mRNA_10810 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351864
Unique NamemRNA_10810
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: A0A835ZI19_9STRA (Alkyl transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI19_9STRA)

HSP 1 Score: 549 bits (1414), Expect = 3.490e-197
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 1
Query:    1 MVQQLPERSATSQESTWSPHHHQHHDAKGGLRRVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGVAANSPSQSQQ 843
            MVQQLPERSATSQESTWSPHHHQHHDAKGGLRRVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGVAANSPSQSQQ
Sbjct:    1 MVQQLPERSATSQESTWSPHHHQHHDAKGGLRRVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGVAANSPSQSQQ 281          
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: W7TFP8_9STRA (Alkyl transferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFP8_9STRA)

HSP 1 Score: 246 bits (628), Expect = 9.780e-77
Identity = 126/239 (52.72%), Postives = 168/239 (70.29%), Query Frame = 1
Query:  100 VPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPD-PDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGV 813
            VPKHVAF+LDGNGRWA ++GLPR AGH EGAKRALEV++ C+ LG++ VTL+  STENW RPAAE++ ++A +E  +  N +    N IRLV+IGQ  RL   LQ LV + +RET++       + MTVCLA+SYGGRD+I +A++ +A   A G +   D+ E + +  LST   GV   PDL+IRTSGE R SNF+L++ AYSE YV+   WPDF+  DL+ A + +G R+RRFGGV
Sbjct:   98 VPKHVAFILDGNGRWAEKQGLPRGAGHREGAKRALEVLQSCQALGIRTVTLYCLSTENWSRPAAEISVILACVETTLRTNLQYAHDNRIRLVVIGQSHRLPPNLQALVSQAERETALYT-----EGMTVCLALSYGGRDDIVQASRTLAEQAAMGEIQPQDIDEALFESCLSTGVKGVDGAPDLVIRTSGEQRWSNFMLFECAYSEFYVADVLWPDFQEPDLLAALESYGMRRRRFGGV 331          
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: D8LSM4_ECTSI (Alkyl transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM4_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 2.650e-76
Identity = 133/298 (44.63%), Postives = 172/298 (57.72%), Query Frame = 1
Query:   88 GLRRVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVAD----------------------------------------------------------AQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFG 807
            GLR VP+HVAFV+DGNGRWA  R LPR  GH EGA+RA E +E CR LGV++VTL+ FSTENW+RP  EV+ +M L+E  +   R ++R+NGIRL  IG+ +RL   L+ L+ E+Q ++                                                              A      MT+CLA+SYGGR E+  AA+ +A   A GRL   D+ E  L   LST + G+PDPDL++RTSGE R+SN L+WQ+AYSEL V  KAWPDF+  DLVEAF+D+G R+RRFG
Sbjct:   67 GLRVVPRHVAFVMDGNGRWAANRNLPRRIGHAEGARRAGEAVEACRRLGVEFVTLYAFSTENWRRPTGEVSFIMDLMEETLLEQRDSLRRNGIRLTAIGELDRLPARLRSLLLEIQEDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAPPLPQPVAAPPTPTMTLCLAISYGGRSELVAAARELAAEAAAGRLDPADIDEPALARRLSTARLGIPDPDLVVRTSGESRLSNLLVWQSAYSELCVVGKAWPDFRRPDLVEAFRDYGRRRRRFG 364          
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: A0A6H5KLI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI8_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 8.810e-76
Identity = 138/302 (45.70%), Postives = 181/302 (59.93%), Query Frame = 1
Query:   88 GLRRVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETS--------------------------------------------------------------VADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFG 807
            GLR VP+HVAFV+DGNGRWA  R LPR  GH EGA+RA E +E CR LGV++VTL+ FSTENW+RPA EV+ LM L+E  +   R ++R+NGIRL +IG+ +RL   L+ L+ E+Q +++                                                              VA A  +   MT+CLA+SYGGR E+A AA+ +A+  A GRL   D+ E  L   LST++ G+PDPDL++RTSGE R+SN L+WQ+AYSEL V  KAWPDF+  DLVEAF+D+G R+RRFG
Sbjct:  314 GLRVVPRHVAFVMDGNGRWAVSRNLPRRTGHAEGARRAGEAVEACRRLGVEFVTLYAFSTENWRRPAGEVSFLMDLMEETLLEQRDSLRRNGIRLTVIGELDRLPARLRSLLLEIQEDSNXXXXXXXXXXXXXXXXXXXXGVPPSVAIPVAXXXXXXXXXXXXXXXXXXXXXXIAPPLPKQPVAAAPPTAT-MTLCLAISYGGRSELAAAARELAVEAAAGRLDPADIDEPALARRLSTSRLGIPDPDLVVRTSGESRLSNLLVWQSAYSELCVVGKAWPDFRRPDLVEAFRDYGRRRRRFG 614          
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: A0A7V5R8L6_9DELT (Isoprenyl transferase n=1 Tax=Desulfobulbaceae bacterium TaxID=2053307 RepID=A0A7V5R8L6_9DELT)

HSP 1 Score: 239 bits (610), Expect = 2.060e-75
Identity = 123/243 (50.62%), Postives = 163/243 (67.08%), Query Frame = 1
Query:   91 LRRVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGVAA 819
            +R +P H+A ++DGNGRWA  R  PR AGH  G      V+E+ RE+GV+Y+TL+ FSTENW+RP AEV  LMALL   +E+  R M +N IRL  IGQ+ERL   +  ++E+V +ET          +MT+ LA+SYGGRDE+ RA + +A   A G++  D ++EE+L  YL T  AG PDPDL+IRT GEHR+SNFLLWQ +Y+ELY +   WPDF+   L+EA   +G RQRRFG   A
Sbjct:    9 IRLIPSHIAIIMDGNGRWAEERNRPRLAGHKAGVDSVRAVVEIAREIGVRYLTLYAFSTENWQRPGAEVKGLMALLRTYLESELRTMLKNDIRLFCIGQRERLPADVLSVLEQVMQETDHCR------EMTLNLALSYGGRDEMMRAIRKMAHKCATGQIDPDALSEELLGQYLDT--AGQPDPDLLIRTGGEHRLSNFLLWQVSYAELYFTETKWPDFRKQQLLEAVATYGRRQRRFGKTGA 243          
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: A0A6J4FLM4_9PROT (Isoprenyl transferase n=2 Tax=Magnetospirillum TaxID=13134 RepID=A0A6J4FLM4_9PROT)

HSP 1 Score: 237 bits (604), Expect = 1.470e-74
Identity = 126/238 (52.94%), Postives = 154/238 (64.71%), Query Frame = 1
Query:  100 VPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGV 813
             P HVA ++DGNGRWA  RGLPRTAGH +GA+     +E  RELGV Y+TL+ FS+ENWKRPA EV  LM LL   +     ++ +NGIRL +IG + RLS  +  L+EE + +T      Q    +T+ LA+SYGGR EI  AA+AVA  VAEGR+  D + E  L   LST  A +PDPDL+IRTSGE RISNFLLWQ AYSEL      WPDF  AD   A +D+  R RRFG  
Sbjct:   13 APVHVAIIMDGNGRWAKARGLPRTAGHKKGAESVRRAVETARELGVSYLTLYAFSSENWKRPAGEVTDLMGLLRLYLRNEVNSLHKNGIRLRIIGDRSRLSADIVSLIEESEAKT------QDNKALTLVLALSYGGRQEIVEAARAVARQVAEGRIPVDAIDEATLASNLST--ADIPDPDLVIRTSGEQRISNFLLWQCAYSELVFLDVLWPDFSRADFEAAIRDYHGRDRRFGAA 242          
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: A0A0P1I837_9RHOB (Isoprenyl transferase n=8 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0P1I837_9RHOB)

HSP 1 Score: 235 bits (600), Expect = 5.710e-74
Identity = 125/237 (52.74%), Postives = 161/237 (67.93%), Query Frame = 1
Query:  103 PKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGV 813
            P+HVA ++DGNGRWA  RG PR  GH  GAKR  EV+E C  LGV+Y+T+F FSTENWKR  AEVA LM+L    I    R +++NGIR+  IG + RL + L  L++ ++ ET      +  D + + +A++YGGRDE+ARA K +A  VAEGRL  +DV EE L  YL T    +PDPDL+IRTSGE RISNFLLWQ+AYSE       WPDF AA++    ++FG+R+RRFG V
Sbjct:   13 PRHVAIIMDGNGRWAQARGRPRLFGHQAGAKRVREVVEACPGLGVKYLTVFAFSTENWKRTQAEVAGLMSLFRRYIIKETRTLKENGIRVRFIGDRVRLDSKLISLMDALEEET------KENDLVHLTVALNYGGRDEVARATKRLARDVAEGRLRPEDVDEETLPKYLDTHV--LPDPDLVIRTSGEARISNFLLWQSAYSEYEFIDTLWPDFTAAEMERLCRNFGSRERRFGAV 241          
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: A0A4P5VVJ8_9DELT (Isoprenyl transferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A4P5VVJ8_9DELT)

HSP 1 Score: 234 bits (596), Expect = 2.090e-73
Identity = 120/239 (50.21%), Postives = 156/239 (65.27%), Query Frame = 1
Query:   97 RVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGV 813
            +VP HVA ++DGNGRWA  RG PR  GH EGA+   ++ + CRELG + +TL++FSTENWKRP  EV +LM LL   +   RR +  NGIRL  +GQ +RL   ++  ++E+        A +   QM + LA+SYG R EI  AAKA+A   A GRL  D + E      L T  AG+PDPDL+IRTSGE RISNF+LWQ AY+E+YV+   WPDF+   L+EAF+ FG R+RRFG  
Sbjct:    2 KVPTHVAIIMDGNGRWAESRGWPRVRGHEEGAESVRDITQACRELGCKALTLYSFSTENWKRPEDEVGALMGLLARYLTQERREILDNGIRLNAVGQLDRLPLAVRAALKELMH------ASRDNKQMVLTLALSYGSRQEIVEAAKALAKKAASGRLRPDQIDEAAFAAELQT--AGLPDPDLLIRTSGELRISNFMLWQLAYAEIYVTETLWPDFRKPQLIEAFEAFGRRERRFGAT 232          
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: A0A5P9GE94_9RHOB (Isoprenyl transferase n=10 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A5P9GE94_9RHOB)

HSP 1 Score: 233 bits (594), Expect = 4.620e-73
Identity = 126/248 (50.81%), Postives = 161/248 (64.92%), Query Frame = 1
Query:   76 DAKGGLRRVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGVAA 819
            D +  L   P+HVA ++DGNGRWA  RG PR  GH  GA+R  EV+E C  LG++Y+T+F FSTENWKR   EVA LM L    I    R +  NGIR+  IG + RL + L  L++ ++ ET      ++ D + + +A++YGGRDE+ARA K +A  VAEGRL  ++V EE L  YL T    +PDPDL+IRTSGE RISNFLLWQ+AYSE       WPDF AA+L    Q++GTR RRFG V A
Sbjct:    4 DPQTELESGPRHVAIIMDGNGRWAQARGRPRLFGHHAGARRVREVVEACPGLGIKYLTVFAFSTENWKRTQVEVAGLMNLFRRYIIKETRTLADNGIRVRFIGDRVRLDSKLIELMDSLEEET------KNNDLVHLTVALNYGGRDEVARATKRLARDVAEGRLKPEEVDEETLPKYLDTRV--LPDPDLVIRTSGEARISNFLLWQSAYSEYEFIDTLWPDFTAAELARLCQNYGTRDRRFGAVVA 243          
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: UPI0010F95770 (polyprenyl diphosphate synthase n=1 Tax=Marimonas lutisalis TaxID=2545756 RepID=UPI0010F95770)

HSP 1 Score: 233 bits (594), Expect = 4.920e-73
Identity = 125/248 (50.40%), Postives = 161/248 (64.92%), Query Frame = 1
Query:   76 DAKGGLRRVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGVAA 819
            D  GG  R P+HVA ++DGNGRWA  RG PR  GH  GAKR  E++E C +LGV+Y+T+F FSTENWKR   EVA LM+L    I    RA++  G+R+  IG + RL   LQ L++E++  T+        D++ + +A++YGGRDE+ARA K +A  VA GRL  + V EE L  YL T    +PDPDL+IRTSGE RISNFLLWQ+AY+E       WPDF A    +    +GTR+RRFGGV A
Sbjct:    8 DRAGG--RGPRHVAIIMDGNGRWAQARGRPRLFGHHAGAKRVREIVEACPDLGVKYLTIFAFSTENWKRTQVEVAGLMSLFRRYITKEARALKAEGVRVRFIGDRVRLDKKLQALMDELEELTA------GNDRVHLTIALNYGGRDEVARATKRLAQDVAAGRLDPETVDEETLPKYLDTCV--LPDPDLVIRTSGEARISNFLLWQSAYAEYEFIDTLWPDFSAQIFADLVLAYGTRERRFGGVKA 245          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZI19_9STRA3.490e-197100.00Alkyl transferase n=1 Tax=Tribonema minus TaxID=30... [more]
W7TFP8_9STRA9.780e-7752.72Alkyl transferase n=1 Tax=Nannochloropsis gaditana... [more]
D8LSM4_ECTSI2.650e-7644.63Alkyl transferase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KLI8_9PHAE8.810e-7645.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7V5R8L6_9DELT2.060e-7550.62Isoprenyl transferase n=1 Tax=Desulfobulbaceae bac... [more]
A0A6J4FLM4_9PROT1.470e-7452.94Isoprenyl transferase n=2 Tax=Magnetospirillum Tax... [more]
A0A0P1I837_9RHOB5.710e-7452.74Isoprenyl transferase n=8 Tax=Roseobacteraceae Tax... [more]
A0A4P5VVJ8_9DELT2.090e-7350.21Isoprenyl transferase n=1 Tax=Deltaproteobacteria ... [more]
A0A5P9GE94_9RHOB4.620e-7350.81Isoprenyl transferase n=10 Tax=Roseobacteraceae Ta... [more]
UPI0010F957704.920e-7350.40polyprenyl diphosphate synthase n=1 Tax=Marimonas ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_101contigContig_101:339878..343897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351864|estExt_Genemark1.C_Ctg_1010041
GOsGO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617
Descriptionpolyprenol biosynthetic process
COG categoryI
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0020@1|root,KOG1602@2759|Eukaryota
Evalue4.05e-77
Seed ortholog2880.D8LSM4
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDecaprenyl diphosphate synthase-like
Ec32 orthologEc-09_002180.1
TranscriptId352186
TrackFilteredModels1
ProteinId351864
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351864gene_10810Tribonema minus UTEX_B_3156 geneContig_101 339878..343897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351864Trimin1|351864|estExt_Genemark1.C_Ctg_1010041Tribonema minus UTEX_B_3156 polypeptideContig_101 339878..343890 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10810_1exon_10810_1Tribonema minus UTEX_B_3156 exonContig_101 339878..340020 +
exon_10810_2exon_10810_2Tribonema minus UTEX_B_3156 exonContig_101 340151..340247 +
exon_10810_3exon_10810_3Tribonema minus UTEX_B_3156 exonContig_101 341029..341265 +
exon_10810_4exon_10810_4Tribonema minus UTEX_B_3156 exonContig_101 341533..341659 +
exon_10810_5exon_10810_5Tribonema minus UTEX_B_3156 exonContig_101 342941..343035 +
exon_10810_6exon_10810_6Tribonema minus UTEX_B_3156 exonContig_101 343744..343897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10810CDS_10810Tribonema minus UTEX_B_3156 CDSContig_101 339878..340020 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10810UTR3_10810Tribonema minus UTEX_B_3156 three_prime_UTRContig_101 343891..343897 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10810 ID=mRNA_10810|Name=jgi.p|Trimin1|351864|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=853bp|location=Sequence derived from alignment at Contig_101:339878..343897+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACAACAGTTGCCAGAGCGAAGCGCCACCTCCCAGGAGAGCACGTG
GTCGCCGCATCACCACCAGCATCACGATGCCAAGGGCGGCCTGCGTAGAG
TGCCCAAGCACGTGGCCTTCGTGCTCGACGGCAACGGCAGATGGGCGACT
CGGCGTGGACTGCCACGCACAGCCGGACATATTGAGGGCGCTAAGAGAGC
GCTGGAGGTCATTGAGCTTTGTCGTGAATTAGGCGTACAGTATGTCACGC
TCTTCACGTTCTCTACGGAGAACTGGAAGCGCCCCGCCGCCGAAGTGGCC
AGCCTCATGGCTCTGCTGGAGCACAACATAGAGGCCAACAGGCGCGCCAT
GCGCCAGAATGGCATACGGCTCGTTCTGATTGGTCAGAAGGAGAGGTTGA
GCACTGGTCTGCAGTGCCTGGTGGAGGAGGTGCAGCGGGAGACCAGCGTG
GCGGATGCTCAGCAAAGCGGAGACCAGATGACCGTGTGCCTGGCGGTGAG
CTATGGCGGGAGGGACGAGATTGCACGCGCAGCCAAGGCCGTGGCGCTGG
CGGTGGCGGAGGGCAGGCTGAGCGCTGATGACGTTACCGAGGAGGTGCTA
CAAGGCTACCTCAGCACAACGCAGGCGGGCGTGCCTGACCCTGACCTTAT
CATCCGCACCTCCGGCGAACACCGCATCAGCAACTTCCTACTATGGCAGG
CTGCATACTCGGAGCTGTACGTGAGCGCGAAAGCATGGCCAGACTTCAAG
GCAGCAGACCTAGTAGAGGCGTTCCAAGACTTTGGCACGCGGCAGCGCCG
CTTTGGCGGTGTTGCCGCCAACAGCCCTTCGCAATCACAACAATGAGCAA
CAC
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protein sequence of jgi.p|Trimin1|351864

>Trimin1|351864|estExt_Genemark1.C_Ctg_1010041 ID=Trimin1|351864|estExt_Genemark1.C_Ctg_1010041|Name=jgi.p|Trimin1|351864|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=282bp
MVQQLPERSATSQESTWSPHHHQHHDAKGGLRRVPKHVAFVLDGNGRWAT
RRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVA
SLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSV
ADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVL
QGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFK
AADLVEAFQDFGTRQRRFGGVAANSPSQSQQ*
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mRNA from alignment at Contig_101:339878..343897+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10810 ID=mRNA_10810|Name=jgi.p|Trimin1|351864|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4020bp|location=Sequence derived from alignment at Contig_101:339878..343897+ (Tribonema minus UTEX_B_3156 )
ATGGTACAACAGTTGCCAGAGCGAAGCGCCACCTCCCAGGAGAGCACGTG GTCGCCGCATCACCACCAGCATCACGATGCCAAGGGCGGCCTGCGTAGAG TGCCCAAGCACGTGGCCTTCGTGCTCGACGGCAACGGCAGATGGTAAGCC AGCAAGCTTTCTCTTGTCGTGTAGCATCAGGTGCTGCGATGAAACGTTAT GCCTGATGCGCGACACTTTGGACCCTGCTGTGCTTTCACACGTGTCTGAC GTTCTTCTCATTGCGAATTGCAGGGCGACTCGGCGTGGACTGCCACGCAC AGCCGGACATATTGAGGGCGCTAAGAGAGCGCTGGAGGTCATTGAGCTTT GTCGTGAATTAGGCGTACAGGTGAGCGCTCTGATTGCTGGTGGTTGGTGG AAGCGATTTGGCTTGCTTGAAAGCAGGTGCTGCAGCACCAAAGCGACTGA GAGAGCTACGTGGATTGACAAACACACTAGGTCACGAAAGCCACATACAC CAATTTATGCCGAGATATGTTCTCAAACACTGCAGGGCAGCGAATGAAGT TGGCAGCACTGCGGTTCGTCCATACCTGTCTGCACCCCCAGGCTATACTC CAACACTTGAAGTTATAACCCGCACAGACTCAGAGCTTTGCCCCTTCCCA TTTTCATGGTGTCCTGTATGAACGGTAGTGGCACACGGTGTGCCTCGATC ATCAATCGCGCCATGCTGCAATCATGTGGGCGGCAGAGCGTTCAGTGAAT GTACAGTAGAAGGGTAGAAGGGAATCAAACTCTTGCGCTGAACTCTTGTG CGAGCACCCTGCCCATGCCTGGACATCTCTGGCTACACCATCTGCAACAA CTGAACACGAAACCGACTGTAAGCCACGTTGGCACAGCGCCATGTGCCCT AGTGGCTGTCTCACTTGCCCCCATTACATAGAAGTATGCAACATCATTGC AAGCGGAGTAACGCTCAAACCTTGTTCTACTGTGTGACTCGGTGCTGCCA GATGTACACCATGCACGCACAGTGGCTTTGATGGGAGGCATGCTGTCAAA TGCATCACCACCCGCAACTGTGCTTCAGGTTACGCGTACACTCGTATTTG CTTGGCAGCTGATTGTGATGCATTGGCCATTCCGTTCCCGATGCATTGCA GTATGTCACGCTCTTCACGTTCTCTACGGAGAACTGGAAGCGCCCCGCCG CCGAAGTGGCCAGCCTCATGGCTCTGCTGGAGCACAACATAGAGGCCAAC AGGCGCGCCATGCGCCAGAATGGCATACGGCTCGTTCTGATTGGTCAGAA GGAGAGGTTGAGCACTGGTCTGCAGTGCCTGGTGGAGGAGGTGCAGCGGG AGACCAGCGTGGCGGATGCTCAGCAAAGCGGAGACCAGGTACTTCAACTT GGACTGCTTTGTTGAGTACTTCAACCTGAGGTTTGTGGATACTGCGCACT GGATCTCAGCATATGCTCAGAAGACGCGCTGAGCTTCACAACGGAGCTTG CAGACCCTCACTGTCCATGCAGTGATTAGTGGACTATGATTGCGGGCATC CCAGCGTGACTTACTACAATACATACAGTTTGAAGCAGGCTGTCTGTTTT AGTGGCAGCGATATCAACCGCAGTGCTTCCTTTGTGCGCCTTTCTGGCGT GTCAGATGACCGTGTGCCTGGCGGTGAGCTATGGCGGGAGGGACGAGATT GCACGCGCAGCCAAGGCCGTGGCGCTGGCGGTGGCGGAGGGCAGGCTGAG CGCTGATGACGTTACCGAGGAGGTGCTACAAGGTACGTAGGCATGCGTGC ACGTTGACTTCGGGTTAGGGCAGGTTGAGCGTTGATGATGGCACATCGCT GATACTGTCATTGAGGCAATGCTGCAAGGTATGTAGCAACACGTGCACTT TGACCTAGGGTTAGGGCAGGCTGAGCGTCGATGACGTCATTGAGGCGATG CTGCAAGGTATGTAGGCATGCGTATGTGTCTAGGCAATGGTTAGGGCAGG TTGAACGCTGAGGATGGCACAGTTAGGGCAGCTTGAGCGCTGGGAATTGA CACTGAGCGGGCTCTGCCACGCATGTAGTCTAGGCACATGCGCATGTTTC AGCTAGAGTTGGGGCAGGCTAAGTGCTGATGACGTCTAGGTATGTAGGCA CGCAAGTGTGCACGTATCTAATCTAGGGTCAGGGCAGGTTGCGTGTTTGA GGATGTCAGGGCATGTAGGCATGCGCATATACTGTCTTATCTAGGGTTAG GGCCAAGTTGGACGTGACCCACATGCCATGACAGTGTGAGAGCATTGGGC TCAATGTGTCTGCATCTACGGTTGGGGTTGAGGATATGGTACACAGCTTA TGCAGAGGCTGAGCCTTTTGCCGACGTAGCTAGCCACATCTGTTTGTTTG GCACAGTCTTGGAAAACGGTGTTGGCACAGGACAGAGCGGTTCTGGCGCG GGGAGGCTGAGGACTATGCGCACAGTTTGGGTTGTACATGGGTGCTGCCT ACAGCTTGCTGCTGCACCTTATCTGCCGTACACGCGTTGCATGATGCTAG AGCTCTACGATCTTGTGATTCGTTGATATGTACTGCAAGGGTGCGATTTC ACACTTGCAGCAAATGCGGCAGCAGCAGCTGCAGCTCTGCAGTCAGGGTT AGGTCAAAGGGTAAGGTTCGTGTTGAGGGCAAGGTAGGGTTGAAGTTAGG GCTTGCAGCGGTCGCATACAGGTCTGCACCAGCATGCTTCTGCGCTGAAT ATGCGTCTGACACAGATGGGACTGCAGCAGAGGTACAAGGCGGATACCAG CGAGTGTGTTGGAGTGCGTGGAGAGGCGGGCTAGGTACAACAGTGTATGT GTGCACTTCATGTTTGTACTTCAAAGTACGTAGACAATAGTAGGCACGTA GTTGGGAGTGTGCGTCAAAGAAGCACAAGCGCCGCCAACTCTTTTACTGC AGCTTCACTCAAGGCTCTCCGGCAGGTTTGAGGCTGCCACTTAAACTGTA ACTGCTACATTTCACTGTGCCCTTACTTTTGCCAATGCACTGCTCGGCTC GCCTCCCTCGCAGGCTACCTCAGCACAACGCAGGCGGGCGTGCCTGACCC TGACCTTATCATCCGCACCTCCGGCGAACACCGCATCAGCAACTTCCTAC TATGGCAGGTACGTGCATGCGTGTGTGAGGCTGAGAACGCAGCGGGTCCG TTGACGCTGCCCCCCCCCCCCCCCCCCCCCCCGCTATTCGTTGCTCGATT CGTTGATTGTCTGCCTGCTGGTCAGAGCCCAAGACGCAGGGAAGGCGCAT TGAATACTGCTGGACCTAACCCCCCAACCCTGATGTGGCAACCCTAGCTC TGGTCCATCGCCGAAGCCCTAACCCTCAATTCTGACCTGGCTTTTCACTA TTCCCTCAAGGAATACACCATCACTGGTGGGCAGGGGCTGGTGCTTGCGC TGTGAATGCTCAAAACTAAGGTTTGGCAGAAGCGTTGAAAATAACTTGGG GGCATGCATGGATTGCATGACATCACTGTTAAGTACTAGAAGTCCAGCTT CAGTCAGATCAGTCAGATCACGTCCCAATGTTTGGAACGCGAGTTCCTCA TCAAAGATGGCAAGTCGACCAGACAGCTTGATGAGTCATGAGTCAACGTG AGTCACTCACCTCGACGAGTCAAATTTGAATCGCCAGCGTGCACTGTTCT TCCAATTGTCGCCATTGCACTTGCGCGCGCGATGACCCCTTCTATTCACT CATACGGCATACCACGGCCCGCACTCCTGCACTAGACTAGGTGATGTTGC CGCATCACCGCCACTTACTCCCCTGTTGCATCTCATTACCGCCGCTGCGT CATTGCGCACCTGCAGGCTGCATACTCGGAGCTGTACGTGAGCGCGAAAG CATGGCCAGACTTCAAGGCAGCAGACCTAGTAGAGGCGTTCCAAGACTTT GGCACGCGGCAGCGCCGCTTTGGCGGTGTTGCCGCCAACAGCCCTTCGCA ATCACAACAATGAGCAACAC
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Coding sequence (CDS) from alignment at Contig_101:339878..343897+

>mRNA_10810 ID=mRNA_10810|Name=jgi.p|Trimin1|351864|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=846bp|location=Sequence derived from alignment at Contig_101:339878..343897+ (Tribonema minus UTEX_B_3156 )
ATGGTACAACAGTTGCCAGAGCGAAGCGCCACCTCCCAGGAGAGCACGTG
GTCGCCGCATCACCACCAGCATCACGATGCCAAGGGCGGCCTGCGTAGAG
TGCCCAAGCACGTGGCCTTCGTGCTCGACGGCAACGGCAGATGGGCGACT
CGGCGTGGACTGCCACGCACAGCCGGACATATTGAGGGCGCTAAGAGAGC
GCTGGAGGTCATTGAGCTTTGTCGTGAATTAGGCGTACAGTATGTCACGC
TCTTCACGTTCTCTACGGAGAACTGGAAGCGCCCCGCCGCCGAAGTGGCC
AGCCTCATGGCTCTGCTGGAGCACAACATAGAGGCCAACAGGCGCGCCAT
GCGCCAGAATGGCATACGGCTCGTTCTGATTGGTCAGAAGGAGAGGTTGA
GCACTGGTCTGCAGTGCCTGGTGGAGGAGGTGCAGCGGGAGACCAGCGTG
GCGGATGCTCAGCAAAGCGGAGACCAGATGACCGTGTGCCTGGCGGTGAG
CTATGGCGGGAGGGACGAGATTGCACGCGCAGCCAAGGCCGTGGCGCTGG
CGGTGGCGGAGGGCAGGCTGAGCGCTGATGACGTTACCGAGGAGGTGCTA
CAAGGCTACCTCAGCACAACGCAGGCGGGCGTGCCTGACCCTGACCTTAT
CATCCGCACCTCCGGCGAACACCGCATCAGCAACTTCCTACTATGGCAGG
CTGCATACTCGGAGCTGTACGTGAGCGCGAAAGCATGGCCAGACTTCAAG
GCAGCAGACCTAGTAGAGGCGTTCCAAGACTTTGGCACGCGGCAGCGCCG
CTTTGGCGGTGTTGCCGCCAACAGCCCTTCGCAATCACAACAATGA
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