mRNA_10848 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A836CAI3_9STRA (TM2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI3_9STRA) HSP 1 Score: 206 bits (523), Expect = 1.260e-67 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 Query: 1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL Sbjct: 1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 91
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A836CJ53_9STRA (TM2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ53_9STRA) HSP 1 Score: 143 bits (361), Expect = 7.440e-43 Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 1 Query: 1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273 CECDG Y+TH+P+ T ICNYH+K +LT FL+ FFVG GVDWFYLAV NPWYIVAGV+KL+T G IWWLVD+ R+LV+AFP GN V L Sbjct: 1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPL 91
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A835YS76_9STRA (TM2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS76_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.820e-37 Identity = 57/91 (62.64%), Postives = 71/91 (78.02%), Query Frame = 1 Query: 1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273 CECDGGY+T +P P C+YH+K +LT FL+ FFVG GVDWFYLAV NPWYIVAGV+KL+T G IWW+VD+ R++V+AFP GN + L Sbjct: 43 CECDGGYITREPYPP---CDYHQKSQLTTFLISFFVGWLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWIVDFIRVIVNAFPDGNDLPL 130
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A836C9M7_9STRA (TM2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M7_9STRA) HSP 1 Score: 109 bits (272), Expect = 5.000e-29 Identity = 54/93 (58.06%), Postives = 62/93 (66.67%), Query Frame = 1 Query: 1 CECDGGYMTHKPEVPTDI--CNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273 CEC+ GY++ TD CNY +K EL FLL FFVG G DWFYLA + YIVAGV KL+ G IWWL+DW RIL +AFP GNGVEL Sbjct: 27 CECNTGYVS------TDSLQCNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVEL 113
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A814T286_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A814T286_9BILA) HSP 1 Score: 109 bits (272), Expect = 9.940e-29 Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 1 Query: 1 CECDGGYMTHKPEVPTDI---CNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273 C C G++T TD+ C Y +K++LTAFLL FFVG GVDWFYL+V+NP YI+AG++KL+T G IWW+VDW R+L AF GNG L Sbjct: 47 CICSKGWIT------TDLSTGCTYQQKLKLTAFLLSFFVGFFGVDWFYLSVSNPAYIIAGIIKLITLGGFGIWWIVDWIRLLADAFLDGNGFPL 134
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A813W5K7_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A813W5K7_ADIRI) HSP 1 Score: 107 bits (267), Expect = 4.680e-28 Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = 1 Query: 1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273 C+CD G++ K + T+ CNY +K +L +FLL FF+G G DW+YL+V N YI + K++T G IWWLVDW RIL +AFP GNG L Sbjct: 40 CKCDRGWINSKDQ--TNYCNYEQKSQLASFLLSFFLGLFGADWYYLSVGNGGYIAGAIFKMLTLGGFGIWWLVDWIRILTNAFPDGNGQPL 128
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A819MKF4_9BILA (Hypothetical protein n=2 Tax=Rotaria TaxID=231623 RepID=A0A819MKF4_9BILA) HSP 1 Score: 103 bits (257), Expect = 2.090e-26 Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = 1 Query: 1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273 C C+ G+ P +D C Y +K +L AFLL FF G G DWFYL+V N YI AGV KL+T G+ IWWLVDW RIL +AF G GV L Sbjct: 51 CSCNQGWTF--PRDGSDRCTYQQKSKLAAFLLSFFAGGLGADWFYLSVGNGGYIAAGVFKLLTLGGIGIWWLVDWIRILTNAFLDGQGVAL 139
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A816C2H3_9BILA (Hypothetical protein n=2 Tax=Rotaria TaxID=231623 RepID=A0A816C2H3_9BILA) HSP 1 Score: 102 bits (254), Expect = 3.930e-26 Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 1 Query: 1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273 C C+ G+ + + + D+C Y +K +L AFLL FF+G G DWFYL+V N YI AGV K++T G+ IWW VDW RIL ++F G G+ L Sbjct: 36 CLCERGWTSSRNQ--PDVCTYQQKSKLAAFLLSFFLGAFGADWFYLSVGNGGYIAAGVFKMLTLGGIGIWWFVDWIRILTNSFVDGQGIAL 124
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A821WFW2_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821WFW2_9BILA) HSP 1 Score: 102 bits (253), Expect = 7.780e-26 Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 1 Query: 1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273 C C+ G+ + + IC Y +K +L AFLL FFVG G DWFYL+V N YI AGV K++T G+ IWWLVDW RIL ++F G GV L Sbjct: 48 CLCERGWTLSQSQ--PQICTYQQKSKLAAFLLSFFVGGLGADWFYLSVGNGGYIAAGVFKMLTLGGIGIWWLVDWMRILTNSFLDGQGVAL 136
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A813UWE6_9BILA (Hypothetical protein n=4 Tax=Rotaria sordida TaxID=392033 RepID=A0A813UWE6_9BILA) HSP 1 Score: 100 bits (250), Expect = 2.220e-25 Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 1 Query: 1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273 C C+ G+ + + IC Y +K +L AFLL FFVG G DWFYL+V N YI AGV K++T G+ IWWLVDW RIL ++F G GV L Sbjct: 48 CLCERGWTLSQSQ--PQICIYQQKSKLAAFLLSFFVGGFGADWFYLSVGNGGYIAAGVFKMLTLGGIGIWWLVDWMRILTNSFLDGQGVAL 136 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10848 ID=mRNA_10848|Name=jgi.p|Trimin1|148405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_70:23523..23795- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGTGAGTGCGACGGTGGCTACATGACGCACAAGCCTGAGGTGCCGACCGAback to top protein sequence of jgi.p|Trimin1|148405 >Trimin1|148405|gw1.70.91.1 ID=Trimin1|148405|gw1.70.91.1|Name=jgi.p|Trimin1|148405|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=91bp CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNback to top mRNA from alignment at Contig_70:23523..23795- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10848 ID=mRNA_10848|Name=jgi.p|Trimin1|148405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_70:23523..23795- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_70:23523..23795- >mRNA_10848 ID=mRNA_10848|Name=jgi.p|Trimin1|148405|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=273bp|location=Sequence derived from alignment at Contig_70:23523..23795- (Tribonema minus UTEX_B_3156 )back to top |