mRNA_10952 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|147328
Unique NamemRNA_10952
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|147328 vs. uniprot
Match: A0A836C855_9STRA (C2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C855_9STRA)

HSP 1 Score: 291 bits (745), Expect = 8.730e-100
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 
Query:    1 KRALKPSYFSRNHFSSRATDDDDPTRAQTRLVVRILEGNGLLVADLLTGTSDPLCLAWVSSKGDDALPHLADPRLQRTPVCKLTVDPLWNSELVFPLRVTSVRDILAGAVHLVVLDEDTDDGTTHYEDLGALTIPLRDVVADGE 432
            KRALKPSYFSRNHFSSRATDDDDPTRAQTRLVVRILEGNGLLVADLLTGTSDPLCLAWVSSKGDDALPHLADPRLQRTPVCKLTVDPLWNSELVFPLRVTSVRDILAGAVHLVVLDEDTDDGTTHYEDLGALTIPLRDVVADGE
Sbjct:    1 KRALKPSYFSRNHFSSRATDDDDPTRAQTRLVVRILEGNGLLVADLLTGTSDPLCLAWVSSKGDDALPHLADPRLQRTPVCKLTVDPLWNSELVFPLRVTSVRDILAGAVHLVVLDEDTDDGTTHYEDLGALTIPLRDVVADGE 144
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147328 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C855_9STRA8.730e-100100.00C2 domain-containing protein (Fragment) n=1 Tax=Tr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_82contigContig_82:207259..207690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|147328|gw1.82.54.1
DescriptionC2 domain
COG categoryS
Max annot lvl35493|Streptophyta
EggNOG OGsKOG1030@1|root,KOG1030@2759|Eukaryota,37Z9E@33090|Viridiplantae,3GIX6@35493|Streptophyta,3M3C2@4447|Liliopsida,3IBA2@38820|Poales
Evalue8.15e-05
Seed ortholog4565.Traes_4BL_51CDE2F9F.2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-12_003510.1
TranscriptId147650
TrackFilteredModels1
ProteinId147328
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147328gene_10952Tribonema minus UTEX_B_3156 geneContig_82 207259..207690 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10952_1exon_10952_1Tribonema minus UTEX_B_3156 exonContig_82 207259..207690 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10952CDS_10952Tribonema minus UTEX_B_3156 CDSContig_82 207259..207690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147328Trimin1|147328|gw1.82.54.1Tribonema minus UTEX_B_3156 polypeptideContig_82 207259..207690 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10952 ID=mRNA_10952|Name=jgi.p|Trimin1|147328|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_82:207259..207690- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGCGCGCCCTCAAGCCCTCGTACTTCTCGAGGAACCATTTCAGCTCTAG
GGCTACAGATGACGATGATCCCACCAGGGCGCAGACGCGACTGGTCGTCA
GGATCCTCGAGGGCAACGGCCTGCTGGTAGCTGACTTGCTGACCGGCACC
AGCGATCCTCTCTGTCTCGCTTGGGTAAGCAGCAAGGGCGACGACGCATT
GCCGCATCTGGCTGATCCAAGACTGCAGAGGACTCCAGTGTGCAAGCTCA
CCGTGGATCCGCTGTGGAACAGCGAGCTGGTGTTTCCGCTGCGCGTCACC
TCCGTCAGGGACATTCTGGCGGGGGCCGTGCACCTGGTGGTGCTCGATGA
GGACACCGACGACGGCACCACGCACTACGAGGACCTAGGCGCGCTCACGA
TACCGCTGCGCGACGTGGTGGCGGACGGCGAG
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protein sequence of jgi.p|Trimin1|147328

>Trimin1|147328|gw1.82.54.1 ID=Trimin1|147328|gw1.82.54.1|Name=jgi.p|Trimin1|147328|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp
KRALKPSYFSRNHFSSRATDDDDPTRAQTRLVVRILEGNGLLVADLLTGT
SDPLCLAWVSSKGDDALPHLADPRLQRTPVCKLTVDPLWNSELVFPLRVT
SVRDILAGAVHLVVLDEDTDDGTTHYEDLGALTIPLRDVVADGE
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mRNA from alignment at Contig_82:207259..207690-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10952 ID=mRNA_10952|Name=jgi.p|Trimin1|147328|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_82:207259..207690- (Tribonema minus UTEX_B_3156 )
AAGCGCGCCCTCAAGCCCTCGTACTTCTCGAGGAACCATTTCAGCTCTAG
GGCTACAGATGACGATGATCCCACCAGGGCGCAGACGCGACTGGTCGTCA
GGATCCTCGAGGGCAACGGCCTGCTGGTAGCTGACTTGCTGACCGGCACC
AGCGATCCTCTCTGTCTCGCTTGGGTAAGCAGCAAGGGCGACGACGCATT
GCCGCATCTGGCTGATCCAAGACTGCAGAGGACTCCAGTGTGCAAGCTCA
CCGTGGATCCGCTGTGGAACAGCGAGCTGGTGTTTCCGCTGCGCGTCACC
TCCGTCAGGGACATTCTGGCGGGGGCCGTGCACCTGGTGGTGCTCGATGA
GGACACCGACGACGGCACCACGCACTACGAGGACCTAGGCGCGCTCACGA
TACCGCTGCGCGACGTGGTGGCGGACGGCGAG
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Coding sequence (CDS) from alignment at Contig_82:207259..207690-

>mRNA_10952 ID=mRNA_10952|Name=jgi.p|Trimin1|147328|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=432bp|location=Sequence derived from alignment at Contig_82:207259..207690- (Tribonema minus UTEX_B_3156 )
AAGCGCGCCCTCAAGCCCTCGTACTTCTCGAGGAACCATTTCAGCTCTAG
GGCTACAGATGACGATGATCCCACCAGGGCGCAGACGCGACTGGTCGTCA
GGATCCTCGAGGGCAACGGCCTGCTGGTAGCTGACTTGCTGACCGGCACC
AGCGATCCTCTCTGTCTCGCTTGGGTAAGCAGCAAGGGCGACGACGCATT
GCCGCATCTGGCTGATCCAAGACTGCAGAGGACTCCAGTGTGCAAGCTCA
CCGTGGATCCGCTGTGGAACAGCGAGCTGGTGTTTCCGCTGCGCGTCACC
TCCGTCAGGGACATTCTGGCGGGGGCCGTGCACCTGGTGGTGCTCGATGA
GGACACCGACGACGGCACCACGCACTACGAGGACCTAGGCGCGCTCACGA
TACCGCTGCGCGACGTGGTGGCGGACGGCGAG
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