mRNA_10816 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|138748
Unique NamemRNA_10816
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: A0A836CN55_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN55_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.320e-38
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 MVLVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAVD 195
            MVLVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAVD
Sbjct:    1 MVLVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAVD 65          
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: A0A448Z7E2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7E2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.250e-17
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    1 MVLVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAV 192
            M LV TWL+GIGLG  +PTF+A G++ P  L+ L +  FE LGVTN +DR+KLFYLVQR+++AV
Sbjct:    1 MGLVSTWLNGIGLGSVVPTFEAAGIVSPSHLADLDVAYFESLGVTNPDDRRKLFYLVQRIKMAV 64          
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: A0A1Z5KT23_FISSO (Kinesin-like protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KT23_FISSO)

HSP 1 Score: 80.5 bits (197), Expect = 3.710e-16
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    1 MVLVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAVD 195
            M LV TWL+GIGL YA+PTF A G+  P  L++L +  FE LGV + EDR+KLF+LVQR+++A D
Sbjct:    1 MGLVATWLNGIGLSYAVPTFHAAGIDNPAALAQLDVSHFEALGVKDGEDRRKLFFLVQRIKMACD 65          
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: A0A6H5JYC8_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC8_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 6.850e-16
Identity = 35/62 (56.45%), Postives = 49/62 (79.03%), Query Frame = 1
Query:    7 LVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAV 192
            LV++WL+GIGLGYA+P F  QG+  P+ LS L + +F  LG+++  DRKKLFYL+QRV+LA+
Sbjct:    4 LVDSWLNGIGLGYAVPIFAGQGIDSPDMLSELDVVDFPELGISDQNDRKKLFYLIQRVKLAL 65          
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: A0A7S1ZZ94_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZZ94_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.800e-16
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 MVLVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQR 177
            M LV TWL+GIGLG+AIP F+A G++ P  L+ L L  +E LGV ++ +RKKLFYLVQ+
Sbjct:   13 MGLVTTWLNGIGLGHAIPAFRAAGIVTPTDLAELELHMYEDLGVKSSNERKKLFYLVQK 71          
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: A0A7S1GDQ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDQ3_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 7.010e-12
Identity = 29/61 (47.54%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    7 LVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLA 189
            ++  WL  IGLGY+IP F+A G+  P+ L +L+ ++++ +GVT  +DRK+LF LV RVR A
Sbjct:   18 IIYQWLDRIGLGYSIPMFQALGINSPQSLMKLTFEDYDAVGVTEFDDRKRLFELVHRVREA 78          
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: K0T2T7_THAOC (SAM domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T2T7_THAOC)

HSP 1 Score: 63.5 bits (153), Expect = 2.100e-10
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    7 LVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAVD 195
            LV +WLS I LG+A   F+  G++ P  L+ L L  +  LGV + E RK+LFYLVQRVR  ++
Sbjct:   12 LVASWLSSIDLGHAAANFEMAGIVTPRSLAELELVHYGPLGVKSAEHRKRLFYLVQRVRAELE 74          
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: A0A7S2PMK1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PMK1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.520e-10
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    7 LVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQR 177
            LV+TWL+  GL +A+  F+  G+  P  L +L L  FE LGVT  EDRKKLF+L+QR
Sbjct:    9 LVQTWLADAGLHHAVDNFRMAGIDSPRSLVQLELSHFEMLGVTQPEDRKKLFFLMQR 65          
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: K0THC1_THAOC (SAM domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0THC1_THAOC)

HSP 1 Score: 63.5 bits (153), Expect = 3.290e-10
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    7 LVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAVD 195
            LV +WLS I LG+A   F+  G++ P  L+ L L  +  LGV + E RK+LFYLVQRVR  ++
Sbjct:   56 LVASWLSSIDLGHAAANFEMAGIVTPRSLAELELVHYGPLGVKSAEHRKRLFYLVQRVRAELE 118          
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: A0A7S2RLA9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLA9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.470e-10
Identity = 26/61 (42.62%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   10 VETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAV 192
            V  +L  +GL YA+P FK +G+    K+S L+++ F+ LG+ + EDR+KL++ V RV++AV
Sbjct:   27 VTAFLVKLGLQYAVPRFKERGITSLPKISALTVEHFDELGIVDVEDRRKLWFFVHRVKMAV 87          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A836CN55_9STRA2.320e-38100.00SAM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A448Z7E2_9STRA2.250e-1759.38Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1Z5KT23_FISSO3.710e-1656.92Kinesin-like protein n=2 Tax=Fistulifera solaris T... [more]
A0A6H5JYC8_9PHAE6.850e-1656.45SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1ZZ94_9STRA8.800e-1657.63Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S1GDQ3_9STRA7.010e-1247.54Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
K0T2T7_THAOC2.100e-1047.62SAM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S2PMK1_9STRA2.520e-1052.63Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K0THC1_THAOC3.290e-1047.62SAM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S2RLA9_9STRA6.470e-1042.62Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_101contigContig_101:371069..371516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|138748|gw1.101.26.1
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
KEGG rclassRC02795
KEGG ReactionR00435,R00441,R00442,R00443
KEGG ModuleM00181,M00182
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG koko:K03027
DescriptionRNA polymerases D
COG categoryK
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG0202@1|root,KOG1521@2759|Eukaryota,2XAWH@2836|Bacillariophyta
Evalue3.22e-06
Seed ortholog159749.K0SHX6
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006200.2
TranscriptId139070
TrackFilteredModels1
ProteinId138748
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138748gene_10816Tribonema minus UTEX_B_3156 geneContig_101 371069..371516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138748Trimin1|138748|gw1.101.26.1Tribonema minus UTEX_B_3156 polypeptideContig_101 371069..371516 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10816_2exon_10816_2Tribonema minus UTEX_B_3156 exonContig_101 371069..371107 -
exon_10816_1exon_10816_1Tribonema minus UTEX_B_3156 exonContig_101 371361..371516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10816CDS_10816Tribonema minus UTEX_B_3156 CDSContig_101 371361..371516 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10816 ID=mRNA_10816|Name=jgi.p|Trimin1|138748|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=195bp|location=Sequence derived from alignment at Contig_101:371069..371516- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTGGTGGAGACGTGGCTGTCGGGCATAGGTTTGGGATACGCTAT
TCCCACTTTCAAGGCACAAGGCGTAATCGTGCCTGAGAAGCTCAGTCGCC
TGAGCTTGGACGAGTTCGAGGGACTGGGGGTCACCAACACGGAAGACAGG
AAGAAACTGTTCTACCTGGTCCAGCGAGTGCGCCTGGCGGTGGAC
back to top

protein sequence of jgi.p|Trimin1|138748

>Trimin1|138748|gw1.101.26.1 ID=Trimin1|138748|gw1.101.26.1|Name=jgi.p|Trimin1|138748|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=65bp
MVLVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDR
KKLFYLVQRVRLAVD
back to top

mRNA from alignment at Contig_101:371069..371516-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10816 ID=mRNA_10816|Name=jgi.p|Trimin1|138748|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=448bp|location=Sequence derived from alignment at Contig_101:371069..371516- (Tribonema minus UTEX_B_3156 )
ATGGTGCTGGTGGAGACGTGGCTGTCGGGCATAGGTTTGGGATACGCTAT TCCCACTTTCAAGGCACAAGGCGTAATCGTGCCTGAGAAGCTCAGTCGCC TGAGCTTGGACGAGTTCGAGGGACTGGGGGTCACCAACACGGAAGACAGG AAGAAAGTGAGTGAACATATGCTAGCAATGGAGGGCTGGCGAACATTTAC CTATTTTACCCCTCTGTACATGCTGCAGCAAGCTCATGTAAGCACTGGTG ATGCTGCGGCTGAGGGTAAAGCACACTGGCGTGGAAAACAGGGACTTCTG GCACTCGACGAGGAGTTTCAGGCATTCCCGTGTGAGCTTGCTCAGCAGAT TGGGAGCACCAACATGCTGATGCCTGTTCCGCTGCACCTGTGAATTCCCT GCTGTGCAGCTGTTCTACCTGGTCCAGCGAGTGCGCCTGGCGGTGGAC
back to top

Coding sequence (CDS) from alignment at Contig_101:371069..371516-

>mRNA_10816 ID=mRNA_10816|Name=jgi.p|Trimin1|138748|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=195bp|location=Sequence derived from alignment at Contig_101:371069..371516- (Tribonema minus UTEX_B_3156 )
ATGGTGCTGGTGGAGACGTGGCTGTCGGGCATAGGTTTGGGATACGCTAT
TCCCACTTTCAAGGCACAAGGCGTAATCGTGCCTGAGAAGCTCAGTCGCC
TGAGCTTGGACGAGTTCGAGGGACTGGGGGTCACCAACACGGAAGACAGG
AAGAAACTGTTCTACCTGGTCCAGCGAGTGCGCCTGGCGGTGGAC
back to top