mRNA_10948 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351161
Unique Name	mRNA_10948
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|351161 vs. uniprot
Match: A0A835YM95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM95_9STRA)

HSP 1 Score: 272 bits (696), Expect = 7.570e-90
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 3

Query:  129 MSPVRTPASEGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIXXLVSSIGGSAKQSSDQRRCRDLFNAKGLLFEELDGGAAHYRDLREFLWGLSKERTYPQIYLESGGEKYKHVGNWQTIQELLDTCDMPPEFLEQHPEIRTFDKVFAAVPKGKPTHNLSTVW 623
            MSPVRTPASEGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIXXLVSSIGGSAKQSSDQRRCRDLFNAKGLLFEELDGGAAHYRDLREFLWGLSKERTYPQIYLESGGEKYKHVGNWQTIQELLDTCDMPPEFLEQHPEIRTFDKVFAAVPKGKPTHNLSTVW
Sbjct:    1 MSPVRTPASEGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIXXLVSSIGGSAKQSSDQRRCRDLFNAKGLLFEELDGGAAHYRDLREFLWGLSKERTYPQIYLESGGEKYKHVGNWQTIQELLDTCDMPPEFLEQHPEIRTFDKVFAAVPKGKPTHNLSTVW 165

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BLAST of jgi.p|Trimin1|351161 vs. uniprot
Match: A0A835YRN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRN9_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.350e-44
Identity = 69/123 (56.10%), Postives = 92/123 (74.80%), Query Frame = 3

Query:  255 KIXXLVSSIGGSAKQSSDQRRCRDLFNAKGLLFEELDGGAAHYRDLREFLWGLSKERTYPQIYLESGGEKYKHVGNWQTIQELLDTCDMPPEFLEQHPEIRTFDKVFAAVPKGKPTHNLSTVW 623
            ++  LVSS GG+ +  ++QRRCRDLF+ +GL+FEELDG     RD R+FL+ LS  ++YPQ++LES G  +K+VG W  IQE+LD+CD+PPE L +HPEI+TFDKVF  VP   P+  LSTVW
Sbjct:   76 QVVILVSSYGGNPRHETEQRRCRDLFSGQGLVFEELDGANPENRDKRDFLFTLSNHKSYPQVFLESEGNIFKYVGTWPEIQEMLDSCDIPPEVLAKHPEIKTFDKVFGGVPTQAPSSTLSTVW 198

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BLAST of jgi.p|Trimin1|351161 vs. uniprot
Match: W7TU43_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU43_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 6.250e-22
Identity = 47/114 (41.23%), Postives = 66/114 (57.89%), Query Frame = 3

Query:  255 KIXXLVSSIGGSAKQSSDQRRCRDLFNAKGLLFEELDGGAAHYRDLREFLWGLSKERTYPQIYLESGGEKYKHVGNWQTIQELLDTCDMPPEFLEQHPEIRTFDKVFAAVPKGK 596
            K+  LVSS+   A Q  +QRR R L  AKG +FEE+DG      + R  L+GL     YPQ ++E    K  +VG W+ ++ + +  DMP E L  +P+I+TFD VFA V + K
Sbjct:    4 KVLLLVSSLTSDAVQEKEQRRARSLLEAKGTVFEEIDGADPLMTEKRNQLFGLGHTARYPQFFIEREDGKVTYVGGWEEVEAMNECSDMPVEVLRANPQIQTFDMVFAHVQRRK 117

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BLAST of jgi.p|Trimin1|351161 vs. uniprot
Match: A0A196SA63_BLAHN (Uncharacterized protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SA63_BLAHN)

HSP 1 Score: 67.4 bits (163), Expect = 1.270e-10
Identity = 29/85 (34.12%), Postives = 51/85 (60.00%), Query Frame = 3

Query:  333 NAKGLLFEELDGGAAHYRDLREFLWGLSK----ERTYPQIYLESGGEKYKHVGNWQTIQELLDTCDMPPEFLEQHPEIRTFDKVF 575
            N  G+ +EE++G   +  D+R  L+ L++     R YP  ++    +  + VGNW T+Q+L+D  + PP +L+QHP+I T  ++F
Sbjct:   29 NELGIRYEEIEGTEPNNHDIRNDLFRLAEMKGGSREYPLFFILRSPDTIEFVGNWNTVQKLMDANNNPPSYLKQHPDIMTVSRLF 113

[Close]

BLAST of jgi.p|Trimin1|351161 vs. uniprot
Match: A0A196S930_BLAHN (Uncharacterized protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S930_BLAHN)

HSP 1 Score: 60.1 bits (144), Expect = 5.640e-8
Identity = 30/96 (31.25%), Postives = 48/96 (50.00%), Query Frame = 3

Query:  300 SSDQRRCRDLFNAKGLLFEELDGGAAHYRDLREFLWGLSKE----RTYPQIYLESGGEKYKHVGNWQTIQELLDTCDMPPEFLEQHPEIRTFDKVF 575
            SS+    +     K ++FE++DG     +++R  L+ L+ +    R YP  ++    +   ++GNW  IQE LDT  +    L  HPEI TF   F
Sbjct:   18 SSNVLVLKAFLKQKNIIFEDIDGALPENKNIRNVLFDLAVKQGGTREYPSAFVMKEDKSITYIGNWDRIQEYLDTESIDKATLAAHPEIVTFSSFF 113

[Close]

BLAST of jgi.p|Trimin1|351161 vs. uniprot
Match: A0A7S0B886_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0B886_9DINO)

HSP 1 Score: 58.5 bits (140), Expect = 2.610e-7
Identity = 33/98 (33.67%), Postives = 57/98 (58.16%), Query Frame = 3

Query:  309 QRRCRDLFNAKGLLFEELDGGAAHYRDLREFLWGLSKER-TYPQIYLESGGEKYKHVGNWQTIQELLDTCDMP---PEFLEQHPEIRT--FDKVFAAV 584
            Q + R++F A+ + +EE+DG +    +LR+ L+G+S  +  YPQI+  +    Y  VGN  ++  L +   M    P  LEQ+P +++  F++VFA V
Sbjct:   25 QSQVRNIFTARNVTYEEIDGSSDDKHELRDKLFGISGLKGDYPQIFFRTPDGGYTFVGNGASVCSLDEASKMVKDMPAILEQNPALKSQLFEEVFADV 122

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351161 vs. uniprot

BLAST of jgi.p|Trimin1|351161 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6


Match Name	E-value	Identity	Description
A0A835YM95_9STRA	7.570e-90	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YRN9_9STRA	1.350e-44	56.10	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
W7TU43_9STRA	6.250e-22	41.23	Uncharacterized protein n=2 Tax=Monodopsidaceae Ta...	[more]
A0A196SA63_BLAHN	1.270e-10	34.12	Uncharacterized protein n=1 Tax=Blastocystis sp. s...	[more]
A0A196S930_BLAHN	5.640e-8	31.25	Uncharacterized protein n=1 Tax=Blastocystis sp. s...	[more]
A0A7S0B886_9DINO	2.610e-7	33.67	Hypothetical protein n=1 Tax=Pyrodinium bahamense ...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_82	contig	Contig_82:176072..179578 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351161\|estExt_Genemark1.C_Ctg_820022
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2E2F8@1\|root,2S9P0@2759\|Eukaryota
Evalue	1.28e-13
Seed ortholog	157072.XP_008866272.1
Hectar predicted targeting category	other localisation
TranscriptId	351483
Track	FilteredModels1
ProteinId	351161

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351161	gene_10948	Tribonema minus UTEX_B_3156	gene	Contig_82 176072..179578 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351161	Trimin1\|351161\|estExt_Genemark1.C_Ctg_820022	Tribonema minus UTEX_B_3156	polypeptide	Contig_82 176306..179386 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_10948_1	exon_10948_1	Tribonema minus UTEX_B_3156	exon	Contig_82 176072..176167 +
exon_10948_2	exon_10948_2	Tribonema minus UTEX_B_3156	exon	Contig_82 176274..176536 +
exon_10948_3	exon_10948_3	Tribonema minus UTEX_B_3156	exon	Contig_82 177137..177346 +
exon_10948_4	exon_10948_4	Tribonema minus UTEX_B_3156	exon	Contig_82 179330..179578 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_10948	UTR5_10948	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_82 176072..176167 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_10948	CDS_10948	Tribonema minus UTEX_B_3156	CDS	Contig_82 176306..176536 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_10948	UTR3_10948	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_82 179387..179578 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_82:176072..179578+
coding sequence from alignment at Contig_82:176072..179578+

spliced messenger RNA

>mRNA_10948 ID=mRNA_10948|Name=jgi.p|Trimin1|351161|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=818bp|location=Sequence derived from alignment at Contig_82:176072..179578+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAACATTCAAGAGCCTCTTGTCCTGCCAGCTCCTCGTGCACGACGCCGGC
TGGCACTGTTGCTGAGAACCGCCGACGCTGAAGCACCTTTTACTTGGCGC
ACCAGCCCACTCGCTTGCAGCCCCAAGCATGAGTCCCGTTCGGACACCTG
CGAGTGAAGGAGGCGAGGAAGTCGCAGCAGCAGAACAAGGAAGCAGTAGC
GCTGGCGCAGGTGGTGGCTCCACTACGACTACGACTACGACTGGCCCCCT
GACAAAAATCATCGTGTTGGTGTCCAGCATTGGTGGCAGCGCCAAACAAT
CATCTGATCAACGACGGTGTCGAGACCTTTTCAATGCCAAAGGCCTGTTA
TTCGAGGAGCTGGACGGCGGCGCGGCGCATTACAGGGACCTAAGGGAGTT
CCTGTGGGGCCTGAGCAAGGAGCGGACGTATCCGCAGATATACTTGGAGA
GCGGGGGGGAGAAATATAAGCACGTGGGGAACTGGCAGACGATACAGGAG
CTGCTGGACACGTGCGACATGCCGCCCGAGTTCCTGGAGCAGCACCCGGA
GATTAGGACGTTTGACAAGGTATTTGCAGCGGTGCCAAAAGGCAAGCCCA
CGCACAACCTGTCAACGGTGTGGTGACGAGAGCACAGCAGCGGCGGCAAC
ACCCCCCACCCCCCCTTTGCAGCAGCGCTGCACCCCCCCTCTTTACAACA
GGTTGAGCGCTGCTGTTGCTGTGACAGCGCTCAGCCATGTACACAGATGT
TTGAGCGCACATACTGCCCGCCGCCAGGCATGCTTCTGGCCTGCTGTCCT
TTGTAATACAGAGACAGG

protein sequence of jgi.p|Trimin1|351161

>Trimin1|351161|estExt_Genemark1.C_Ctg_820022 ID=Trimin1|351161|estExt_Genemark1.C_Ctg_820022|Name=jgi.p|Trimin1|351161|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=166bp
MSPVRTPASEGGEEVAAAEQGSSSAGAGGGSTTTTTTTGPLTKIIVLVSS
IGGSAKQSSDQRRCRDLFNAKGLLFEELDGGAAHYRDLREFLWGLSKERT
YPQIYLESGGEKYKHVGNWQTIQELLDTCDMPPEFLEQHPEIRTFDKVFA
AVPKGKPTHNLSTVW*

mRNA from alignment at Contig_82:176072..179578+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10948 ID=mRNA_10948|Name=jgi.p|Trimin1|351161|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3507bp|location=Sequence derived from alignment at Contig_82:176072..179578+ (Tribonema minus UTEX_B_3156 )
CAACATTCAAGAGCCTCTTGTCCTGCCAGCTCCTCGTGCACGACGCCGGC
TGGCACTGTTGCTGAGAACCGCCGACGCTGAAGCACCTTTTACTTGGTAA
GTCGGCTCTCTTGGAGACTTCGTCCACATCGCTATGCTACTTGCGGCACG
CCAACAGCAGCCAATCCTGTCTCAACTGCCTCTGCTGATTTCTACTCTGC
AGGCGCACCAGCCCACTCGCTTGCAGCCCCAAGCATGAGTCCCGTTCGGA
CACCTGCGAGTGAAGGAGGCGAGGAAGTCGCAGCAGCAGAACAAGGAAGC
AGTAGCGCTGGCGCAGGTGGTGGCTCCACTACGACTACGACTACGACTGG
CCCCCTGACAAAAATCATCGTGTTGGTGTCCAGCATTGGTGGCAGCGCCA
AACAATCATCTGATCAACGACGGTGTCGAGACCTTTTCAATGCCAAAGGC
CTGTTATTCGAGGAGGTAAGCCAGCTCCATATGCTTGTTTCATGTGCTTG
ACTTCGTAATAAGGCCACTAAGGTCATAATATTTTAAAAGACGCAGAAGC
TTGTATGGACCTTGGTCACTGCATATAGCTTGCAATACTTGCGAGGGCAA
CCGTGGTGTCAAGCATGAACGAGAGTGCGTAGAAAGTCCATTTGAGCCAT
GGCACTTCGCGCCAACAGAGTCAGCAGCAGCACCGATCCAGCTGCATCAT
GGACGTGTGACTGCTGGTCTATTGCATGGCGCACTCAGGCTGACAGCGCC
ATCCTATCTGGGCTTATCATGAAGCCCTTGGCAGCTGGCAAGTCTGCCTT
CCTGTTGTACTGCTCTGTCTACAATCGCCAACAGTAGCATGTGCTTGGCC
GCGTGGTGCCTGTTGAAAGGTCACCATACAGTGACTCAATCAGTTGAAGT
AGTCCCTACCAAGCGTGCAACGGGCTGCAGCAGCAGCAGCAGCAGCGGAT
CTCTCACGGAGTTTGAGCAGCCGATGGGCGCATGCTGCCATCCTTTGCAC
TTGCACCTTGCCAACGTGTCTCTTGCTGATCGTCACCACCACTCTTTGCC
CGCATCTGCGCGCAGCTGGACGGCGGCGCGGCGCATTACAGGGACCTAAG
GGAGTTCCTGTGGGGCCTGAGCAAGGAGCGGACGTATCCGCAGATATACT
TGGAGAGCGGGGGGGAGAAATATAAGCACGTGGGGAACTGGCAGACGATA
CAGGAGCTGCTGGACACGTGCGACATGCCGCCCGAGTTCCTGGAGCAGCA
CCCGGAGATTAGGACGTTTGACAAGGTGAGGCGGGGGCGCGTCCCCGTTG
CAGTTGAAGTTGCATGTTGATTTGTTATTGTCTCCATGTACATAGTGTGG
TCATCATCCGACACTGCGATTCAGCGATGACTGGACAGTGCGCTTTTCGT
GTGGCCAAGGATGCAAGCTGAGTGCAAACTGGCCCCCGAGCACACTTCAA
GTGCGTCTTTTACTTCAACATGGGAGTAGGAGCTTGCTTTTGATGGGAGT
TGTGGTAGCCTTCGCAGAGTCTTCAGAGATGGCAGTTGGCCCACATACAC
ATCTTCGACCATCCCCTGCTCCTTGAATGTGCTGTAGCATTAACACCATG
GGCCACTGATCAGTGGCAGTCGCCCATATGCTCAAGGAGTGCCTGCAAGG
TAGGGTTGATGTTGGTGGGCTTAGGGCACGAGTGCCCTCAACCATTTCCT
GTTCTCGAAAGGCAGCAGAAGCGGCGTGGGGCCTGCGGCATTTACAACCG
CCCACGTGCCCAAGGACCCTCCTTGATAGGGTGGGGTTTGTAGGGCTGTG
TTGGGGCTAGGGTTAGCGTGGGATGGCAAGATTTGATGCTGCCACAAAGT
CTGCAGCTCAGGTGCTGCGTCGCAATGCTTGGGATCAGCCCTCGTTTGCG
CTGCAGAGATCAGTTGGTGGGTCAAAGTATATCAATCCAGAATTGTTCGG
GCTTGAATTCACTTCTGTAATCCATGTGTTCTGATCTGAAAATGAGCAGA
AGTAAGATCTCACTAACATCTTACTCATTGTGCTGTTAGTAAACGACACA
ACGAATAAAGTTGCTTCAAAGCAATTTTTTAAACAAAAAGTTGTGTTCCT
TGTTGTTCTCTCTGACACCACAAAGAACGGTGCCTTAGGGTTGTTGTCGA
GACGTTACAGCTGCCACGCAGCTGCAGGGTACAGAACAAACCGCCTCGTT
TGAGTCAAGCACAAGGTTCAGCTGCTACATGTACTTCAATTTGGAGTGAA
TCCGCCAACCAGAGCTCTGTGCTTGGACAGCTTTTTGAGGTGATCAATAG
CTAGTGAAACCATCTCGCTGTATTGTGCAAGCAAACGGTCATGGGCACGC
GTAATCTGGGCATGATGTGAACAGTTTTATGTGGAAGTCTCAGTTGCCCT
TGAAGTGGAAGCTGATCAGCGAGACAGTTGAACTTTGCATTGAGCCTGAC
GAACCGTGTGTGGCTCTAGCTGCAGCAAGCTCAAGCGGAGTAAAGACAAG
CTTGAGTTGCAGTGCACAAAAATGCTTTTTCCAGCACCATCGCAGAGTGC
CGACTGAACACCACTAGCCTGTTGCCTGCTGCTTTCATGTATACGTTTTA
CAATTTACCGTAGCATAGTGAGTCACCCTCATATGGACACGAGACACACA
AACCGCACGGCATCCAGAGGTACAACTTCAAATGTGAACTTCAACGTATG
TTTTCACTGGAAAAGTGGCCGACACGTTGAGGCTGTATCGCTAAAGCTTT
CACTACGCGCAAGCAGCGTGGAGTGCATCGCTTCTACCTCTGGGCAATTG
CCGTCAGCATAACGATCACTGCAGTCATCACGTTATATGTAGGCTTGCGC
AGAGACTTTCTGCGTGTTCTTCATCCACCATCACAGACTTGTCCGTGCTG
AAACCGTCCATCTTTCGTGCACTCAGTTTTACATGACGCCAACGAAAGGA
GCGCACCTTGACAAATGATGCTGCAATGTTGCACTGAAAAACGCTTGGCA
TCCGCTGCACTAAGGTTTACATGATGCCAAACAAAGAACGCACGTTGGAA
AATTGCAAATGCTGCGATAGTGCACTGAACATGCTCGGCTTCCGCTCTCC
TGCTGCCCGCCACAGCTCCTGGCTATATATATCTGCAGCGGACACTTCCA
CAAAATGCCACACAAAAACACAAATCTCAACACAATAGCAGACGCGGCAA
CATTACGCGAGTACGAGAATATCGAGCTGATGTGTCCCTCACCTGCTCTG
CATGACAGGTATTTGCAGCGGTGCCAAAAGGCAAGCCCACGCACAACCTG
TCAACGGTGTGGTGACGAGAGCACAGCAGCGGCGGCAACACCCCCCACCC
CCCCTTTGCAGCAGCGCTGCACCCCCCCTCTTTACAACAGGTTGAGCGCT
GCTGTTGCTGTGACAGCGCTCAGCCATGTACACAGATGTTTGAGCGCACA
TACTGCCCGCCGCCAGGCATGCTTCTGGCCTGCTGTCCTTTGTAATACAG
AGACAGG

Coding sequence (CDS) from alignment at Contig_82:176072..179578+

>mRNA_10948 ID=mRNA_10948|Name=jgi.p|Trimin1|351161|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=498bp|location=Sequence derived from alignment at Contig_82:176072..179578+ (Tribonema minus UTEX_B_3156 )
ATGAGTCCCGTTCGGACACCTGCGAGTGAAGGAGGCGAGGAAGTCGCAGC
AGCAGAACAAGGAAGCAGTAGCGCTGGCGCAGGTGGTGGCTCCACTACGA
CTACGACTACGACTGGCCCCCTGACAAAAATCATCGTGTTGGTGTCCAGC
ATTGGTGGCAGCGCCAAACAATCATCTGATCAACGACGGTGTCGAGACCT
TTTCAATGCCAAAGGCCTGTTATTCGAGGAGCTGGACGGCGGCGCGGCGC
ATTACAGGGACCTAAGGGAGTTCCTGTGGGGCCTGAGCAAGGAGCGGACG
TATCCGCAGATATACTTGGAGAGCGGGGGGGAGAAATATAAGCACGTGGG
GAACTGGCAGACGATACAGGAGCTGCTGGACACGTGCGACATGCCGCCCG
AGTTCCTGGAGCAGCACCCGGAGATTAGGACGTTTGACAAGGTATTTGCA
GCGGTGCCAAAAGGCAAGCCCACGCACAACCTGTCAACGGTGTGGTGA