mRNA_11004 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: A0A835YKP3_9STRA (Ubiquitin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKP3_9STRA) HSP 1 Score: 327 bits (838), Expect = 1.040e-113 Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 Query: 1 ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGSTLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAKKD 456 ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGSTLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAKKD Sbjct: 1 ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGSTLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAKKD 152
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: A0A836C8N2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N2_9STRA) HSP 1 Score: 164 bits (415), Expect = 3.420e-47 Identity = 81/154 (52.60%), Postives = 100/154 (64.94%), Query Frame = 1 Query: 1 ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGSTLDLFPASDGGCGR--MALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAKKD 456 + +A+E + G P D Q+L + G RL TL DFGI +GST+ + + GG + +PFADVSRS A++ + DAPDWR ACEGLNMEGYCR C ARN +VI +GM AFTLGS+C CP C G+ P TCG AC WMYEGAK D Sbjct: 61 LEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIGSGSTVHMVLSLCGGRSMPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTLGSQCACPEC---GADVTPVTCGFYACTWMYEGAKTD 211
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: A0A835YTW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW7_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.160e-31 Identity = 65/151 (43.05%), Postives = 85/151 (56.29%), Query Frame = 1 Query: 13 VEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIE-----NGSTLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAK 450 + D G P D QRL++ G L T++D+G++ ++ + GG + FADV+ + AI + + +AP WRVAC GLN+EG C GC AR MVIH VGM AFTLG C CPLC F P TC +AC WM+EG K Sbjct: 168 IHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCR---RPFAPVTCAFLACAWMFEGVK 315
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: A0A835YSA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA3_9STRA) HSP 1 Score: 120 bits (301), Expect = 1.750e-30 Identity = 62/158 (39.24%), Postives = 81/158 (51.27%), Query Frame = 1 Query: 1 ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGS------TLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAKKD 456 + ++ G P + QRL++ G L +L + G TL L P GG FADV+ + I I + AP+WR+ACEGLN+EG C A C A MVIH++GM AF LG C CPLC + P TC C+WM+EG K D Sbjct: 9 VKQTIQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDNIHPPTLQLIPRLRGGGSLSGGMFADVADANGISRIAFSETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCV---APIVPLTCAFHRCVWMFEGVKAD 163
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: A0A835ZBV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBV8_9STRA) HSP 1 Score: 119 bits (297), Expect = 5.540e-30 Identity = 65/151 (43.05%), Postives = 80/151 (52.98%), Query Frame = 1 Query: 13 VEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIEN-----GSTLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAK 450 ++D G P D QRL + G L T++D+ ++ TL L GG FADV+ + +I + DAP WRVAC GLN EG C C AR MVIH+VGM AFTLG C CPLC F P TC C+WM+EG K Sbjct: 2 IQDAEGIPLDQQRLCWHGTALEGCRTVSDYNMKFCPELCEPTLQLVLMLRGGGCVTGGRFADVADASSISRMAFDDDAPKWRVACPGLNAEGVCSTTWCRARGEMVIHEVGMGAFTLGDACACPLCR---RPFTPVTCAFHDCVWMFEGVK 149
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: A0A835Z319_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z319_9STRA) HSP 1 Score: 121 bits (303), Expect = 1.600e-29 Identity = 70/154 (45.45%), Postives = 83/154 (53.90%), Query Frame = 1 Query: 16 EDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIE-----NGSTLDL-FPASDGGC---GRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAK 450 +D P D QRL + G L T++D+G++ TL L GGC GR FADV+ AI H+ + +AP WRVAC GLN+EG C GC AR MVI VGM AFTLG C CPLC F P TC AC WM+EG K Sbjct: 194 QDAQSIPPDQQRLRWRGKMLEDSRTVSDYGMKFCPQLREPTLQLELRLRGGGCVTGGR----FADVADLNAISHMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGKMVIRGVGMGAFTLGDACACPLCR---RPFAPVTCAFHACAWMFEGVK 340
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: A0A836CBY2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBY2_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.260e-28 Identity = 61/152 (40.13%), Postives = 81/152 (53.29%), Query Frame = 1 Query: 13 VEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENG----STLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAKKD 456 + D G P + QRL++ G +L +L+++ I+ L L GG FADV+ + I I + P WR+ACEGLN+EG C A C A MVIH++GM AFTLG C CPLC + P TC C+WM+EG K D Sbjct: 20 ITDLEGIPPEQQRLIWCGKQLEDRRSLSEYHIDPDINDLPALHLVLRMRGG----GPTFADVADANGISRIAFSDTGPKWRIACEGLNIEGLCTNAECAAHGKMVIHKIGMGAFTLGGACACPLCD---APIVPLTCAFHRCVWMFEGVKAD 164
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: A0A225VBF3_9STRA (Ubiquitin family protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VBF3_9STRA) HSP 1 Score: 104 bits (259), Expect = 5.750e-24 Identity = 61/151 (40.40%), Postives = 76/151 (50.33%), Query Frame = 1 Query: 1 ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGSTLDLFPASDGG-CGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTLGSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAK 450 + VE +YG + Q L Y G +L TLT + + N TL L GG G ++ FADVS I I + DAP+WR+ CEGLN+EG CR C A MVI F L R + C +C +P TCGL C W YEG K Sbjct: 65 VKSRVEKKYGISTNDQCLTYGGKQLRDHFTLTTYNVNNMKTLLLSTKMLGGFSGPVSRTFADVSDGSLITRINFSDDAPEWRLCCEGLNIEGRCRNRMCRAYRKMVIATKDFEMFNL-IRDDNVRCPMCQHKVKPLTCGLHDCSWRYEGVK 214
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: Q22T79_TETTS (Ubiquitin n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q22T79_TETTS) HSP 1 Score: 98.6 bits (244), Expect = 4.080e-21 Identity = 54/154 (35.06%), Postives = 84/154 (54.55%), Query Frame = 1 Query: 1 ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGSTLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTL----GSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAK 450 I + + D G P D QRL++ G L TL+D+ I+NGST+ L GG A F D+ ++ K I+ +A AP +RVAC+G+N+EGYC+ CP + +VI +VG + + + +CP C ++ + TCG C + + G K Sbjct: 309 IKNKIYDIEGIPPDQQRLIFPGKILENGYTLSDYNIQNGSTIHLVLCQRGGV--TAKKFVDIQNEKSKKVIEFSAYAPVYRVACDGINIEGYCKNEKCPYYDKLVISKVGYKSIEVIKDEYNEIKCPY-YYCQNSIELVTCGFSNCKYKWSGIK 459
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Match: G4ZCB9_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZCB9_PHYSP) HSP 1 Score: 95.9 bits (237), Expect = 1.300e-20 Identity = 55/152 (36.18%), Postives = 74/152 (48.68%), Query Frame = 1 Query: 1 ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGSTLDLFPASDGGCGRMALPFADVSRSRAIKHIQLTADAPDWRVACEGLNMEGYCRKAGCPARNSMVIHQVGMAAFTL--GSRCECPLCSLCGSAFQPRTCGLMACLWMYEGAK 450 I ++DQ G P D QRL++ +L L+D+GI+NGS L L GG P + A+APDWR+ +GLN+EG C+ C A +VIH F L +CP+C GS +P TCG C W +EG K Sbjct: 131 IKQRIQDQKGIPPDQQRLIFAARQLDDGRKLSDYGIQNGSVLHLVLRLRGG---YVAP-------------RCFANAPDWRICRDGLNIEGRCKNRACVAYKQLVIHPADFQVFNLMKDGGVKCPMC---GSKVKPLTCGFYDCAWKFEGVK 263 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148672 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11004 ID=mRNA_11004|Name=jgi.p|Trimin1|148672|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=456bp|location=Sequence derived from alignment at Contig_82:619563..620018- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATCACAGATGCCGTCGAGGACCAGTACGGCACACCACGCGATCTACAGAGback to top protein sequence of jgi.p|Trimin1|148672 >Trimin1|148672|gw1.82.60.1 ID=Trimin1|148672|gw1.82.60.1|Name=jgi.p|Trimin1|148672|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=152bp ITDAVEDQYGTPRDLQRLLYDGNRLHRDCTLTDFGIENGSTLDLFPASDGback to top mRNA from alignment at Contig_82:619563..620018- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11004 ID=mRNA_11004|Name=jgi.p|Trimin1|148672|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=456bp|location=Sequence derived from alignment at Contig_82:619563..620018- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_82:619563..620018- >mRNA_11004 ID=mRNA_11004|Name=jgi.p|Trimin1|148672|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=456bp|location=Sequence derived from alignment at Contig_82:619563..620018- (Tribonema minus UTEX_B_3156 )back to top |