mRNA_11011 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|95819 vs. uniprot
Match: A0A835YL18_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL18_9STRA) HSP 1 Score: 436 bits (1122), Expect = 4.540e-153 Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1
Query: 127 MRAHAGRDVYVMGDSYGGLVAAGVALTLQEEQQLKGVILSNPATSFPSTFFARWGATLCRLPGPLFSAFSGVLALLTLDKVVLRNMVSVARGDRRWPEDRITAIDAPKLNVWLDAMMGNMEPLDSRTLLFRIQNLLGTGSEWVNPRLSTLTVPALVVCGTRDRLLPSKREADRLEQLLAPNVMVHRVAGAGHMGTLDFRCNLGELVAEWRHRFGLV 774
MRAHAGRDVYVMGDSYGGLVAAGVALTLQEEQQLKGVILSNPATSFPSTFFARWGATLCRLPGPLFSAFSGVLALLTLDKVVLRNMVSVARGDRRWPEDRITAIDAPKLNVWLDAMMGNMEPLDSRTLLFRIQNLLGTGSEWVNPRLSTLTVPALVVCGTRDRLLPSKREADRLEQLLAPNVMVHRVAGAGHMGTLDFRCNLGELVAEWRHRFGLV
Sbjct: 1 MRAHAGRDVYVMGDSYGGLVAAGVALTLQEEQQLKGVILSNPATSFPSTFFARWGATLCRLPGPLFSAFSGVLALLTLDKVVLRNMVSVARGDRRWPEDRITAIDAPKLNVWLDAMMGNMEPLDSRTLLFRIQNLLGTGSEWVNPRLSTLTVPALVVCGTRDRLLPSKREADRLEQLLAPNVMVHRVAGAGHMGTLDFRCNLGELVAEWRHRFGLV 216
BLAST of jgi.p|Trimin1|95819 vs. uniprot
Match: A0A4D9DBR5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBR5_9STRA) HSP 1 Score: 122 bits (306), Expect = 3.430e-27 Identity = 83/242 (34.30%), Postives = 124/242 (51.24%), Query Frame = 1
Query: 115 LREWMRAHAGRDVYVMGDSYGGLVAAGVALT------LQEEQQLKGVILSNPATSFPSTFFARWGATLCRLPGPLFSAFSGVLALLTLDKVVLRNMVSVA----RGDRRWPEDRITAIDAPK-------------------LNVWLDAMMGNMEPLDSRTLLFRIQNLLGTGSEWVNPRLSTLTVPALVVCGTRDRLLPSKREADRLEQLLAPNVMVHRVAGAGHMGTLDFRCNLGELVAEW 753
+R +R+ GR V+VMG+S+GGL+A G L +++ ++GV+L NPATSF T + + G + +LP P +S + LL +D ++ ++ A R P R + AP + L ++ + L + L +R+ LG GSE V P+L L P LVV GT DRLLPS EA RL++ +A + VH V GAGH G+LD R L E++ +W
Sbjct: 209 VRTEIRSFPGRHVFVMGESFGGLLALGTVLERTKRPDVRDTADIQGVVLVNPATSFSRTIWGKVGPLITKLPQPFYSLSLLPIGLLLVDGGQIKGLIKDAFVRLREAAPTPSGRAPSPPAPPPDQRARMAALGLSPFQIEFFSAALPVLIERLNLLPAPCLEWRLLQWLGLGSEMVEPQLHRLKTPVLVVAGTVDRLLPSFEEAKRLKKEVA-DCQVHYVRGAGHGGSLDQRVQLLEILRQW 449
BLAST of jgi.p|Trimin1|95819 vs. uniprot
Match: A0A7S1PDH8_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1PDH8_9ALVE) HSP 1 Score: 97.8 bits (242), Expect = 6.780e-19 Identity = 77/243 (31.69%), Postives = 121/243 (49.79%), Query Frame = 1
Query: 70 DRSDFHGQREAASAALREWMRAHAGRDVYVMGDSYGGLVAAGVALT------LQEEQQLKGVILSNPATSFPSTFFARWGATLCRLPGPLFSAFSGVLALLTLDKVVLRNMVSVARGDRRWPEDRITAIDAPK------LNVWLDAMMGNMEPLDSRTLLFRIQNLLGTGSEWVNPRLST------LTVPALVVCGTRDRLLPSKREADRLEQLLAPNVMVHRVAGAGHMGTLDFRCNLGELV 744
DRS F A +++ + + V ++GDS+GGL+A GVAL L+ ++ LKGV++ NPATS+ T + G L GPL++ + L T+ + R + A WP + P+ + W + +D TL FR++ L GSE V+ +L T +P ++V G+ D +LPS+REA RL +L+ + V VAG+GH LD R NL +++
Sbjct: 191 DRSTFSELEGAVVTFIKQLKQQQPHKQVVLVGDSFGGLLALGVALRCATDPLLRPQRLLKGVLVVNPATSYLYTAWPLLGPIATALDGPLYTLMGSLALLSTVPDPIQRASIREAF----WPSS-VPITQRPRELVKQVQSTWA-GFSRLADRIDPDTLRFRLEKWLLDGSERVSIKLQTKRDKYPYDLPTVIVAGSEDAMLPSEREAKRLAKLMPDSEQV-LVAGSGHY-VLDNRTNLTDIL 425
BLAST of jgi.p|Trimin1|95819 vs. uniprot
Match: A0A0G4GL11_VITBC (AB hydrolase-1 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GL11_VITBC) HSP 1 Score: 97.8 bits (242), Expect = 8.040e-19 Identity = 77/243 (31.69%), Postives = 121/243 (49.79%), Query Frame = 1
Query: 70 DRSDFHGQREAASAALREWMRAHAGRDVYVMGDSYGGLVAAGVALT------LQEEQQLKGVILSNPATSFPSTFFARWGATLCRLPGPLFSAFSGVLALLTLDKVVLRNMVSVARGDRRWPEDRITAIDAPK------LNVWLDAMMGNMEPLDSRTLLFRIQNLLGTGSEWVNPRLST------LTVPALVVCGTRDRLLPSKREADRLEQLLAPNVMVHRVAGAGHMGTLDFRCNLGELV 744
DRS F A +++ + + V ++GDS+GGL+A GVAL L+ ++ LKGV++ NPATS+ T + G L GPL++ + L T+ + R + A WP + P+ + W + +D TL FR++ L GSE V+ +L T +P ++V G+ D +LPS+REA RL +L+ + V VAG+GH LD R NL +++
Sbjct: 206 DRSTFSELEGAVVTFIKQLKQQQPHKQVVLVGDSFGGLLALGVALRCATDPLLRPQRLLKGVLVVNPATSYLYTAWPLLGPIATALDGPLYTLMGSLALLSTVPDPIQRASIREAF----WPSS-VPITQRPRELVKQVQSTWA-GFSRLADRIDPDTLRFRLEKWLLDGSERVSIKLQTKRDKYPYDLPTVIVAGSEDAMLPSEREAKRLAKLMPDSEQV-LVAGSGHY-VLDNRTNLTDIL 440
BLAST of jgi.p|Trimin1|95819 vs. uniprot
Match: A0A7S4HRM0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HRM0_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 4.520e-18 Identity = 80/265 (30.19%), Postives = 125/265 (47.17%), Query Frame = 1
Query: 58 LSAADRSDFHGQREAASAALREWMRAHAGRDVYVMGDSYGGLVAAGVALTLQEE------------QQLKGVILSNPATSFPSTFFARWGATLCRL-----------------PGPLFSAFSGV-LALLTLDKVVLRNMVSVARGDRRWPEDRITAIDAPKLNVWLDAMMGNMEPLDSRT----LLFRIQNLLGTGSEWVNPRLSTLTVPALVVCGTRDRLLPSKREADRLEQLLAPNVMVHRVAGAGHMGTLDFRCNLGELVAE 750
+S D++ F G +A S + + RDV ++G+S+GGL+A VA+ + E +KG++L NPATSF T ++ + L +L P P +S G+ LA D + +VS+ + + +T + L+ M+ LD + + R+ L GS+ VNPRLS+L VP LV+ G D +LP+K+EADRL ++ PN + G+GH LD R NL + E
Sbjct: 129 VSTDDKTSFTGLVDAVSKFIND-AAVMFDRDVVLIGESFGGLLAPAVAIRARSEYFRAHNGEEHLLDPIKGLVLVNPATSFEDTNWSTFAPLLAQLKHLKDDSGQNSNLPFGLPTP-YSVVGGLALAASIPDSNQFQRIVSLITDTKVRSVEELTDV--------LENMVAGFGILDDQLPADIVEHRVGQWLPVGSKVVNPRLSSLNVPTLVIAGQEDNMLPTKKEADRLVNIM-PNCTKMEIEGSGHF-VLDERVNLTNAIIE 381
BLAST of jgi.p|Trimin1|95819 vs. uniprot
Match: A0A1Z5JJ80_FISSO (AB hydrolase-1 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJ80_FISSO) HSP 1 Score: 92.8 bits (229), Expect = 1.270e-17 Identity = 79/245 (32.24%), Postives = 122/245 (49.80%), Query Frame = 1
Query: 58 LSAADRSDFHGQREAASAALR-EWMRAHAGRDVYVMGDSYGGLVAAGVALTLQEEQQL----KGVILSNPATSFPSTFFARWGATLCRLPGPLFSAFSGVLALLTL--DKVVLRNMVSVARGDRRWPEDRITAIDAPKLNVWLDAMMGNME----PLDSRTLLFRIQNLLGTGSEWVNPRLSTLT-----VPALVVCGTRDRLLPSKREADRLEQLLAPNVMVHRVAGAGHMGTLDFRCNLGELV 744
+S +DRS F E ++ E M R VY+MG+S+GGL+A VAL + + QL KG++L NPATS+ + AR G + +LP + A G+L LL L D+ + ++ + + + ID P ++ + ++ + TL +R+ L TG ++ RL TL+ + L+V G RD LPS EA RL+++L PN V V AGH T R +L +
Sbjct: 81 ISTSDRSSFAQLTECVVRYIQQETMTTQ--RPVYLMGESFGGLLACNVALQIADGNQLLDLLKGLVLINPATSYDRSRLAREGPPVAQLPWWNYPA--GLLQLLPLFTDEHSFQQLLLILTA-----QALPSVIDNPMREAYMGRVAFSLPFVIPTVTPSTLDWRLHAWLKTGCHYIATRLKTLSNVHPNLRTLIVIGERDETLPSSEEAIRLKEIL-PNSRVRMVPDAGHASTCGSRADLSAYM 315
BLAST of jgi.p|Trimin1|95819 vs. uniprot
Match: F0YM12_AURAN (AB hydrolase-1 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YM12_AURAN) HSP 1 Score: 90.9 bits (224), Expect = 3.120e-17 Identity = 73/230 (31.74%), Postives = 112/230 (48.70%), Query Frame = 1
Query: 76 SDFHGQREAASAALREWMRAHAGRDVYVMGDSYGGLVAAGVALTLQEEQQLKGVILSNPATSFPSTFFARWGATLCRLPGPLFSAFS-GVLALLTLDKVVLRNMVSVARGDRRWPEDRITAIDAPKLNVWLDAMMGN-MEPLDSRTLLFRIQ-NLLGTGSEWVNPRLSTLTVPALVVCGTRDRLLPSKREADRLEQLLAPNVMVHRVAGAGHMGTLDFRCNLGELVAEWR 756
SD+ G +A +A +R + RDVYV G+SYGG A V + + KGV+ NPATSF + + + F+ S +LA D R ++S + R P L + + ++ +E ++ F + LG G+ + L++L P LVV G DRL+ S EA R+ ++ + +H V GAGH GTLD RC+L E++A+WR
Sbjct: 93 SDWRGSVDAVAAFVRHESKT---RDVYVCGESYGGCQALAVGIAAKP----KGVVAVNPATSFGRSDLTELAERMKTMSNLEFAITSITLLATRVGDPTQTRTILSTLWDNPMKDPKRCP----PALAAYFERVLPPFVEGFNAPRPFFEARLAALGIGAAELENTLASLDAPLLVVAGDVDRLVGSAEEAPRIASVVR-DTTIHVVHGAGHSGTLDQRCDLREVMADWR 310
BLAST of jgi.p|Trimin1|95819 vs. uniprot
Match: A0A7J7PJK5_9CHLO (Alpha/beta-hydrolase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PJK5_9CHLO) HSP 1 Score: 87.8 bits (216), Expect = 1.820e-15 Identity = 76/236 (32.20%), Postives = 117/236 (49.58%), Query Frame = 1
Query: 55 LLSAADRSDFHGQREAASAALR---EWMRAHAGRDVYVMGDSYGGLVAAGVALTLQEEQQLKGVILSNPATSFPSTFFARWGATLCRLPGPLFSAFSGVLALLTLDKVVLRNMVSVARGD--RRWPEDRITAIDAPKLNVWLDAMMGNME-PLDSRTLLFRIQNLLGTGSEWVNPRLSTLTVPALVVCGTRDRLLPSKREADRLEQLLAPNVMVHRVAGAGHMGTLDFRCNLGELV 744
++ DRS F + +A +R EW + GR VY+MG+S+GG++ +A L + + V+L NPA+SF +T + GA L +LP ++ LA V+ N +S+A D R P + A D + L +G + L TL +R+Q LL GS W+ PRL + LV+ G +D L+PSK EA RL + L P +A H + +L +L+
Sbjct: 196 IIPRTDRSSFEELADTVAAMIRKELEW--SDGGRPVYLMGESFGGILCLALAHKLGDA--VDRVVLVNPASSFTNTPWPALGALLTQLPADVYKLLPFALA------PVMSNPISMALNDVDSRAPLPQ-QASDLLYGLIDLAPQLGALRLVLPPETLAWRLQ-LLQQGSTWITPRLKDIQQRVLVLAGEQDLLIPSKDEAQRLGKAL-PRARTKVLANRSHALLQEAGVDLFQLL 418
BLAST of jgi.p|Trimin1|95819 vs. uniprot
Match: A0A7S1BH14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BH14_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.810e-14 Identity = 83/244 (34.02%), Postives = 124/244 (50.82%), Query Frame = 1
Query: 70 DRSDFHGQREAASAALREWMRAHAGRDVYVMGDSYGGLVAAGVALTLQEEQQLKGVILSNPATSFPSTFFARWG---ATLCRLPG----PLFSAFSGVLALLTL--DKVVLRNMVSVARGDRRWPEDRITAIDAPKLNV---W---LDAMMGNMEPLDSRTLLFRIQNLLGTGSEWVNPRLSTLTVPALVVCGTRDRLLPSKREADRLEQLLAPNVMVHRVAGAGHMGTLDFRCNLGELVAEWR 756
DRS F E A L E++ R+V ++G+S+GGL+A VAL + +++ ++L NPATSF +T + WG A+L LPG P + +G L L L D V +R + + D IT A L+ W D E L + T+ +R + L G+ VNPRL + P LV+ G +DR LPS++EA RL +++ P+ + G GH LD R N+ L+ + R
Sbjct: 111 DRSTFS---ELTDAVL-EFLTDEDLREVTLIGESFGGLLAPAVALRASD--RIRALVLVNPATSFDATNWDVWGPALASLRNLPGADGLPTPYSVAGGLTLSALIPDGVQVRRIAGLLFPD-------ITGAAATMLDAEGSWRAMTDGFGILEERLPAATVDWRTRRWLPPGTAAVNPRLDRIQTPTLVLAGKQDRFLPSRKEAARLCRVM-PDCTKMELDG-GHF-LLDDRVNVTALLVDSR 338
BLAST of jgi.p|Trimin1|95819 vs. uniprot
Match: B8C3N4_THAPS (AB hydrolase-1 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3N4_THAPS) HSP 1 Score: 81.3 bits (199), Expect = 6.740e-14 Identity = 77/257 (29.96%), Postives = 120/257 (46.69%), Query Frame = 1
Query: 70 DRSDFHGQREAASAALREWMRAHAGRDVYVMGDSYGGLVAAGVALTLQEEQ----QLKGVILSNPATSFPSTFFARWGATLCR---LPGPLFSAFSGVLALLTLDKVVLRNMVSVARGDRRWPEDRITAIDAPKL-----NVWLDAMMGN--------MEPLDSRTLLFRIQNLLGTGSEWVNPRLST------LTVPALVVCGTRDRLLPSKREADRLEQLLAPNVMVHRVAGAGHMGTLDFRCNLGELVAEWRHR 762
DR+ F G + S L + GRDVY+MG+S+GG++A V+L L + QL+G+IL NPATS+ + + G + LP PL S + +L T +V + + R + IT + + L N +A MG ++ + TL +R++ L TG+E RL + L+V G +D LPS EA+RL + +V V V AGH T NL +++ ++ R
Sbjct: 7 DRTTFDGLK---SQVLEYVVDECHGRDVYLMGESFGGILATEVSLALLSSKEYSIQLRGLILVNPATSYLRSTLYKLGPPVANNDSLPFPL-SFLQYIYSLTT-------QLVPLFLDEGRAFQQLITILSSKGLPAVVNNSQREAYMGRIAFDLANRLKFMPQETLKWRLEEWLATGNELFEDRLKKGELKELYQLKTLIVVGEKDLTLPSVEEAERLSTKVFNDVRVKVVKDAGHASTNGGSLNLIQVIRDFYPR 252 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|95819 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11011 ID=mRNA_11011|Name=jgi.p|Trimin1|95819|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=968bp|location=Sequence derived from alignment at Contig_88:20669..28132- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGTACTTGCTGGAAGTATGAATACCTCGAGTAACTTACCTGTGAATTACback to top protein sequence of jgi.p|Trimin1|95819 >Trimin1|95819|CE95818_23 ID=Trimin1|95819|CE95818_23|Name=jgi.p|Trimin1|95819|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=217bp MRAHAGRDVYVMGDSYGGLVAAGVALTLQEEQQLKGVILSNPATSFPSTFback to top mRNA from alignment at Contig_88:20669..28132- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11011 ID=mRNA_11011|Name=jgi.p|Trimin1|95819|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7464bp|location=Sequence derived from alignment at Contig_88:20669..28132- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_88:20669..28132- >mRNA_11011 ID=mRNA_11011|Name=jgi.p|Trimin1|95819|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=651bp|location=Sequence derived from alignment at Contig_88:20669..28132- (Tribonema minus UTEX_B_3156 )back to top |