mRNA_10810 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: A0A835ZI19_9STRA (Alkyl transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI19_9STRA) HSP 1 Score: 549 bits (1414), Expect = 3.490e-197 Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 1
Query: 1 MVQQLPERSATSQESTWSPHHHQHHDAKGGLRRVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGVAANSPSQSQQ 843
MVQQLPERSATSQESTWSPHHHQHHDAKGGLRRVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGVAANSPSQSQQ
Sbjct: 1 MVQQLPERSATSQESTWSPHHHQHHDAKGGLRRVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGVAANSPSQSQQ 281
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: W7TFP8_9STRA (Alkyl transferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFP8_9STRA) HSP 1 Score: 246 bits (628), Expect = 9.780e-77 Identity = 126/239 (52.72%), Postives = 168/239 (70.29%), Query Frame = 1
Query: 100 VPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPD-PDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGV 813
VPKHVAF+LDGNGRWA ++GLPR AGH EGAKRALEV++ C+ LG++ VTL+ STENW RPAAE++ ++A +E + N + N IRLV+IGQ RL LQ LV + +RET++ + MTVCLA+SYGGRD+I +A++ +A A G + D+ E + + LST GV PDL+IRTSGE R SNF+L++ AYSE YV+ WPDF+ DL+ A + +G R+RRFGGV
Sbjct: 98 VPKHVAFILDGNGRWAEKQGLPRGAGHREGAKRALEVLQSCQALGIRTVTLYCLSTENWSRPAAEISVILACVETTLRTNLQYAHDNRIRLVVIGQSHRLPPNLQALVSQAERETALYT-----EGMTVCLALSYGGRDDIVQASRTLAEQAAMGEIQPQDIDEALFESCLSTGVKGVDGAPDLVIRTSGEQRWSNFMLFECAYSEFYVADVLWPDFQEPDLLAALESYGMRRRRFGGV 331
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: D8LSM4_ECTSI (Alkyl transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM4_ECTSI) HSP 1 Score: 246 bits (627), Expect = 2.650e-76 Identity = 133/298 (44.63%), Postives = 172/298 (57.72%), Query Frame = 1
Query: 88 GLRRVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVAD----------------------------------------------------------AQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFG 807
GLR VP+HVAFV+DGNGRWA R LPR GH EGA+RA E +E CR LGV++VTL+ FSTENW+RP EV+ +M L+E + R ++R+NGIRL IG+ +RL L+ L+ E+Q ++ A MT+CLA+SYGGR E+ AA+ +A A GRL D+ E L LST + G+PDPDL++RTSGE R+SN L+WQ+AYSEL V KAWPDF+ DLVEAF+D+G R+RRFG
Sbjct: 67 GLRVVPRHVAFVMDGNGRWAANRNLPRRIGHAEGARRAGEAVEACRRLGVEFVTLYAFSTENWRRPTGEVSFIMDLMEETLLEQRDSLRRNGIRLTAIGELDRLPARLRSLLLEIQEDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAPPLPQPVAAPPTPTMTLCLAISYGGRSELVAAARELAAEAAAGRLDPADIDEPALARRLSTARLGIPDPDLVVRTSGESRLSNLLVWQSAYSELCVVGKAWPDFRRPDLVEAFRDYGRRRRRFG 364
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: A0A6H5KLI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI8_9PHAE) HSP 1 Score: 251 bits (642), Expect = 8.810e-76 Identity = 138/302 (45.70%), Postives = 181/302 (59.93%), Query Frame = 1
Query: 88 GLRRVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETS--------------------------------------------------------------VADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFG 807
GLR VP+HVAFV+DGNGRWA R LPR GH EGA+RA E +E CR LGV++VTL+ FSTENW+RPA EV+ LM L+E + R ++R+NGIRL +IG+ +RL L+ L+ E+Q +++ VA A + MT+CLA+SYGGR E+A AA+ +A+ A GRL D+ E L LST++ G+PDPDL++RTSGE R+SN L+WQ+AYSEL V KAWPDF+ DLVEAF+D+G R+RRFG
Sbjct: 314 GLRVVPRHVAFVMDGNGRWAVSRNLPRRTGHAEGARRAGEAVEACRRLGVEFVTLYAFSTENWRRPAGEVSFLMDLMEETLLEQRDSLRRNGIRLTVIGELDRLPARLRSLLLEIQEDSNXXXXXXXXXXXXXXXXXXXXGVPPSVAIPVAXXXXXXXXXXXXXXXXXXXXXXIAPPLPKQPVAAAPPTAT-MTLCLAISYGGRSELAAAARELAVEAAAGRLDPADIDEPALARRLSTSRLGIPDPDLVVRTSGESRLSNLLVWQSAYSELCVVGKAWPDFRRPDLVEAFRDYGRRRRRFG 614
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: A0A7V5R8L6_9DELT (Isoprenyl transferase n=1 Tax=Desulfobulbaceae bacterium TaxID=2053307 RepID=A0A7V5R8L6_9DELT) HSP 1 Score: 239 bits (610), Expect = 2.060e-75 Identity = 123/243 (50.62%), Postives = 163/243 (67.08%), Query Frame = 1
Query: 91 LRRVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGVAA 819
+R +P H+A ++DGNGRWA R PR AGH G V+E+ RE+GV+Y+TL+ FSTENW+RP AEV LMALL +E+ R M +N IRL IGQ+ERL + ++E+V +ET +MT+ LA+SYGGRDE+ RA + +A A G++ D ++EE+L YL T AG PDPDL+IRT GEHR+SNFLLWQ +Y+ELY + WPDF+ L+EA +G RQRRFG A
Sbjct: 9 IRLIPSHIAIIMDGNGRWAEERNRPRLAGHKAGVDSVRAVVEIAREIGVRYLTLYAFSTENWQRPGAEVKGLMALLRTYLESELRTMLKNDIRLFCIGQRERLPADVLSVLEQVMQETDHCR------EMTLNLALSYGGRDEMMRAIRKMAHKCATGQIDPDALSEELLGQYLDT--AGQPDPDLLIRTGGEHRLSNFLLWQVSYAELYFTETKWPDFRKQQLLEAVATYGRRQRRFGKTGA 243
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: A0A6J4FLM4_9PROT (Isoprenyl transferase n=2 Tax=Magnetospirillum TaxID=13134 RepID=A0A6J4FLM4_9PROT) HSP 1 Score: 237 bits (604), Expect = 1.470e-74 Identity = 126/238 (52.94%), Postives = 154/238 (64.71%), Query Frame = 1
Query: 100 VPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGV 813
P HVA ++DGNGRWA RGLPRTAGH +GA+ +E RELGV Y+TL+ FS+ENWKRPA EV LM LL + ++ +NGIRL +IG + RLS + L+EE + +T Q +T+ LA+SYGGR EI AA+AVA VAEGR+ D + E L LST A +PDPDL+IRTSGE RISNFLLWQ AYSEL WPDF AD A +D+ R RRFG
Sbjct: 13 APVHVAIIMDGNGRWAKARGLPRTAGHKKGAESVRRAVETARELGVSYLTLYAFSSENWKRPAGEVTDLMGLLRLYLRNEVNSLHKNGIRLRIIGDRSRLSADIVSLIEESEAKT------QDNKALTLVLALSYGGRQEIVEAARAVARQVAEGRIPVDAIDEATLASNLST--ADIPDPDLVIRTSGEQRISNFLLWQCAYSELVFLDVLWPDFSRADFEAAIRDYHGRDRRFGAA 242
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: A0A0P1I837_9RHOB (Isoprenyl transferase n=8 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0P1I837_9RHOB) HSP 1 Score: 235 bits (600), Expect = 5.710e-74 Identity = 125/237 (52.74%), Postives = 161/237 (67.93%), Query Frame = 1
Query: 103 PKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGV 813
P+HVA ++DGNGRWA RG PR GH GAKR EV+E C LGV+Y+T+F FSTENWKR AEVA LM+L I R +++NGIR+ IG + RL + L L++ ++ ET + D + + +A++YGGRDE+ARA K +A VAEGRL +DV EE L YL T +PDPDL+IRTSGE RISNFLLWQ+AYSE WPDF AA++ ++FG+R+RRFG V
Sbjct: 13 PRHVAIIMDGNGRWAQARGRPRLFGHQAGAKRVREVVEACPGLGVKYLTVFAFSTENWKRTQAEVAGLMSLFRRYIIKETRTLKENGIRVRFIGDRVRLDSKLISLMDALEEET------KENDLVHLTVALNYGGRDEVARATKRLARDVAEGRLRPEDVDEETLPKYLDTHV--LPDPDLVIRTSGEARISNFLLWQSAYSEYEFIDTLWPDFTAAEMERLCRNFGSRERRFGAV 241
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: A0A4P5VVJ8_9DELT (Isoprenyl transferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A4P5VVJ8_9DELT) HSP 1 Score: 234 bits (596), Expect = 2.090e-73 Identity = 120/239 (50.21%), Postives = 156/239 (65.27%), Query Frame = 1
Query: 97 RVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGV 813
+VP HVA ++DGNGRWA RG PR GH EGA+ ++ + CRELG + +TL++FSTENWKRP EV +LM LL + RR + NGIRL +GQ +RL ++ ++E+ A + QM + LA+SYG R EI AAKA+A A GRL D + E L T AG+PDPDL+IRTSGE RISNF+LWQ AY+E+YV+ WPDF+ L+EAF+ FG R+RRFG
Sbjct: 2 KVPTHVAIIMDGNGRWAESRGWPRVRGHEEGAESVRDITQACRELGCKALTLYSFSTENWKRPEDEVGALMGLLARYLTQERREILDNGIRLNAVGQLDRLPLAVRAALKELMH------ASRDNKQMVLTLALSYGSRQEIVEAAKALAKKAASGRLRPDQIDEAAFAAELQT--AGLPDPDLLIRTSGELRISNFMLWQLAYAEIYVTETLWPDFRKPQLIEAFEAFGRRERRFGAT 232
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: A0A5P9GE94_9RHOB (Isoprenyl transferase n=10 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A5P9GE94_9RHOB) HSP 1 Score: 233 bits (594), Expect = 4.620e-73 Identity = 126/248 (50.81%), Postives = 161/248 (64.92%), Query Frame = 1
Query: 76 DAKGGLRRVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGVAA 819
D + L P+HVA ++DGNGRWA RG PR GH GA+R EV+E C LG++Y+T+F FSTENWKR EVA LM L I R + NGIR+ IG + RL + L L++ ++ ET ++ D + + +A++YGGRDE+ARA K +A VAEGRL ++V EE L YL T +PDPDL+IRTSGE RISNFLLWQ+AYSE WPDF AA+L Q++GTR RRFG V A
Sbjct: 4 DPQTELESGPRHVAIIMDGNGRWAQARGRPRLFGHHAGARRVREVVEACPGLGIKYLTVFAFSTENWKRTQVEVAGLMNLFRRYIIKETRTLADNGIRVRFIGDRVRLDSKLIELMDSLEEET------KNNDLVHLTVALNYGGRDEVARATKRLARDVAEGRLKPEEVDEETLPKYLDTRV--LPDPDLVIRTSGEARISNFLLWQSAYSEYEFIDTLWPDFTAAELARLCQNYGTRDRRFGAVVA 243
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Match: UPI0010F95770 (polyprenyl diphosphate synthase n=1 Tax=Marimonas lutisalis TaxID=2545756 RepID=UPI0010F95770) HSP 1 Score: 233 bits (594), Expect = 4.920e-73 Identity = 125/248 (50.40%), Postives = 161/248 (64.92%), Query Frame = 1
Query: 76 DAKGGLRRVPKHVAFVLDGNGRWATRRGLPRTAGHIEGAKRALEVIELCRELGVQYVTLFTFSTENWKRPAAEVASLMALLEHNIEANRRAMRQNGIRLVLIGQKERLSTGLQCLVEEVQRETSVADAQQSGDQMTVCLAVSYGGRDEIARAAKAVALAVAEGRLSADDVTEEVLQGYLSTTQAGVPDPDLIIRTSGEHRISNFLLWQAAYSELYVSAKAWPDFKAADLVEAFQDFGTRQRRFGGVAA 819
D GG R P+HVA ++DGNGRWA RG PR GH GAKR E++E C +LGV+Y+T+F FSTENWKR EVA LM+L I RA++ G+R+ IG + RL LQ L++E++ T+ D++ + +A++YGGRDE+ARA K +A VA GRL + V EE L YL T +PDPDL+IRTSGE RISNFLLWQ+AY+E WPDF A + +GTR+RRFGGV A
Sbjct: 8 DRAGG--RGPRHVAIIMDGNGRWAQARGRPRLFGHHAGAKRVREIVEACPDLGVKYLTIFAFSTENWKRTQVEVAGLMSLFRRYITKEARALKAEGVRVRFIGDRVRLDKKLQALMDELEELTA------GNDRVHLTIALNYGGRDEVARATKRLAQDVAAGRLDPETVDEETLPKYLDTCV--LPDPDLVIRTSGEARISNFLLWQSAYAEYEFIDTLWPDFSAQIFADLVLAYGTRERRFGGVKA 245 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351864 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10810 ID=mRNA_10810|Name=jgi.p|Trimin1|351864|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=853bp|location=Sequence derived from alignment at Contig_101:339878..343897+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGTACAACAGTTGCCAGAGCGAAGCGCCACCTCCCAGGAGAGCACGTGback to top protein sequence of jgi.p|Trimin1|351864 >Trimin1|351864|estExt_Genemark1.C_Ctg_1010041 ID=Trimin1|351864|estExt_Genemark1.C_Ctg_1010041|Name=jgi.p|Trimin1|351864|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=282bp MVQQLPERSATSQESTWSPHHHQHHDAKGGLRRVPKHVAFVLDGNGRWATback to top mRNA from alignment at Contig_101:339878..343897+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10810 ID=mRNA_10810|Name=jgi.p|Trimin1|351864|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4020bp|location=Sequence derived from alignment at Contig_101:339878..343897+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_101:339878..343897+ >mRNA_10810 ID=mRNA_10810|Name=jgi.p|Trimin1|351864|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=846bp|location=Sequence derived from alignment at Contig_101:339878..343897+ (Tribonema minus UTEX_B_3156 )back to top |