGGTGAGAACAA
TCACGATAATTTTCTTCAGACCTTTCTGCCATGCCAAGCTGTGCCTCAAG
AGGTGACTGCTGTTGAACAATGCTTGTGCATTTTGCGAGGCAGGGCTCTA
AGCGCCATGCGCTAGCTAGCGGGTGCCATCATGTAATAAGGTAATAACAA
TGTTGATGATCTGCGCATCAGAGCAACACGCATCACCAATGGAAACGAAT
CAAAATACCGTAGACTTTTAGGTGACGAAAGATGGTAAGCAATATGTGTG
GGGTAGGCTGTTTTAAGCCCCAAAACACAGAGTGTGTGATGGCCAGACCA
GTTGTAGGTCAGCCCACACTGAGCTGTAGGTGAAAAACAGCAGGCCACTT
GTTGACTCCAGGTTGGCAAAGCAGGGCAGGGTTGCAAAGTCTGACACTGT
CGTGTTGCAGGTTAAGAGTGATTGCATTGCAAGGGAGCAGAGGAGAGCTG
CTGCCAACAGTTGGCAACTTAGAGAGCCAGTGTGGGCACACCCAGGGCCA
GAGTGGTGGGCCTGATTGGTAGACAACTAATCAATCATAGGTGGCAGTTA
CACCACACCAAGGGTGCCAAAGTAGTTGGCCTCATGGTGGGCAACTGACC
AACGGTAGATGGCAGTTACGGAAGTTGAAAGATGAAGTTGTGGGGCGGAT
AAAGGGGCAGATTCCCACATTTGTCATGGAGCCTTCTGCTATGGCGCAGT
CCATCTTGCAGGGGGAAGTGACAAAGTTTTTTGCGCGCCTGTCCGAGGTG
CAATGGCGCGCATGAGGCAAACAGCTAGTTTGTCATGTTCATGTCGCTCT
ACAGGTGGGGACATTCCTTGTCAGGACATTCTGCGGGAAGTGATGCTATA
GCAAACGCATCTCAGCGACTGTCCCTAATTGCTTCATTAGCAGCAGTGCA
AACGCCTCTCAGCGACTGTCCCTTGATTGCTTTCATCAGTAGCAGTGCGT
GCTGCGTGCCAGAATCCGCGGGTGCCGTTCCAAGAGCAACTCGTGCAGCG
CTAACTCTAATCCAGCCCTGGCCTTCGAGGGGACCGCACGCTGCGGCGCG
CGTGAGAGCCGGCAGACCGCCTGCTCGCGAGGGTTACGGCCAGGGATAGG
GTTGAAGTTAGGGTTAGGGTTAGGAATGGGGGTCAATGCTGAGCTCTGCA
TGGTCAGCTACAGGGCTCTGCCACAGCCCCGCGCTGCAAGTACTGACATA
TACGCATGGCCAAGTACTGACATGTACGCATCGGGGACCTGGCATACGTG
GAATGCGTACTTTCTCTTGTTGCGAGCTTGGGAGGGGGGAGGCGGAGAAA
GCACACCTCGTGCTGGTCGTGGCAGGGGCAGTCTGGGCCACATACACGCT
ACGGTGGTTTCGCGCCGTGACGGCGTGCGCTTCCCAAACCTCACCGCGCA
GCCAACTCCAAGCGTAACCCGCTCGACGCAAGGATGCTGCCGCAGCACAC
CGACGCGCGCGTTTTCCAATGCGCCTCGCTCGCCGCTCCGCGTTGCAGGT
GGTCAGCGGCATAGGCTTTCTGGGCGCAGGCGCCATCGTGCGCGAGGCCT
CTGAATCAACTTCAAAAATCAACCTCAAGAACTAGCTTCAAGTGTTGCCG
CGTGCGTCGCCAAATCGTGCAATGCAGAAATGCGCCGCCATGCTGCCCAA
CGTGACATGCTGACGCGCGCGTATTCCATTGTGTCGCGCTCGCCGCTCCG
CGTTGCAGGTGGTCAGCGGCATAGGCTTCCTAGGCGCAGGTGCCATCGTG
CGTGAGGGCCTCTGGGTGCGCGGCCTGACAACGGCCGCCGCGCTGTGGGT
GACAGCCGCCATGGGCGTCGCACTGGGCCTCGGCGCCTATGCATCAGCGG
TGAGCACTGCCGCATGATAGAGTGAGAGTGAGGGTAAGAGTTGTTGGTGA
GGCGCTCGGAGTATGAGTCAGAGTCATGGGGGTCGCCCTCGGCCTGGGCG
CCCCACGCGTCAGCGGTGAGCACTGCTGCAAGCTAGAAATAGAGTCAGAG
TATGAGTCAGAGTCATGGGCGTTGCGCTCGGCCTCAGCGCCTACGCGTCA
GCGGTGAGCGCTGCCGTATGCTAGAGCAGAGTATGAGCCTTGCGGGCATT
GAGCAGGGCCTCGGCGCCTAAGCGTCAGCGGTGAGGGCTGGTGCTGGTCA
GAATCAGAGGTGCAGGCAGTGTGTCGGTGCATGATACTGATGGTGATGCT
ATTAATTGATGCCCACGCGCCTGCGGCAGCCAGTAGAAGATTGCATGTTT
TACATGTGGTAGCAACAGCTTGCGCGTTCGACGGTCACTTTGCCGCTTGT
ACCCTGTGGGCTCAAGTTAGGTCAAGATTTATGATTACTGTTCAAGATCA
ATCAAAATCAGAATCAGGCCCAAGCCCCACGAGGCTCTGATCGCCCCCCC
CCCCCCCCTTCCCCCCCTGCAGGGCCTAACCATGGCGCTTGTCATGGTCA
CCCTGGCGGGCCTCCAGCAGCTCGAAGACCGCGTCTTCTACACGTGGCGC
CGCCGCATCGTCATGCTGGACCTCGTCCCTAACCAGCCGCCGAGCGCCGT
AGTGGTACCCGCGCTCAAAGCACTGGGCTCCGCGCACGTGTCGGCAGTAA
CGGCGCTAGCCAATGGCGCGAAGCGGCTGCGCATCTCGTCGCGGCTGCGC
CTGAATGAAAACCTGCCGCTGCTCGCCGAGACGCTCATGGGGATAGAGGG
GGTCGCGGGCGTCGAGATCCTGCACGCGTAG
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Coding sequence (CDS) from alignment at Contig_88:52213..55493+

>mRNA_11013 ID=mRNA_11013|Name=jgi.p|Trimin1|337204|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=990bp|location=Sequence derived from alignment at Contig_88:52213..55493+ (Tribonema minus UTEX_B_3156 )
ATGCGGGGCCCGCACATGGCACGTCTCTCCGTGTGTCAGATGCTCAGCAT
CTGTACCGTTTGCCTTATGGTAATTATCACCAGGCCCCGATGCGGCATCT
GTCTCTCCATGTGTCAGATGCTCAGCGCTTGCGCCGTATGCTGCGATGGC
GATGCTCATCAGGCCACGATGCGGCGCCCGCATTTGGCACGTCTCTCCGT
GTGTGTCAGATGCTCAGCATTTGTACCGTTTGCCCTTATGGTGATGATCA
TCAGGCCACGATGCGGCCCCTGTCTCTCCATGTGTCAGATGCTCAGCGCT
TCGCCGTTTGCTGTTATGGCGATGCTCATCAGGCCACGATGCGGCGCCCG
CATATGGCACGTCTCTCCGTGTGTGTCGGATGCTCAGCGCTTGCCCCGTT
TGCCCTTATGGCGATGCTCATCAGGCCACGATGCGGGGCTGCGGACGCAC
ATCCTGGTGTGCCTGGGCGCATCGCTGTTCACGCTCTCGGGTGCCGTCTC
CAAGAACACCAACGTGGACGAGACGCGCATTGCAGCGCAGGTGGTCAGCG
GCATAGGCTTCCTAGGCGCAGGTGCCATCGTGCGTGAGGGCCTCTGGGTG
CGCGGCCTGACAACGGCCGCCGCGCTGTGGGTGACAGCCGCCATGGGCGT
CGCACTGGGCCTCGGCGCCTATGCATCAGCGGGCCTAACCATGGCGCTTG
TCATGGTCACCCTGGCGGGCCTCCAGCAGCTCGAAGACCGCGTCTTCTAC
ACGTGGCGCCGCCGCATCGTCATGCTGGACCTCGTCCCTAACCAGCCGCC
GAGCGCCGTAGTGGTACCCGCGCTCAAAGCACTGGGCTCCGCGCACGTGT
CGGCAGTAACGGCGCTAGCCAATGGCGCGAAGCGGCTGCGCATCTCGTCG
CGGCTGCGCCTGAATGAAAACCTGCCGCTGCTCGCCGAGACGCTCATGGG
GATAGAGGGGGTCGCGGGCGTCGAGATCCTGCACGCGTAG
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