mRNA_10848 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|148405
Unique NamemRNA_10848
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A836CAI3_9STRA (TM2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI3_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.260e-67
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1
Query:    1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273
            CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL
Sbjct:    1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 91          
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A836CJ53_9STRA (TM2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ53_9STRA)

HSP 1 Score: 143 bits (361), Expect = 7.440e-43
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 1
Query:    1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273
            CECDG Y+TH+P+  T ICNYH+K +LT FL+ FFVG  GVDWFYLAV NPWYIVAGV+KL+T  G  IWWLVD+ R+LV+AFP GN V L
Sbjct:    1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPL 91          
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A835YS76_9STRA (TM2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS76_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.820e-37
Identity = 57/91 (62.64%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273
            CECDGGY+T +P  P   C+YH+K +LT FL+ FFVG  GVDWFYLAV NPWYIVAGV+KL+T  G  IWW+VD+ R++V+AFP GN + L
Sbjct:   43 CECDGGYITREPYPP---CDYHQKSQLTTFLISFFVGWLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWIVDFIRVIVNAFPDGNDLPL 130          
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A836C9M7_9STRA (TM2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M7_9STRA)

HSP 1 Score: 109 bits (272), Expect = 5.000e-29
Identity = 54/93 (58.06%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    1 CECDGGYMTHKPEVPTDI--CNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273
            CEC+ GY++      TD   CNY +K EL  FLL FFVG  G DWFYLA  +  YIVAGV KL+   G  IWWL+DW RIL +AFP GNGVEL
Sbjct:   27 CECNTGYVS------TDSLQCNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVEL 113          
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A814T286_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A814T286_9BILA)

HSP 1 Score: 109 bits (272), Expect = 9.940e-29
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 1
Query:    1 CECDGGYMTHKPEVPTDI---CNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273
            C C  G++T      TD+   C Y +K++LTAFLL FFVG  GVDWFYL+V+NP YI+AG++KL+T  G  IWW+VDW R+L  AF  GNG  L
Sbjct:   47 CICSKGWIT------TDLSTGCTYQQKLKLTAFLLSFFVGFFGVDWFYLSVSNPAYIIAGIIKLITLGGFGIWWIVDWIRLLADAFLDGNGFPL 134          
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A813W5K7_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A813W5K7_ADIRI)

HSP 1 Score: 107 bits (267), Expect = 4.680e-28
Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273
            C+CD G++  K +  T+ CNY +K +L +FLL FF+G  G DW+YL+V N  YI   + K++T  G  IWWLVDW RIL +AFP GNG  L
Sbjct:   40 CKCDRGWINSKDQ--TNYCNYEQKSQLASFLLSFFLGLFGADWYYLSVGNGGYIAGAIFKMLTLGGFGIWWLVDWIRILTNAFPDGNGQPL 128          
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A819MKF4_9BILA (Hypothetical protein n=2 Tax=Rotaria TaxID=231623 RepID=A0A819MKF4_9BILA)

HSP 1 Score: 103 bits (257), Expect = 2.090e-26
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273
            C C+ G+    P   +D C Y +K +L AFLL FF G  G DWFYL+V N  YI AGV KL+T  G+ IWWLVDW RIL +AF  G GV L
Sbjct:   51 CSCNQGWTF--PRDGSDRCTYQQKSKLAAFLLSFFAGGLGADWFYLSVGNGGYIAAGVFKLLTLGGIGIWWLVDWIRILTNAFLDGQGVAL 139          
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A816C2H3_9BILA (Hypothetical protein n=2 Tax=Rotaria TaxID=231623 RepID=A0A816C2H3_9BILA)

HSP 1 Score: 102 bits (254), Expect = 3.930e-26
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273
            C C+ G+ + + +   D+C Y +K +L AFLL FF+G  G DWFYL+V N  YI AGV K++T  G+ IWW VDW RIL ++F  G G+ L
Sbjct:   36 CLCERGWTSSRNQ--PDVCTYQQKSKLAAFLLSFFLGAFGADWFYLSVGNGGYIAAGVFKMLTLGGIGIWWFVDWIRILTNSFVDGQGIAL 124          
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A821WFW2_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821WFW2_9BILA)

HSP 1 Score: 102 bits (253), Expect = 7.780e-26
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273
            C C+ G+   + +    IC Y +K +L AFLL FFVG  G DWFYL+V N  YI AGV K++T  G+ IWWLVDW RIL ++F  G GV L
Sbjct:   48 CLCERGWTLSQSQ--PQICTYQQKSKLAAFLLSFFVGGLGADWFYLSVGNGGYIAAGVFKMLTLGGIGIWWLVDWMRILTNSFLDGQGVAL 136          
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Match: A0A813UWE6_9BILA (Hypothetical protein n=4 Tax=Rotaria sordida TaxID=392033 RepID=A0A813UWE6_9BILA)

HSP 1 Score: 100 bits (250), Expect = 2.220e-25
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNNPWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL 273
            C C+ G+   + +    IC Y +K +L AFLL FFVG  G DWFYL+V N  YI AGV K++T  G+ IWWLVDW RIL ++F  G GV L
Sbjct:   48 CLCERGWTLSQSQ--PQICIYQQKSKLAAFLLSFFVGGFGADWFYLSVGNGGYIAAGVFKMLTLGGIGIWWLVDWMRILTNSFLDGQGVAL 136          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148405 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CAI3_9STRA1.260e-67100.00TM2 domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A836CJ53_9STRA7.440e-4368.13TM2 domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835YS76_9STRA1.820e-3762.64TM2 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836C9M7_9STRA5.000e-2958.06TM2 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A814T286_9BILA9.940e-2954.26Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 ... [more]
A0A813W5K7_ADIRI4.680e-2850.55Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A819MKF4_9BILA2.090e-2653.85Hypothetical protein n=2 Tax=Rotaria TaxID=231623 ... [more]
A0A816C2H3_9BILA3.930e-2648.35Hypothetical protein n=2 Tax=Rotaria TaxID=231623 ... [more]
A0A821WFW2_9BILA7.780e-2651.65Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A813UWE6_9BILA2.220e-2551.65Hypothetical protein n=4 Tax=Rotaria sordida TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_70contigContig_70:23523..23795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|148405|gw1.70.91.1
DescriptionTM2 domain
COG categoryS
Max annot lvl1236|Gammaproteobacteria
EggNOG OGsCOG2314@1|root,COG2314@2|Bacteria,1NMNB@1224|Proteobacteria,1SIKN@1236|Gammaproteobacteria,3NP6A@468|Moraxellaceae
Evalue1.51e-09
Seed ortholog40373.F991_01779
Hectar predicted targeting categoryother localisation
TranscriptId148727
TrackFilteredModels1
ProteinId148405
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148405gene_10848Tribonema minus UTEX_B_3156 geneContig_70 23523..23795 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10848_1exon_10848_1Tribonema minus UTEX_B_3156 exonContig_70 23523..23795 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10848CDS_10848Tribonema minus UTEX_B_3156 CDSContig_70 23523..23795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148405Trimin1|148405|gw1.70.91.1Tribonema minus UTEX_B_3156 polypeptideContig_70 23523..23795 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10848 ID=mRNA_10848|Name=jgi.p|Trimin1|148405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_70:23523..23795- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGTGAGTGCGACGGTGGCTACATGACGCACAAGCCTGAGGTGCCGACCGA
CATCTGCAACTATCATAAGAAAATGGAGCTGACGGCTTTCCTGTTGTGTT
TTTTTGTAGGAGAGTCTGGTGTCGACTGGTTCTATTTGGCTGTAAACAAT
CCGTGGTACATCGTGGCCGGCGTGCTCAAGCTTATGACTTTCCGGGGATT
AGTTATCTGGTGGCTCGTCGACTGGACACGCATCTTAGTCAGTGCTTTTC
CGCATGGGAATGGCGTAGAGTTA
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protein sequence of jgi.p|Trimin1|148405

>Trimin1|148405|gw1.70.91.1 ID=Trimin1|148405|gw1.70.91.1|Name=jgi.p|Trimin1|148405|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=91bp
CECDGGYMTHKPEVPTDICNYHKKMELTAFLLCFFVGESGVDWFYLAVNN
PWYIVAGVLKLMTFRGLVIWWLVDWTRILVSAFPHGNGVEL
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mRNA from alignment at Contig_70:23523..23795-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10848 ID=mRNA_10848|Name=jgi.p|Trimin1|148405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_70:23523..23795- (Tribonema minus UTEX_B_3156 )
TGTGAGTGCGACGGTGGCTACATGACGCACAAGCCTGAGGTGCCGACCGA CATCTGCAACTATCATAAGAAAATGGAGCTGACGGCTTTCCTGTTGTGTT TTTTTGTAGGAGAGTCTGGTGTCGACTGGTTCTATTTGGCTGTAAACAAT CCGTGGTACATCGTGGCCGGCGTGCTCAAGCTTATGACTTTCCGGGGATT AGTTATCTGGTGGCTCGTCGACTGGACACGCATCTTAGTCAGTGCTTTTC CGCATGGGAATGGCGTAGAGTTA
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Coding sequence (CDS) from alignment at Contig_70:23523..23795-

>mRNA_10848 ID=mRNA_10848|Name=jgi.p|Trimin1|148405|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=273bp|location=Sequence derived from alignment at Contig_70:23523..23795- (Tribonema minus UTEX_B_3156 )
TGTGAGTGCGACGGTGGCTACATGACGCACAAGCCTGAGGTGCCGACCGA
CATCTGCAACTATCATAAGAAAATGGAGCTGACGGCTTTCCTGTTGTGTT
TTTTTGTAGGAGAGTCTGGTGTCGACTGGTTCTATTTGGCTGTAAACAAT
CCGTGGTACATCGTGGCCGGCGTGCTCAAGCTTATGACTTTCCGGGGATT
AGTTATCTGGTGGCTCGTCGACTGGACACGCATCTTAGTCAGTGCTTTTC
CGCATGGGAATGGCGTAGAGTTA
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