mRNA_10812 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351865
Unique NamemRNA_10812
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351865 vs. uniprot
Match: A0A836CP66_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP66_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.120e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 3 
Query:    3 MTNGKGSSSSSGGSHGTNSQGNNYTAGPYESSRGGVNYHY 122
            MTNGKGSSSSSGGSHGTNSQGNNYTAGPYESSRGGVNYHY
Sbjct:    1 MTNGKGSSSSSGGSHGTNSQGNNYTAGPYESSRGGVNYHY 40
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351865 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CP66_9STRA3.120e-16100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_101contigContig_101:346533..347755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351865|estExt_Genemark1.C_Ctg_1010043
Hectar predicted targeting categoryother localisation
TranscriptId352187
TrackFilteredModels1
ProteinId351865
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351865gene_10812Tribonema minus UTEX_B_3156 geneContig_101 346533..347755 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10812_1exon_10812_1Tribonema minus UTEX_B_3156 exonContig_101 346533..346634 +
exon_10812_2exon_10812_2Tribonema minus UTEX_B_3156 exonContig_101 347377..347755 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10812UTR5_10812Tribonema minus UTEX_B_3156 five_prime_UTRContig_101 346533..346534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10812CDS_10812Tribonema minus UTEX_B_3156 CDSContig_101 346535..346634 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10812UTR3_10812Tribonema minus UTEX_B_3156 three_prime_UTRContig_101 347502..347755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351865Trimin1|351865|estExt_Genemark1.C_Ctg_1010043Tribonema minus UTEX_B_3156 polypeptideContig_101 346535..347501 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10812 ID=mRNA_10812|Name=jgi.p|Trimin1|351865|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=481bp|location=Sequence derived from alignment at Contig_101:346533..347755+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGATGACGAACGGCAAGGGCAGCAGCAGCTCCAGCGGCGGATCTCACGGC
ACCAATTCTCAGGGCAACAACTACACGGCCGGGCCTTACGAGTCCTCGAG
AGGCGGAGTGAACTACCACTACTCCAACTCAAACGGGTCCTACTACTACG
CCAACAGCAACTCCAGCACCTACTACAGCGATCCCTCGGGACGTGGGCAC
TATACCCCCCCTTCTGGCAACAAGTGAACGATGTGATAATTGAGCGCCAT
CAGCAGCAGCCACCAGCAGCAGCAGTAGCACCCCTACAGGAGATGGCGGG
AGAGACAGCACCAGGACTTGCTGATAGTTGTAGGTAAAAGCGGCGCACTG
GACGCTGAAAATGCAGAAAAAGAGACAGCAGGATAGGCTAGAGAAGGAGG
TGGAGCCGCAGCTGGTTTGCCCATAGCCAAGCCTGTAGATATGTGTATGA
ATAGACGATGACGCCAGTGATGCTCTTCCCC
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protein sequence of jgi.p|Trimin1|351865

>Trimin1|351865|estExt_Genemark1.C_Ctg_1010043 ID=Trimin1|351865|estExt_Genemark1.C_Ctg_1010043|Name=jgi.p|Trimin1|351865|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=75bp
MTNGKGSSSSSGGSHGTNSQGNNYTAGPYESSRGGVNYHYSNSNGSYYYA
NSNSSTYYSDPSGRGHYTPPSGNK*
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mRNA from alignment at Contig_101:346533..347755+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10812 ID=mRNA_10812|Name=jgi.p|Trimin1|351865|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1223bp|location=Sequence derived from alignment at Contig_101:346533..347755+ (Tribonema minus UTEX_B_3156 )
CGATGACGAACGGCAAGGGCAGCAGCAGCTCCAGCGGCGGATCTCACGGC
ACCAATTCTCAGGGCAACAACTACACGGCCGGGCCTTACGAGTCCTCGAG
AGGTAAAGGTCGAGCCATGAAATCTTTTGCAGCATTTCTTTGTGCATGCT
CCTATGCCGAGCAGCAGCATCTGCTCGCCTCAGCATGTTGCTGATCGGCA
ATGGTGTATGTCGCCGGCCTGTTCGTCGGCTGGTCAGCGCTGTCAGCCCC
AGGGTATGCTTGCGAGGGGCACCTCGCTCAAAGATGAGCCGCGAAAGATA
CGTTTGCTTTCTTTCGAAGAGCTGGCGCGCTGCTGCTTTGCCTACGCTAC
CGCGTCGACGAATCTACGAGTTTCTACATTGTGCTGAGTTCACCGCCGCT
GCATCGCCAGTTTTGTGCGTCAAATCAAGTCGGCGAGATTTAGGTCAGCA
CCGCGGGATACTGGGGTCTCCGCGAGGCGCAGTGCTTTAATTACTTTAAA
TGTGCACTTTAATTACTTTAAATGTGCACACACTGACTGTCGTCACACGG
GCGGTGTCACATTTTCAGCTGTGCACACTCGGTGTCGCCACGACGGTGTC
GTATATCAACTGTGCGCATTAAATGTCGTCACGAGTGGTGTGGATCATGC
TGCTGCAACAGGCGGAGTGAGCTATCACTACTCCAACTGTGCCTTCTGAC
TGTCGTCACGAGCGATACCATATATCAATTGTGCACACTGACTTCAATTG
TGCACACTGACTGTCGCCACGAGCGGTGTCGTCTATCAAGTGTGCACTCT
GACTGTAGTCACGAACGTTGTCGAACATGGTGCTGCTGCGACAGGCGGAG
TGAACTACCACTACTCCAACTCAAACGGGTCCTACTACTACGCCAACAGC
AACTCCAGCACCTACTACAGCGATCCCTCGGGACGTGGGCACTATACCCC
CCCTTCTGGCAACAAGTGAACGATGTGATAATTGAGCGCCATCAGCAGCA
GCCACCAGCAGCAGCAGTAGCACCCCTACAGGAGATGGCGGGAGAGACAG
CACCAGGACTTGCTGATAGTTGTAGGTAAAAGCGGCGCACTGGACGCTGA
AAATGCAGAAAAAGAGACAGCAGGATAGGCTAGAGAAGGAGGTGGAGCCG
CAGCTGGTTTGCCCATAGCCAAGCCTGTAGATATGTGTATGAATAGACGA
TGACGCCAGTGATGCTCTTCCCC
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Coding sequence (CDS) from alignment at Contig_101:346533..347755+

>mRNA_10812 ID=mRNA_10812|Name=jgi.p|Trimin1|351865|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=225bp|location=Sequence derived from alignment at Contig_101:346533..347755+ (Tribonema minus UTEX_B_3156 )
ATGACGAACGGCAAGGGCAGCAGCAGCTCCAGCGGCGGATCTCACGGCAC
CAATTCTCAGGGCAACAACTACACGGCCGGGCCTTACGAGTCCTCGAGAG
GCGGAGTGAACTACCACTACTCCAACTCAAACGGGTCCTACTACTACGCC
AACAGCAACTCCAGCACCTACTACAGCGATCCCTCGGGACGTGGGCACTA
TACCCCCCCTTCTGGCAACAAGTGA
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