mRNA_10942 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|150531 vs. uniprot
Match: A0A835YJ96_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ96_9STRA) HSP 1 Score: 416 bits (1068), Expect = 2.490e-147 Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1 Query: 1 IANGHFDSHVRDLAKEIAKKGRLVWIRQMHEFNSENTYQWCLYPFTSAKIATFKRALRRLVNIYRQEKAPVKFQLTFMAKNPHNDGTPFSQFYPGRRYVDHVGVDLYVNAGSRLVSLKVRLEDDVYSQLTQFSKPIFIGELSCTDKGLDKAKWIHDAWNDLALHFPKISIINWFFEDKGGKRQWNLHSPAEVKAFV 588 IANGHFDSHVRDLAKEIAKKGRLVWIRQMHEFNSENTYQWCLYPFTSAKIATFKRALRRLVNIYRQEKAPVKFQLTFMAKNPHNDGTPFSQFYPGRRYVDHVGVDLYVNAGSRLVSLKVRLEDDVYSQLTQFSKPIFIGELSCTDKGLDKAKWIHDAWNDLALHFPKISIINWFFEDKGGKRQWNLHSPAEVKAFV Sbjct: 1 IANGHFDSHVRDLAKEIAKKGRLVWIRQMHEFNSENTYQWCLYPFTSAKIATFKRALRRLVNIYRQEKAPVKFQLTFMAKNPHNDGTPFSQFYPGRRYVDHVGVDLYVNAGSRLVSLKVRLEDDVYSQLTQFSKPIFIGELSCTDKGLDKAKWIHDAWNDLALHFPKISIINWFFEDKGGKRQWNLHSPAEVKAFV 196
BLAST of jgi.p|Trimin1|150531 vs. uniprot
Match: A0A836CLT1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT1_9STRA) HSP 1 Score: 335 bits (859), Expect = 4.690e-113 Identity = 150/196 (76.53%), Postives = 175/196 (89.29%), Query Frame = 1 Query: 1 IANGHFDSHVRDLAKEIAKKGRLVWIRQMHEFNSENTYQWCLYPFTSAKIATFKRALRRLVNIYRQEKAPVKFQLTFMAKNPHNDGTPFSQFYPGRRYVDHVGVDLYVNAGSRLVSLKVRLEDDVYSQLTQFSKPIFIGELSCTDKGLDKAKWIHDAWNDLALHFPKISIINWFFEDKGGKRQWNLHSPAEVKAFV 588 IANG FDS VR LAK IAKKG +VWIRQ+HEFNSENTY WC+YP++ KIATFKRA R LVNIYR+EKAPV FQLT++A+NPHND TPF+ FYPGR YVDHVGVD+YVN GSRLVSLK RL+D+VYSQL+QF KPIFIGE+SCTDKGLDKAKWI+DAW+DLA++FP+I+I++WF EDKGGKRQWNLH+ E+ AFV Sbjct: 143 IANGRFDSSVRKLAKAIAKKGTVVWIRQLHEFNSENTYHWCVYPYSQRKIATFKRAWRHLVNIYREEKAPVLFQLTYIAQNPHNDRTPFAHFYPGREYVDHVGVDIYVNPGSRLVSLKTRLQDNVYSQLSQFGKPIFIGEVSCTDKGLDKAKWIYDAWHDLAVYFPRITIVSWFLEDKGGKRQWNLHTKKEISAFV 338
BLAST of jgi.p|Trimin1|150531 vs. uniprot
Match: A0A836CH71_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH71_9STRA) HSP 1 Score: 254 bits (650), Expect = 1.640e-81 Identity = 126/198 (63.64%), Postives = 145/198 (73.23%), Query Frame = 1 Query: 1 IANGHFDSHVRDLAKEIAKKGRLVWIRQMHEFNSENTYQWCLYPFTSAKIATFKRALRRLVNIYRQEKAPVKFQLTFMAKNP--HNDGTPFSQFYPGRRYVDHVGVDLYVNAGSRLVSLKVRLEDDVYSQLTQFSKPIFIGELSCTDKGLDKAKWIHDAWNDLALHFPKISIINWFFEDKGGKRQWNLHSPAEVKAFV 588 IA+G +D VR LA+ IA KG VWIR +HEFNSENTY WCLYPFT AKIATFKRA RR+V+IYR+E+APVKFQL FMAKNP D TPFS F PGR YVD VGVD+YVNA + SLK +L D +Y QL F KPIFIGE+S T K D+ +WI DAW+ LAL FP+I I+WF E KG KR W L E+ AFV Sbjct: 140 IADGCYDDEVRSLARAIADKGVNVWIRFLHEFNSENTYPWCLYPFTDAKIATFKRAWRRIVSIYREERAPVKFQLCFMAKNPGGDKDRTPFSAFNPGRDYVDAVGVDVYVNAAKHMPSLKEKLNDGIYEQLLWFGKPIFIGEMSVTTKIPDRPQWIFDAWHALALDFPRIKYISWFLECKGDKRPWCLLKQEEIDAFV 337
BLAST of jgi.p|Trimin1|150531 vs. uniprot
Match: A0A836CHN7_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHN7_9STRA) HSP 1 Score: 250 bits (638), Expect = 7.990e-79 Identity = 116/176 (65.91%), Postives = 141/176 (80.11%), Query Frame = 1 Query: 1 IANGHFDSHVRDLAKEIAKKGRLVWIRQMHEFNSENTYQWCLYPFTSAKIATFKRALRRLVNIYRQEKAPVKFQLTFMAKNPHNDGTPFSQFYPGRRYVDHVGVDLYVNAGSRLVSLKVRLEDDVYSQLTQFSKPIFIGELSCTDKGLDKAKWIHDAWNDLALHFPKISIINWFFE 528 IANGH+D VR LAK+I KG+ VWIR MHEFN ENTY WC+YPFT KIA FK+A +R+VNIYR+EKAPVKFQL + A+NP P+SQ YPG +VDHVGVD+YVNAGS+ SLK RL+++VYSQL +F+KPIFIGE+S TD G DK KW AW+DLA+HFPKI+I+N+F E Sbjct: 90 IANGHYDGAVRKLAKDIRAKGKTVWIRFMHEFNYENTYPWCIYPFTDHKIAQFKKAWKRVVNIYREEKAPVKFQLCYQARNPTKKQKPYSQLYPGDAFVDHVGVDVYVNAGSKQ-SLKERLDNNVYSQLVKFNKPIFIGEMSVTDVGTDKPKWFKQAWHDLAVHFPKITIVNFFLE 264
BLAST of jgi.p|Trimin1|150531 vs. uniprot
Match: A0A835ZIN4_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIN4_9STRA) HSP 1 Score: 242 bits (618), Expect = 7.530e-76 Identity = 117/200 (58.50%), Postives = 141/200 (70.50%), Query Frame = 1 Query: 1 IANGHFDSHVRDLAKEIAKKGRLVWIRQMHEFNSENTYQWCLYPFTSAKIATFKRALRRLVNIYRQEKAPVKFQLTFMAKNP--HNDGTPFSQFYPGRRYVDHVGVDLYVNAGSRLVSLKVRLEDDVYSQLTQFSKPIFIGELSCTDKGLDKAKWIHDAWNDLALHFPKISIINWFFEDKGGK--RQWNLHSPAEVKAFV 588 IA+G D VR LA++IA KG VWIR MHEFN E TY W LYP+T K+ATFKRA RR+V++YR+E+APVKFQL FMAKNP D TPFS F PG+ Y VGVD+YVNA R+ SLK +L D+VY+QL F KP+FIGE+S T D+ WI +AW LAL FP++ +NWF EDK R W LHS AE+ AFV Sbjct: 207 IADGACDDAVRKLARDIAAKGETVWIRMMHEFNGEKTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMAKNPGGDKDRTPFSAFNPGQDYFHQVGVDVYVNAAKRMPSLKEKLNDNVYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVNWFLEDKSPAPTRSWGLHSRAEIDAFV 406
BLAST of jgi.p|Trimin1|150531 vs. uniprot
Match: A0A835Z2E4_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2E4_9STRA) HSP 1 Score: 235 bits (600), Expect = 8.080e-76 Identity = 113/200 (56.50%), Postives = 138/200 (69.00%), Query Frame = 1 Query: 1 IANGHFDSHVRDLAKEIAKKGRLVWIRQMHEFNSENTYQWCLYPFTSAKIATFKRALRRLVNIYRQEKAPVKFQLTFMAKNP--HNDGTPFSQFYPGRRYVDHVGVDLYVNAGSRLVSLKVRLEDDVYSQLTQFSKPIFIGELSCTDKGLDKAKWIHDAWNDLALHFPKISIINWFFEDKGGK--RQWNLHSPAEVKAFV 588 IA+G D VR LA+ IA KG VWIR MHE N E TY W LYP+T K+ATFKRA RR+V++YR+E+APVKFQL FMA+NP D TPFS F PGR Y D VGVD+YVNA R+ SLK +L D +Y+QL F KP+FIGE+S T D+ WI +AW LAL FP++ ++WF E K R W LH+ AE+ AFV Sbjct: 1 IADGACDDAVRKLARAIAAKGETVWIRMMHELNGEGTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMARNPGGDKDRTPFSAFNPGRDYFDQVGVDVYVNAAKRMPSLKEKLNDGIYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVSWFLEGKSPAPTRSWGLHNQAEIDAFV 200
BLAST of jgi.p|Trimin1|150531 vs. uniprot
Match: A0A835YSC6_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC6_9STRA) HSP 1 Score: 230 bits (586), Expect = 3.950e-73 Identity = 108/196 (55.10%), Postives = 139/196 (70.92%), Query Frame = 1 Query: 1 IANGHFDSHVRDLAKEIAKKGRLVWIRQMHEFNSENTYQWCLYPFTSAKIATFKRALRRLVNIYRQEKAPVKFQLTFMAKNPHNDGTPFSQFYPGRRYVDHVGVDLYVNAGSRLVSLKVRLEDDVYSQLTQFSKPIFIGELSCTDKGLDKAKWIHDAWNDLALHFPKISIINWFFEDKGGKRQWNLHSPAEVKAFV 588 IANG +D+ VR LA++IA+KG VWIR +HEFNS+ TY W LYPFT+ KI FKRA RR+VNIY + APV+FQL F+ N D TPFS F PGR YVD VGVD+Y+N S+LVSLK RL++ +Y QL F+KPIF GE+ CT D+ KW+ DAW LAL FP++ +++F E +G +R W L +E+ FV Sbjct: 46 IANGCYDTEVRKLARDIARKGDTVWIRMLHEFNSD-TYVWGLYPFTTDKIRAFKRAWRRIVNIYCDQGAPVQFQLCFLGTNSSGDKTPFSAFNPGRNYVDQVGVDVYINTNSKLVSLKERLDNGIYDQLLWFNKPIFFGEIGCTPAIGDRGKWMRDAWRSLALDFPQVKAVSYFLECEGPQRPWCLTKQSEINGFV 240
BLAST of jgi.p|Trimin1|150531 vs. uniprot
Match: A0A836CC94_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC94_9STRA) HSP 1 Score: 226 bits (577), Expect = 1.180e-71 Identity = 110/196 (56.12%), Postives = 137/196 (69.90%), Query Frame = 1 Query: 1 IANGHFDSHVRDLAKEIAKKGRLVWIRQMHEFNSENTYQWCLYPFTSAKIATFKRALRRLVNIYRQEKAPVKFQLTFMAKNPHNDGTPFSQFYPGRRYVDHVGVDLYVNAGSRLVSLKVRLEDDVYSQLTQFSKPIFIGELSCTDKGLDKAKWIHDAWNDLALHFPKISIINWFFEDKGGKRQWNLHSPAEVKAFV 588 IANG +D VR LAK+IAKKG VWIR +HEFNS NTY W LYPF+ I TFK+A +R+V IYR+E APVKFQL F+ N H D TPF F PG +VD VGVD+YVNAGS++VSL+ RL+ +Y L QF KPIFIGE+ T D+A+WI DAW LA+ F ++ +++F E K RQW L + E+ AFV Sbjct: 65 IANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNS-NTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV 259
BLAST of jgi.p|Trimin1|150531 vs. uniprot
Match: A0A836CET3_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET3_9STRA) HSP 1 Score: 222 bits (565), Expect = 1.320e-69 Identity = 110/197 (55.84%), Postives = 135/197 (68.53%), Query Frame = 1 Query: 1 IANGHFDSHVRDLAKEIAKKGRLVWIRQMHEFNSENTYQWCLYPFTSAKIATFKRALRRLVNIYRQEKAPVKFQLTFMAKNPHNDGTPFSQFYPGRRYVDHVGVDLYVNAGSRLVSLKVRLEDDVYSQLTQFSKPIFIGELSCTDKGLDKAKWIHDAWNDLAL-HFPKISIINWFFEDKGGKRQWNLHSPAEVKAFV 588 I +G FD VR L ++I G VWIRQ+HEFN TY WC+ + A IA FKRA RR+V++YR+ APV+FQ AKNP P+SQ YPG VD VGVDLY+N GS+LVSLK RL+D VYSQL F KP+FIGE SCTD+GLDKA W+ +AW DLA F I+ +N+F DK +R W L++ AEVK FV Sbjct: 63 ILDGKFDDDVRRLGRDIKAGGEEVWIRQLHEFNYAGTYPWCI-DLSPASIALFKRAWRRIVSLYREVGAPVRFQWCLQAKNPGKVQVPYSQLYPGDDAVDAVGVDLYINPGSKLVSLKQRLQDGVYSQLAAFGKPVFIGETSCTDEGLDKAGWMREAWRDLASPSFDSITTVNFFLVDKDPRRWWGLNTAAEVKGFV 258
BLAST of jgi.p|Trimin1|150531 vs. uniprot
Match: A0A835YZ29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ29_9STRA) HSP 1 Score: 232 bits (592), Expect = 4.860e-69 Identity = 114/196 (58.16%), Postives = 141/196 (71.94%), Query Frame = 1 Query: 1 IANGHFDSHVRDLAKEIAKKGRLVWIRQMHEFNSENTYQWCLYPFTSAKIATFKRALRRLVNIYRQEKAPVKFQLTFMAKNPHNDGTPFSQFYPGRRYVDHVGVDLYVNAGSRLVSLKVRLEDDVYSQLTQFSKPIFIGELSCTDKGLDKAKWIHDAWNDLALHFPKISIINWFFEDKGGKRQWNLHSPAEVKAFV 588 I G FD V+ LA +I G+ VWIR MHEFN E+TY WCLYP+TS KI +K A RR+V IYR+ APV+FQ A NPH+D TPF+ FYPG VD VGVDLY+NAGS LVSLK RL VY+QL F KPIFIGE SCTD GLDKA+W+ DA +D+ +FP I + +FFE+KG W+L++P++V+AFV Sbjct: 495 INAGKFDDAVKALATDIKAVGKEVWIRLMHEFNYESTYPWCLYPYTSPKIDAYKEAWRRIVAIYRRVGAPVQFQWCLSATNPHSDKTPFAAFYPGDDVVDQVGVDLYINAGSALVSLKTRLNKGVYAQLQAFRKPIFIGETSCTDIGLDKAQWLLDACHDVPHYFPGIISMTFFFENKGA-HMWDLNTPSQVQAFV 689 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150531 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10942 ID=mRNA_10942|Name=jgi.p|Trimin1|150531|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=588bp|location=Sequence derived from alignment at Contig_82:142923..143510- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATTGCAAATGGACATTTTGATTCGCATGTGCGGGACTTAGCAAAAGAGATback to top protein sequence of jgi.p|Trimin1|150531 >Trimin1|150531|gw1.82.82.1 ID=Trimin1|150531|gw1.82.82.1|Name=jgi.p|Trimin1|150531|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=196bp IANGHFDSHVRDLAKEIAKKGRLVWIRQMHEFNSENTYQWCLYPFTSAKIback to top mRNA from alignment at Contig_82:142923..143510- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10942 ID=mRNA_10942|Name=jgi.p|Trimin1|150531|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=588bp|location=Sequence derived from alignment at Contig_82:142923..143510- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_82:142923..143510- >mRNA_10942 ID=mRNA_10942|Name=jgi.p|Trimin1|150531|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=588bp|location=Sequence derived from alignment at Contig_82:142923..143510- (Tribonema minus UTEX_B_3156 )back to top |