mRNA_10909 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: A0A836C8T8_9STRA (ER membrane protein complex subunit 2 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8T8_9STRA) HSP 1 Score: 369 bits (946), Expect = 5.040e-127 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1 Query: 1 MSKQELDSLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKGALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALELRGRGXXXXRARALHGLCASCAA 744 MSKQELDSLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKGALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALELRGRGXXXXRARALHGLCASCAA Sbjct: 1 MSKQELDSLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKGALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALELRGRGXXXXRARALHGLCASCAA 248
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: D8LJ58_ECTSI (ER membrane protein complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ58_ECTSI) HSP 1 Score: 151 bits (381), Expect = 2.750e-41 Identity = 97/247 (39.27%), Postives = 129/247 (52.23%), Query Frame = 1 Query: 1 MSKQELDSLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKGALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALELRGRGXXXXRARALHGLCASCA 741 MS ++L L A G RDLLRF+RKEK+R P L ++YG L+ +LG++ WV+HEQ+ AALD D+ A + L RKFPGS RV+ L M EA G AA Y +++ANPAN++A KR+VA L+A G T AV ALN +L + D EAW QLA + ++RARKHF+Q+++L G AR LHGLC +CA Sbjct: 1 MSLKKLPELCREASGGKLSPLRDLLRFLRKEKIRRPDLCLQYGKQLLTYGRSLGDELWVIHEQMVTAALDSGDVPTAHEHLQVLTRKFPGSQRVRRLEGMRCEAEGSFAAAAAIYEEMVEANPANSLARKRQVAVLIAKGDTAGAVKALNGYLAEFAADGEAWLQLAKLHIGALNYAAAAFCYEELVLVAPSDHVVHCRLGEVYYTMGGAENLMRARKHFSQSVDLLKAGN----ARGLHGLCQTCA 243
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: A0A6H5KPY1_9PHAE (ER membrane protein complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY1_9PHAE) HSP 1 Score: 137 bits (345), Expect = 6.670e-36 Identity = 78/167 (46.71%), Postives = 103/167 (61.68%), Query Frame = 1 Query: 1 MSKQELDSLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKGALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLA 501 MS ++L L A G RDLLRF+RKE++R P L ++YG L+ +LG++ WV+HEQ+ AALD D+ A + L RKFPGS RV+ L M EA G AA Y +++ANPAN++A KR+VA L+A G T AV ALN +L + D EAW QLA Sbjct: 1 MSLKKLPELCREASGGKLSPLRDLLRFLRKERIRRPDLCLQYGKQLLTYGRSLGDELWVIHEQMVTAALDSGDVPTAHEHLQVLTRKFPGSQRVRRLEGMRCEAEGSFAAAAAIYEEMVEANPANSLARKRQVAVLIAKGDTAGAVKALNGYLAEFAADGEAWLQLA 167
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: A0A7S3XW17_HETAK (ER membrane protein complex subunit 2 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XW17_HETAK) HSP 1 Score: 122 bits (306), Expect = 1.120e-30 Identity = 71/165 (43.03%), Postives = 101/165 (61.21%), Query Frame = 1 Query: 10 QELDSLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKGALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAA 504 QEL +L + AG +++ +LL ++R K+R P LV +YG+ L+NS +LG++ W ++EQV A+LD + A + AL++KFPGS+RVK L + E+ + AE YA +L ANPAN +A KRR A LA G+ A AL D+L P D AW QL A Sbjct: 3 QELATLIEKAG--SKKSSLELLAYMRAHKVRRPDLVFKYGVKLLNS--SLGDEVWTIYEQVFMASLDLGEQEVANHALNALKKKFPGSSRVKRLAGLYEESEENYPQAEALYAELLAANPANTLALKRRAAVELARGRPAAAARALGDYLRDFPADVAAWEQLLA 163
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: A0A7S2S8F2_9STRA (ER membrane protein complex subunit 2 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8F2_9STRA) HSP 1 Score: 117 bits (292), Expect = 1.180e-27 Identity = 87/243 (35.80%), Postives = 121/243 (49.79%), Query Frame = 1 Query: 22 SLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKG--ALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALELRGRGXXXXRARALHGLCASCAA 744 S+ GR + A LL++IR KLRE LV++YG PL+ G ALG++ W V EQV AALD D+ A+AC+ L +FP S RVK LV M SEA D AA Y +L+ANPAN +A KR++ L A + A+ LN+++++ D AW +LA + + ARKHF ++LEL+ + RALHGL + C+A Sbjct: 14 SVVKTKGRSTA-AVTALLKYIRTHKLRESKLVVQYGKPLVQGGGGSALGDEKWTVLEQVFIAALDTKDMDLADACLRGLHTQFPDSARVKRLVGMKSEAERDYTAALQIYDELLEANPANQLAMKRKICILRADNKVQSAIHELNEYIKRFQADASAWQELADLYLSVAKYDSAAFCYEELILHNPMSHLLHCRLGEIYYTLGKENLTV-ARKHFCKSLELKRKDNP----RALHGLRSCCSA 250
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: A0A3F2S295_9STRA (ER membrane protein complex subunit 2 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S295_9STRA) HSP 1 Score: 115 bits (288), Expect = 3.500e-27 Identity = 82/228 (35.96%), Postives = 108/228 (47.37%), Query Frame = 1 Query: 1 MSKQELDS-LADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKG-ALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALEL 678 M ++E + LA A G +LL+++RKEKLREP V G L+ LG + W V+EQ C AALD D AE C+ AL+ KFPGS+RV L M E RG+ A Y +L+ANPANA+ KR++A L A +T V ALN+ L D AWT+L D +L ARKH+A ++EL Sbjct: 1 MGQREFEQKLAAAEQGGARDRCVELLQYVRKEKLREPRAVASIGKLLVTKHSWGLGGEAWAVYEQTCIAALDVHDDELAETCLKALQTKFPGSSRVARLEGMFLEQRGEFAKALALYDELLEANPANALVLKRKIAVLKAQKKTADVVTALNEFLRSFGTDLAAWTELGETYLSLGAYRYAAFCYEELVLLNPMDSIFHSRLADIYSTIGGLDNLLTARKHYAHSIEL 228
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: H3HDU6_PHYRM (ER membrane protein complex subunit 2 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HDU6_PHYRM) HSP 1 Score: 115 bits (288), Expect = 3.500e-27 Identity = 79/219 (36.07%), Postives = 107/219 (48.86%), Query Frame = 1 Query: 25 LADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKG-ALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALEL 678 LA A G G + +LL+++R+EKLREP V G L+ LG++ W V+EQ AALD D A+ C+TAL+RKFPGS+RV L M E RG+ A Y +L++NPAN + KR++A L A +T VAALN+ L D AWT+L D +L ARKH+A ++EL Sbjct: 10 LAAAEGSGARERCVELLQYVRREKLREPRAVARVGQLLVTKHSWGLGDELWSVYEQTLVAALDLHDDELADTCLTALQRKFPGSSRVARLEGMRLEQRGEFVKALALYDELLESNPANMLVLKRKIAVLKAQKKTADVVAALNELLRSFGSDLAAWTELGETYLSMGAYRYAAFCYEEMVLLNPMDAISHSRLADIYSTVGGLDNLLTARKHYAHSIEL 228
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: W2QL82_PHYPN (ER membrane protein complex subunit 2 n=9 Tax=Phytophthora TaxID=4783 RepID=W2QL82_PHYPN) HSP 1 Score: 115 bits (287), Expect = 4.900e-27 Identity = 82/228 (35.96%), Postives = 110/228 (48.25%), Query Frame = 1 Query: 1 MSKQELDS-LADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKG-ALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALEL 678 M ++E + LA A G +LL ++RKEKLREP V G L+ LG++ W V+EQ AALD D AE C+ AL+ KFPGS+RV L M E RG+ A YA +L+ANPANA+ KR++A L A +T + V ALN+ L+ D AWT+L D +L ARKH+A ++EL Sbjct: 1 MGQREFEQKLATAERSGARDKCVELLHYVRKEKLREPRAVASIGKLLVTKHSWGLGDELWGVYEQTFVAALDLHDDELAETCLKALQTKFPGSSRVARLEGMQLEQRGEFAKALVLYAELLEANPANALVLKRKIAVLKAQKKTAEVVTALNEFLKSFGTDQAAWTELGETYLSMGAYRYAAFCYEELVLLNPMDAISHSRLADIYSTIGGLDNLLTARKHYAHSIEL 228
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: A0A225UXI0_9STRA (ER membrane protein complex subunit 2 (Fragment) n=6 Tax=Phytophthora TaxID=4783 RepID=A0A225UXI0_9STRA) HSP 1 Score: 108 bits (269), Expect = 2.210e-24 Identity = 79/226 (34.96%), Postives = 104/226 (46.02%), Query Frame = 1 Query: 19 DSLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKG-ALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGK-----AVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALEL 678 + LA+A G DLL ++RKEKLREP V G L+ LG++ W V+EQ AALD D AE C+ AL+ KFPGS+RV L M E RG+ A Y +L+ANPANA+ KR++A L A +T + ALN+ L D AWT+L D +L ARKH+A ++EL Sbjct: 8 EKLAEAERSGARHQCVDLLHYVRKEKLREPRAVATVGKLLVTKHSWGLGDELWSVYEQTFIAALDLHDDELAETCLKALQTKFPGSSRVARLEGMQLEQRGEFAKALALYDELLEANPANALVLKRKIAVLKAQKKTADKKTADVITALNEFLRSFGTDQAAWTELGETYLSMGTYRYAAFCYEELVLLNPMDAISHSRLADIYSTIGGLDNLLTARKHYAHSIEL 233
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Match: A0A3M6V6N0_9STRA (ER membrane protein complex subunit 2 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V6N0_9STRA) HSP 1 Score: 107 bits (268), Expect = 3.380e-24 Identity = 78/214 (36.45%), Postives = 101/214 (47.20%), Query Frame = 1 Query: 52 SQAARD----LLRFIRKEKLREPGLVMEYGIPLINSKG-ALGEDTWVVHEQVCCAALDCADLAAAEACITALRRKFPGSTRVKLLVSMLSEARGDLEAAETTYAGILDANPANAVAAKRRVATLLAAGQTGKAVAALNDHLEQSPGDPEAWTQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPDAVLRARKHFAQALEL 678 S ARD LL ++RKEKLREP V G L+ LG++ W V+EQ AALD D +E C+ AL+ KFPGS+RV L M E R + A Y +L+ANPANA+ KR++A L A +T V ALN+ L D AWT+L D +L+ARKH+A +LEL Sbjct: 15 SNRARDDCLELLHYVRKEKLREPHAVASIGKLLVTKHSWGLGDELWTVYEQTFIAALDLHDDELSETCLKALQTKFPGSSRVARLEGMQLEQRREFTKALALYDELLEANPANALVFKRKIAVLKAQRKTADVVTALNEFLRSFGTDQTAWTELGETYLSIGTYRYAAFCYEELVLLNPMDAISHSRLADIYATIGGLDNLLKARKHYAHSLEL 228 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152212 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10909 ID=mRNA_10909|Name=jgi.p|Trimin1|152212|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=744bp|location=Sequence derived from alignment at Contig_70:597113..597856+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCAAAACAAGAGTTGGATTCGTTGGCAGATGCGGCAGGCAGAGGCCCback to top protein sequence of jgi.p|Trimin1|152212 >Trimin1|152212|gw1.70.104.1 ID=Trimin1|152212|gw1.70.104.1|Name=jgi.p|Trimin1|152212|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=248bp MSKQELDSLADAAGRGPSQAARDLLRFIRKEKLREPGLVMEYGIPLINSKback to top mRNA from alignment at Contig_70:597113..597856+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10909 ID=mRNA_10909|Name=jgi.p|Trimin1|152212|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=744bp|location=Sequence derived from alignment at Contig_70:597113..597856+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_70:597113..597856+ >mRNA_10909 ID=mRNA_10909|Name=jgi.p|Trimin1|152212|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=744bp|location=Sequence derived from alignment at Contig_70:597113..597856+ (Tribonema minus UTEX_B_3156 )back to top |