mRNA_10816 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: A0A836CN55_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN55_9STRA) HSP 1 Score: 130 bits (326), Expect = 2.320e-38 Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 Query: 1 MVLVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAVD 195 MVLVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAVD Sbjct: 1 MVLVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAVD 65
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: A0A448Z7E2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7E2_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 2.250e-17 Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 1 Query: 1 MVLVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAV 192 M LV TWL+GIGLG +PTF+A G++ P L+ L + FE LGVTN +DR+KLFYLVQR+++AV Sbjct: 1 MGLVSTWLNGIGLGSVVPTFEAAGIVSPSHLADLDVAYFESLGVTNPDDRRKLFYLVQRIKMAV 64
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: A0A1Z5KT23_FISSO (Kinesin-like protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KT23_FISSO) HSP 1 Score: 80.5 bits (197), Expect = 3.710e-16 Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1 Query: 1 MVLVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAVD 195 M LV TWL+GIGL YA+PTF A G+ P L++L + FE LGV + EDR+KLF+LVQR+++A D Sbjct: 1 MGLVATWLNGIGLSYAVPTFHAAGIDNPAALAQLDVSHFEALGVKDGEDRRKLFFLVQRIKMACD 65
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: A0A6H5JYC8_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC8_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 6.850e-16 Identity = 35/62 (56.45%), Postives = 49/62 (79.03%), Query Frame = 1 Query: 7 LVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAV 192 LV++WL+GIGLGYA+P F QG+ P+ LS L + +F LG+++ DRKKLFYL+QRV+LA+ Sbjct: 4 LVDSWLNGIGLGYAVPIFAGQGIDSPDMLSELDVVDFPELGISDQNDRKKLFYLIQRVKLAL 65
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: A0A7S1ZZ94_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZZ94_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 8.800e-16 Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 1 Query: 1 MVLVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQR 177 M LV TWL+GIGLG+AIP F+A G++ P L+ L L +E LGV ++ +RKKLFYLVQ+ Sbjct: 13 MGLVTTWLNGIGLGHAIPAFRAAGIVTPTDLAELELHMYEDLGVKSSNERKKLFYLVQK 71
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: A0A7S1GDQ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDQ3_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 7.010e-12 Identity = 29/61 (47.54%), Postives = 44/61 (72.13%), Query Frame = 1 Query: 7 LVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLA 189 ++ WL IGLGY+IP F+A G+ P+ L +L+ ++++ +GVT +DRK+LF LV RVR A Sbjct: 18 IIYQWLDRIGLGYSIPMFQALGINSPQSLMKLTFEDYDAVGVTEFDDRKRLFELVHRVREA 78
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: K0T2T7_THAOC (SAM domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T2T7_THAOC) HSP 1 Score: 63.5 bits (153), Expect = 2.100e-10 Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 1 Query: 7 LVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAVD 195 LV +WLS I LG+A F+ G++ P L+ L L + LGV + E RK+LFYLVQRVR ++ Sbjct: 12 LVASWLSSIDLGHAAANFEMAGIVTPRSLAELELVHYGPLGVKSAEHRKRLFYLVQRVRAELE 74
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: A0A7S2PMK1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PMK1_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 2.520e-10 Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1 Query: 7 LVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQR 177 LV+TWL+ GL +A+ F+ G+ P L +L L FE LGVT EDRKKLF+L+QR Sbjct: 9 LVQTWLADAGLHHAVDNFRMAGIDSPRSLVQLELSHFEMLGVTQPEDRKKLFFLMQR 65
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: K0THC1_THAOC (SAM domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0THC1_THAOC) HSP 1 Score: 63.5 bits (153), Expect = 3.290e-10 Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 1 Query: 7 LVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAVD 195 LV +WLS I LG+A F+ G++ P L+ L L + LGV + E RK+LFYLVQRVR ++ Sbjct: 56 LVASWLSSIDLGHAAANFEMAGIVTPRSLAELELVHYGPLGVKSAEHRKRLFYLVQRVRAELE 118
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Match: A0A7S2RLA9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLA9_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 6.470e-10 Identity = 26/61 (42.62%), Postives = 43/61 (70.49%), Query Frame = 1 Query: 10 VETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAV 192 V +L +GL YA+P FK +G+ K+S L+++ F+ LG+ + EDR+KL++ V RV++AV Sbjct: 27 VTAFLVKLGLQYAVPRFKERGITSLPKISALTVEHFDELGIVDVEDRRKLWFFVHRVKMAV 87 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138748 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10816 ID=mRNA_10816|Name=jgi.p|Trimin1|138748|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=195bp|location=Sequence derived from alignment at Contig_101:371069..371516- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGTGCTGGTGGAGACGTGGCTGTCGGGCATAGGTTTGGGATACGCTATback to top protein sequence of jgi.p|Trimin1|138748 >Trimin1|138748|gw1.101.26.1 ID=Trimin1|138748|gw1.101.26.1|Name=jgi.p|Trimin1|138748|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=65bp MVLVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRback to top mRNA from alignment at Contig_101:371069..371516- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10816 ID=mRNA_10816|Name=jgi.p|Trimin1|138748|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=448bp|location=Sequence derived from alignment at Contig_101:371069..371516- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_101:371069..371516- >mRNA_10816 ID=mRNA_10816|Name=jgi.p|Trimin1|138748|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=195bp|location=Sequence derived from alignment at Contig_101:371069..371516- (Tribonema minus UTEX_B_3156 )back to top |