mRNA_11004 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|148672
Unique NamemRNA_11004
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: A0A835YKP3_9STRA (Ubiquitin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKP3_9STRA)

HSP 1 Score: 327 bits (838), Expect = 1.040e-113
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1
Query:    1 ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGSTLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAKKD 456
            ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGSTLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAKKD
Sbjct:    1 ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGSTLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAKKD 152          
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: A0A836C8N2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N2_9STRA)

HSP 1 Score: 164 bits (415), Expect = 3.420e-47
Identity = 81/154 (52.60%), Postives = 100/154 (64.94%), Query Frame = 1
Query:    1 ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGSTLDLFPASDGGCGR--MALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAKKD 456
            + +A+E + G P D Q+L + G RL    TL DFGI +GST+ +  +  GG     + +PFADVSRS A++ +    DAPDWR ACEGLNMEGYCR   C ARN +VI  +GM AFTLGS+C CP C   G+   P TCG  AC WMYEGAK D
Sbjct:   61 LEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIGSGSTVHMVLSLCGGRSMPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTLGSQCACPEC---GADVTPVTCGFYACTWMYEGAKTD 211          
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: A0A835YTW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW7_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.160e-31
Identity = 65/151 (43.05%), Postives = 85/151 (56.29%), Query Frame = 1
Query:   13 VEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIE-----NGSTLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAK 450
            + D  G P D QRL++ G  L    T++D+G++        ++ +     GG    +  FADV+ + AI  +  + +AP WRVAC GLN+EG C   GC AR  MVIH VGM AFTLG  C CPLC      F P TC  +AC WM+EG K
Sbjct:  168 IHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCR---RPFAPVTCAFLACAWMFEGVK 315          
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: A0A835YSA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA3_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.750e-30
Identity = 62/158 (39.24%), Postives = 81/158 (51.27%), Query Frame = 1
Query:    1 ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGS------TLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAKKD 456
            +   ++   G P + QRL++ G  L    +L    +  G       TL L P   GG       FADV+ +  I  I  +  AP+WR+ACEGLN+EG C  A C A   MVIH++GM AF LG  C CPLC    +   P TC    C+WM+EG K D
Sbjct:    9 VKQTIQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDNIHPPTLQLIPRLRGGGSLSGGMFADVADANGISRIAFSETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCV---APIVPLTCAFHRCVWMFEGVKAD 163          
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: A0A835ZBV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBV8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 5.540e-30
Identity = 65/151 (43.05%), Postives = 80/151 (52.98%), Query Frame = 1
Query:   13 VEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIEN-----GSTLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAK 450
            ++D  G P D QRL + G  L    T++D+ ++        TL L     GG       FADV+ + +I  +    DAP WRVAC GLN EG C    C AR  MVIH+VGM AFTLG  C CPLC      F P TC    C+WM+EG K
Sbjct:    2 IQDAEGIPLDQQRLCWHGTALEGCRTVSDYNMKFCPELCEPTLQLVLMLRGGGCVTGGRFADVADASSISRMAFDDDAPKWRVACPGLNAEGVCSTTWCRARGEMVIHEVGMGAFTLGDACACPLCR---RPFTPVTCAFHDCVWMFEGVK 149          
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: A0A835Z319_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z319_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.600e-29
Identity = 70/154 (45.45%), Postives = 83/154 (53.90%), Query Frame = 1
Query:   16 EDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIE-----NGSTLDL-FPASDGGC---GRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAK 450
            +D    P D QRL + G  L    T++D+G++        TL L      GGC   GR    FADV+   AI H+  + +AP WRVAC GLN+EG C   GC AR  MVI  VGM AFTLG  C CPLC      F P TC   AC WM+EG K
Sbjct:  194 QDAQSIPPDQQRLRWRGKMLEDSRTVSDYGMKFCPQLREPTLQLELRLRGGGCVTGGR----FADVADLNAISHMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGKMVIRGVGMGAFTLGDACACPLCR---RPFAPVTCAFHACAWMFEGVK 340          
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: A0A836CBY2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBY2_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.260e-28
Identity = 61/152 (40.13%), Postives = 81/152 (53.29%), Query Frame = 1
Query:   13 VEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENG----STLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAKKD 456
            + D  G P + QRL++ G +L    +L+++ I+        L L     GG       FADV+ +  I  I  +   P WR+ACEGLN+EG C  A C A   MVIH++GM AFTLG  C CPLC    +   P TC    C+WM+EG K D
Sbjct:   20 ITDLEGIPPEQQRLIWCGKQLEDRRSLSEYHIDPDINDLPALHLVLRMRGG----GPTFADVADANGISRIAFSDTGPKWRIACEGLNIEGLCTNAECAAHGKMVIHKIGMGAFTLGGACACPLCD---APIVPLTCAFHRCVWMFEGVKAD 164          
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: A0A225VBF3_9STRA (Ubiquitin family protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VBF3_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.750e-24
Identity = 61/151 (40.40%), Postives = 76/151 (50.33%), Query Frame = 1
Query:    1 ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGSTLDLFPASDGG-CGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAK 450
            +   VE +YG   + Q L Y G +L    TLT + + N  TL L     GG  G ++  FADVS    I  I  + DAP+WR+ CEGLN+EG CR   C A   MVI       F L  R +   C +C    +P TCGL  C W YEG K
Sbjct:   65 VKSRVEKKYGISTNDQCLTYGGKQLRDHFTLTTYNVNNMKTLLLSTKMLGGFSGPVSRTFADVSDGSLITRINFSDDAPEWRLCCEGLNIEGRCRNRMCRAYRKMVIATKDFEMFNL-IRDDNVRCPMCQHKVKPLTCGLHDCSWRYEGVK 214          
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: Q22T79_TETTS (Ubiquitin n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q22T79_TETTS)

HSP 1 Score: 98.6 bits (244), Expect = 4.080e-21
Identity = 54/154 (35.06%), Postives = 84/154 (54.55%), Query Frame = 1
Query:    1 ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGSTLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTL----GSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAK 450
            I + + D  G P D QRL++ G  L    TL+D+ I+NGST+ L     GG    A  F D+   ++ K I+ +A AP +RVAC+G+N+EGYC+   CP  + +VI +VG  +  +     +  +CP    C ++ +  TCG   C + + G K
Sbjct:  309 IKNKIYDIEGIPPDQQRLIFPGKILENGYTLSDYNIQNGSTIHLVLCQRGGV--TAKKFVDIQNEKSKKVIEFSAYAPVYRVACDGINIEGYCKNEKCPYYDKLVISKVGYKSIEVIKDEYNEIKCPY-YYCQNSIELVTCGFSNCKYKWSGIK 459          
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: G4ZCB9_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZCB9_PHYSP)

HSP 1 Score: 95.9 bits (237), Expect = 1.300e-20
Identity = 55/152 (36.18%), Postives = 74/152 (48.68%), Query Frame = 1
Query:    1 ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGSTLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTL--GSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAK 450
            I   ++DQ G P D QRL++   +L     L+D+GI+NGS L L     GG      P             +  A+APDWR+  +GLN+EG C+   C A   +VIH      F L      +CP+C   GS  +P TCG   C W +EG K
Sbjct:  131 IKQRIQDQKGIPPDQQRLIFAARQLDDGRKLSDYGIQNGSVLHLVLRLRGG---YVAP-------------RCFANAPDWRICRDGLNIEGRCKNRACVAYKQLVIHPADFQVFNLMKDGGVKCPMC---GSKVKPLTCGFYDCAWKFEGVK 263          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKP3_9STRA1.040e-113100.00Ubiquitin-like domain-containing protein (Fragment... [more]
A0A836C8N2_9STRA3.420e-4752.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTW7_9STRA1.160e-3143.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YSA3_9STRA1.750e-3039.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZBV8_9STRA5.540e-3043.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z319_9STRA1.600e-2945.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CBY2_9STRA1.260e-2840.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A225VBF3_9STRA5.750e-2440.40Ubiquitin family protein n=1 Tax=Phytophthora mega... [more]
Q22T79_TETTS4.080e-2135.06Ubiquitin n=1 Tax=Tetrahymena thermophila (strain ... [more]
G4ZCB9_PHYSP1.300e-2036.18Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_82contigContig_82:619563..620018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|148672|gw1.82.60.1
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029,ko04121,ko04131,ko04147
KEGG ModuleM00177,M00179
KEGG Pathwayko03010,ko03320,ko04139,ko04214,ko04217,ko04621,ko04668,map03010,map03320,map04139,map04214,map04217,map04621,map04668
KEGG koko:K02927,ko:K02977,ko:K08770,ko:K17065
EC3.6.5.5
DescriptionUbiquitin homologues
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1552@1|root,KOG0003@2759|Eukaryota,3QJ68@4776|Peronosporales
Evalue1.1e-25
Seed ortholog67593.Physo140234
Hectar predicted targeting categoryother localisation
TranscriptId148994
TrackFilteredModels1
ProteinId148672
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148672gene_11004Tribonema minus UTEX_B_3156 geneContig_82 619563..620018 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11004_1exon_11004_1Tribonema minus UTEX_B_3156 exonContig_82 619563..620018 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11004CDS_11004Tribonema minus UTEX_B_3156 CDSContig_82 619563..620018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148672Trimin1|148672|gw1.82.60.1Tribonema minus UTEX_B_3156 polypeptideContig_82 619563..620018 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11004 ID=mRNA_11004|Name=jgi.p|Trimin1|148672|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=456bp|location=Sequence derived from alignment at Contig_82:619563..620018- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCACAGATGCCGTCGAGGACCAGTACGGCACACCACGCGATCTACAGAG
GCTTCTTTATGATGGCAACAGGCTGCATAGAGACTGCACTCTCACTGACT
TTGGAATTGAAAATGGGAGCACTTTGGACTTGTTTCCCGCGAGCGATGGA
GGCTGCGGCAGGATGGCACTACCTTTCGCTGACGTGTCCCGCAGCAGAGC
CATCAAGCACATCCAGTTGACCGCAGACGCGCCCGACTGGCGTGTTGCGT
GCGAGGGGCTCAACATGGAGGGCTACTGCCGCAAGGCAGGGTGTCCAGCG
CGCAACTCCATGGTCATCCACCAGGTGGGCATGGCCGCGTTCACACTCGG
ATCGCGCTGCGAATGTCCGCTGTGTTCGCTGTGCGGGAGTGCCTTCCAGC
CTCGCACCTGCGGGCTCATGGCGTGCCTCTGGATGTACGAGGGTGCCAAA
AAAGAT
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protein sequence of jgi.p|Trimin1|148672

>Trimin1|148672|gw1.82.60.1 ID=Trimin1|148672|gw1.82.60.1|Name=jgi.p|Trimin1|148672|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=152bp
ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGSTLDLFPASDG
GCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPA
RNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAK
KD
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mRNA from alignment at Contig_82:619563..620018-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11004 ID=mRNA_11004|Name=jgi.p|Trimin1|148672|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=456bp|location=Sequence derived from alignment at Contig_82:619563..620018- (Tribonema minus UTEX_B_3156 )
ATCACAGATGCCGTCGAGGACCAGTACGGCACACCACGCGATCTACAGAG GCTTCTTTATGATGGCAACAGGCTGCATAGAGACTGCACTCTCACTGACT TTGGAATTGAAAATGGGAGCACTTTGGACTTGTTTCCCGCGAGCGATGGA GGCTGCGGCAGGATGGCACTACCTTTCGCTGACGTGTCCCGCAGCAGAGC CATCAAGCACATCCAGTTGACCGCAGACGCGCCCGACTGGCGTGTTGCGT GCGAGGGGCTCAACATGGAGGGCTACTGCCGCAAGGCAGGGTGTCCAGCG CGCAACTCCATGGTCATCCACCAGGTGGGCATGGCCGCGTTCACACTCGG ATCGCGCTGCGAATGTCCGCTGTGTTCGCTGTGCGGGAGTGCCTTCCAGC CTCGCACCTGCGGGCTCATGGCGTGCCTCTGGATGTACGAGGGTGCCAAA AAAGAT
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Coding sequence (CDS) from alignment at Contig_82:619563..620018-

>mRNA_11004 ID=mRNA_11004|Name=jgi.p|Trimin1|148672|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=456bp|location=Sequence derived from alignment at Contig_82:619563..620018- (Tribonema minus UTEX_B_3156 )
ATCACAGATGCCGTCGAGGACCAGTACGGCACACCACGCGATCTACAGAG
GCTTCTTTATGATGGCAACAGGCTGCATAGAGACTGCACTCTCACTGACT
TTGGAATTGAAAATGGGAGCACTTTGGACTTGTTTCCCGCGAGCGATGGA
GGCTGCGGCAGGATGGCACTACCTTTCGCTGACGTGTCCCGCAGCAGAGC
CATCAAGCACATCCAGTTGACCGCAGACGCGCCCGACTGGCGTGTTGCGT
GCGAGGGGCTCAACATGGAGGGCTACTGCCGCAAGGCAGGGTGTCCAGCG
CGCAACTCCATGGTCATCCACCAGGTGGGCATGGCCGCGTTCACACTCGG
ATCGCGCTGCGAATGTCCGCTGTGTTCGCTGTGCGGGAGTGCCTTCCAGC
CTCGCACCTGCGGGCTCATGGCGTGCCTCTGGATGTACGAGGGTGCCAAA
AAAGAT
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