mRNA_10803 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151889
Unique NamemRNA_10803
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: A0A835ZF46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF46_9STRA)

HSP 1 Score: 854 bits (2207), Expect = 1.810e-310
Identity = 507/507 (100.00%), Postives = 507/507 (100.00%), Query Frame = 1
Query:    1 MEVESEDEEGNVTMRRVPTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVCAGPGPMGRAWLSDVVWDERQRARRPQLIMSQRDMELFVTKEATPRPVLRARVVTEAGREDSAVLTDRENKLRMAEDKAQRLASAARATGFNYSADTTVKGISTDRTMRPVEVAPPVHAPPAAEKMLLRVPRPEEVRAFRRPRVARLLSSGQRLLLKSLGAKAAGGQMEMVTLRGGRTMSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMFSSQEKKGMSAMELRAMFKATGIDWDNLKAMAEEFAGSRNIQGVEMYYGRSFELELTNIRDQV 1521
            MEVESEDEEGNVTMRRVPTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVCAGPGPMGRAWLSDVVWDERQRARRPQLIMSQRDMELFVTKEATPRPVLRARVVTEAGREDSAVLTDRENKLRMAEDKAQRLASAARATGFNYSADTTVKGISTDRTMRPVEVAPPVHAPPAAEKMLLRVPRPEEVRAFRRPRVARLLSSGQRLLLKSLGAKAAGGQMEMVTLRGGRTMSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMFSSQEKKGMSAMELRAMFKATGIDWDNLKAMAEEFAGSRNIQGVEMYYGRSFELELTNIRDQV
Sbjct:    1 MEVESEDEEGNVTMRRVPTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVCAGPGPMGRAWLSDVVWDERQRARRPQLIMSQRDMELFVTKEATPRPVLRARVVTEAGREDSAVLTDRENKLRMAEDKAQRLASAARATGFNYSADTTVKGISTDRTMRPVEVAPPVHAPPAAEKMLLRVPRPEEVRAFRRPRVARLLSSGQRLLLKSLGAKAAGGQMEMVTLRGGRTMSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMFSSQEKKGMSAMELRAMFKATGIDWDNLKAMAEEFAGSRNIQGVEMYYGRSFELELTNIRDQV 507          
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.940e-39
Identity = 122/316 (38.61%), Postives = 172/316 (54.43%), Query Frame = 1
Query:  196 GRAWLSDVVWDERQRARRPQLIMSQRDMELFVTKEATPRPVLRARVVTEAGREDSAVLTDRENKLRMAEDKAQRLASAARATGFNYSADTTVKGISTDRTMRPVEVAPPVHAPPAAEKMLLRVPRP-EEVRAFRRPR--VARLLSSGQ---RLLLKSLGAKAAGGQMEMVTLRGGRTMST-MRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREP 1122
            G  W S V+ D+ Q+ ++P + +   D ++      TPRP LR  + TEA +E+S +L +R N+ +MA +K +RL SAA  TG+  +     K    +  +R V + PP HA PA +K+L+  P+  E++R   RPR  +  LL +     RL  K    +  G        R G  +S  M RE+DL+P E  + F++VEYVEERPPLL +TGMAS +I + RS+                   +R+   G E  E            L PQE+SPF+GEIR G  Q SICN L+RAP+F+H A D+DFLLIREP
Sbjct:  432 GGGWESQVLLDDSQKLKKPTIPVYLDDPDMLFGALHTPRPSLRI-LQTEAQQENSHIL-ERTNRRQMATEKQKRLQSAAMKTGYTINTVGDGKASRAESNIRAVIIRPPHHASPAEDKVLIAAPKSWEDIRNLHRPRMQIHTLLPNQMSIVRLPRKPKALQGGGQGGGGFGARIGEVVSMPMHREKDLLPLESHSTFVVVEYVEERPPLLGSTGMASTIITFVRSS-------------------SRRPIGGIERRE------------LSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREP 714          
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: W7TYE8_9STRA (Histone acetyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYE8_9STRA)

HSP 1 Score: 111 bits (277), Expect = 5.710e-22
Identity = 96/272 (35.29%), Postives = 130/272 (47.79%), Query Frame = 1
Query:  571 PEEVRAFRRPRVARLLSSGQRLLL--KSLGAKAAGGQMEMVTLRGGRTMST--MRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXX-------------RIARQ----ASFGAEGDEKPPERPD---GQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLK 1314
            P+ +R+F RPR+   L      L   K    +A GG      L GG  MST  +R  +DL  +E     ++VEY EERP LL   GMAS+++N WR +                              RI R+    +S   + D      PD   GQ   L P++ SPF+G+I  G+ Q ++ N LY+APLFEH A+ TDFLL+R  PK         +A E +           V+EIPRVY++GQ EP REVF PD    R F+   +K
Sbjct:  623 PDVLRSFHRPRLPLRLQDLSWTLRTPKDKSGQAGGGGRG--ALAGGHPMSTRTIRTTKDLNAYE--GELVVVEYPEERPLLLSNPGMASKLLNLWRLSPQNVEAERAMALERHAAGLGGGGGKSRGPPRITRENLGASSVAMDLDRVHAGVPDFKEGQTCVLYPEDPSPFIGQIEDGMRQLALFNNLYKAPLFEHKAKPTDFLLVRSHPKHVREPLTGESAGESE--------CYAVREIPRVYLSGQMEPLREVFHPDDGRFREFRDRLIK 882          
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: A0A1V9ZB49_9STRA (Transcription initiation factor TFIID subunit 1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZB49_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 6.740e-18
Identity = 107/408 (26.23%), Postives = 178/408 (43.63%), Query Frame = 1
Query:  169 LVCA-GPGPMGRAWLSDVVWDERQRARRPQLIMSQRDMELFVTKEATP--RPVLRARVVTEAGREDSAVLTDRENKLRMAEDKAQRLASAARATGFNYSADTTVKGISTD-----RTMRPVEVAPPVHAPPAAEKMLLRVPR--PEEVRAFRRPRVARLLSSGQRLLLKSLGAKAAGGQMEMVTLRGGRTMSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTD---------FLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMF 1335
            L CA  P     AWL+ + WD      R ++I+ + D  L +T       R  LR         E    L +++ K     +K  R+        F    DT    + +D     +  R V+    VH    A K+ L  P     ++R F RPR  +   + + +++ +  A+    +M  + +    T+S +++  DL P     + IL+EY+E++PP+L   GMASR++++WR                      +     A+ + KPP    GQ   L   +++PF+G++  G +  S+ ++L++ P+FEH+ R +          FLL+R               A  K   LK      + E+P VY+AGQ EPQ EV AP++     F   Y+ +HI R+F
Sbjct:  232 LDCALNPSLEDDAWLNAIAWDHCLDMPRSEVILDENDKHLVLTNPLVENVRATLRIPERKLGVHEKRQELLNKQKK-----EKTDRINDVMGNLAFGV--DTAAGRVGSDDLKRNKDTRIVKHMGHVHHSLPAIKLSLTKPELSKPKLREFHRPR-GKFKINERLVMVHAKDAEKVTKKMTELEMTDP-TLSQIKKTSDLNP-TAGGKLILLEYIEQKPPMLSNPGMASRILHYWRPPATDADDA-----------APKGKGKKAKTEHKPPAVSLGQIVTLGANDDTPFIGDVPPGEMVTSLNSKLFKIPIFEHAPRGSMLERSGEFEYFLLVR---------------AVSKKGGLKEGTTTYLMELPPVYIAGQVEPQMEVPAPNSRGANDFIRPYMSFHILRLF 603          
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: A0A1V9ZZT6_9STRA (Microtubule-associated protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZT6_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.430e-16
Identity = 114/429 (26.57%), Postives = 176/429 (41.03%), Query Frame = 1
Query:  169 LVCA-GPGPMGRAWLSDVVWDERQRARRPQLIMSQRDMELFVTKEATPRPVLRARVVTEAGREDSAVLTDRENKLRMAEDKAQRLASAARATG---------FNYSADTTVKGISTDRTMRPVE------VAPPVHAPPAAEKMLLR--VPRPEEVRAFRRPRVARLLSSGQRLLLKSLGAKAAGGQMEMVTLRGGRT--------MSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKP-----PERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTD---------FLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMF 1335
            L CA  P      WL+ + WD        ++I+ + D  L +T                      A L   E KL + E K ++L    R              +  +T    +++D   R  +      V    H+ PA +  L +  +P+P+ +R F RPR        +RL+L  + AK A    E VT     T        +S +++  DL P     + IL+EY+E+RPP+L   GMASR++++WR                     A   S   +G +K      P    GQ   L P +++PF+G++ AG +  S+ + L++ P+FEH  R +          FLL R   K   V               K      + E+P +YVAGQ EPQ EV AP++     F   Y+ +HI R+F
Sbjct:  278 LDCALNPSLEDDTWLNSIAWDHCMDMPESEVILDENDTHLILTNPLVENV--------------RATLRIPERKLGVHEKKQEQLNKQKREKNDRINDVMGNLTFGENTAEGRLASDELKRNKDTRIVKHVGHVHHSLPAIKLSLTKPELPKPK-LREFHRPRGK--FKINERLVL--VHAKDA----EKVTKASKNTELDVNDPALSQIKKTSDLNP-TAGGKLILLEYIEQRPPMLSNPGMASRILHYWRPPESD---------------TANDPSSKGKGKKKDRKLETPSVSLGQVVTLGPNDDTPFIGDVPAGKMVTSLNSRLFKIPIFEHQPRGSMLERSNEFDYFLLARSVSKKGGV---------------KGGTTTYLMELPSLYVAGQVEPQMEVPAPNSRGANDFIRPYMSFHILRLF 652          
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: M4BEB5_HYAAE (Bromo domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BEB5_HYAAE)

HSP 1 Score: 92.0 bits (227), Expect = 8.620e-16
Identity = 87/285 (30.53%), Postives = 133/285 (46.67%), Query Frame = 1
Query:  526 HAPPAAEKMLLRVPRPE-EVRAFRRPRVARLLSSGQRLLLKSLGAKAAGGQMEMVTLRGGRTMSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHS----------ARDTD----FLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMF 1335
            H+ PA +  L +   P+ ++R F RPR    +S          GA     Q +   +      + +++  DL P     + IL+EY E+RPP+L   GMASR++++WR                   + AR+         KPP+   GQ   L   +ESPF+G+I  G V  S+ ++LY+ P+F H           AR+ +    FL+ R   K       K +AAE K   L +     + E+P V+VAGQ EPQ EV AP++ +   F   Y+ +HI R+F
Sbjct:  462 HSLPAIKLSLTKPELPKTKLRDFHRPRGKFKISERLDFYPPPSGAAKLAPQEDSAMV------TQIKKSSDLSP-TAGGKLILIEYTEQRPPMLSNPGMASRILHYWRPPEDTSTSLGILGK-----KKARKTR------PKPPDMEMGQVITLGDHDESPFVGDIPPGRVVTSLNSKLYKVPIFPHKPTVPFAASAEARERNNSDMFLMCRSVTKGK-----KGSAAE-KSGGLGVSTTVYIMELPTVFVAGQIEPQIEVPAPNSRSANEFIRPYMSFHILRLF 722          
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: A0A397UXI7_9GLOM (Uncharacterized protein n=3 Tax=Gigaspora TaxID=4873 RepID=A0A397UXI7_9GLOM)

HSP 1 Score: 82.8 bits (203), Expect = 6.770e-13
Identity = 66/192 (34.38%), Postives = 90/192 (46.88%), Query Frame = 1
Query:  703 RTMSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFM--GEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAP 1272
            R    MR  +DL   + ++ F+L EY EE PP+L   GM S ++N++R T                             D   PE   G P  L+  +ESPFM  G++  G V PS+ N L RAPLF H A+DTDFL+IR   K+             KP+         V+EI  ++V GQT P +EV +P
Sbjct:  524 RKREEMRSPKDLT-LKDNSNFVLFEYSEEYPPILSNIGMGSLLLNYYRKTDPY--------------------------DTYVPELNVGDPVILDMMDESPFMNFGDVERGQVIPSLFNNLIRAPLFSHDAKDTDFLVIRHTYKA-------------KPK-------YYVREIKNLFVVGQTFPMQEVPSP 668          
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: A0A2P2MNF7_RHIMU (Ubiquitin-like domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MNF7_RHIMU)

HSP 1 Score: 81.6 bits (200), Expect = 1.440e-12
Identity = 64/210 (30.48%), Postives = 94/210 (44.76%), Query Frame = 1
Query:  769 LVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMFSSQEKKGM----SAMELRAMF 1386
            L+EY EERP LL   GM + +  + + +                  + R  +              G    LEP ++SPF+G+I AG  Q S+   +Y+AP+F H    TD+LL+R              +A+GK           V+ I R+ V GQ EP  EVF+P + N++A+    L  ++ R F + EK GM     A EL A F
Sbjct:  780 LMEYCEERPLLLSNAGMGANLCTYHQKSSPGDQTGV----------LLRNGNHSL-----------GNVAILEPNDKSPFLGDITAGCSQSSLQTNMYKAPVFPHKVPSTDYLLVR--------------SAKGKLS---------VRRIDRIAVVGQQEPLMEVFSPGSKNLQAYITQRLLVYVYREFQAAEKSGMIPWIRADELSAQF 945          
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: A0A2P2MNG2_RHIMU (Transcription initiation factor TFIID subunit 1 isoform X2 n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MNG2_RHIMU)

HSP 1 Score: 81.6 bits (200), Expect = 1.760e-12
Identity = 64/210 (30.48%), Postives = 94/210 (44.76%), Query Frame = 1
Query:  769 LVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMFSSQEKKGM----SAMELRAMF 1386
            L+EY EERP LL   GM + +  + + +                  + R  +              G    LEP ++SPF+G+I AG  Q S+   +Y+AP+F H    TD+LL+R              +A+GK           V+ I R+ V GQ EP  EVF+P + N++A+    L  ++ R F + EK GM     A EL A F
Sbjct:  780 LMEYCEERPLLLSNAGMGANLCTYHQKSSPGDQTGV----------LLRNGNHSL-----------GNVAILEPNDKSPFLGDITAGCSQSSLQTNMYKAPVFPHKVPSTDYLLVR--------------SAKGKLS---------VRRIDRIAVVGQQEPLMEVFSPGSKNLQAYITQRLLVYVYREFQAAEKSGMIPWIRADELSAQF 945          
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: A0A7E5V9L8_TRINI (transcription initiation factor TFIID subunit 1 isoform X1 n=3 Tax=Trichoplusia ni TaxID=7111 RepID=A0A7E5V9L8_TRINI)

HSP 1 Score: 80.5 bits (197), Expect = 4.060e-12
Identity = 88/312 (28.21%), Postives = 130/312 (41.67%), Query Frame = 1
Query:  571 PEEVRAFRRPRVARLLSSGQ---------RLLLKSLGAKAAGGQMEMVTLRGGRTMSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQE-----ESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMF--------------------SSQEKKGMSAMELRAMFKATGID 1404
            P  +RAF RP + R LS G          + LLK +  KA   + E +   GG  +  MR   DL   +     +LVE+ EE PPL+   GM S++ N+++                   R A + S    G+ K     D  P+ L+  E      SPF+G +  G  QP I N +YRAP++EH+ + TDFL+IR                       +  Y   ++E+  ++VAGQ  P  EV  P++     F   +L+  I R+F                    S  E      ++L A FK TG+D
Sbjct:  604 PARLRAFHRPAM-RKLSYGPLAAPGPHPVQPLLKHIKKKAKQREAERLASGGG-DVFFMRTPEDLSGRD--GELVLVEFCEEHPPLISQVGMCSKIKNYYK-------------------RTAAKGSKRGTGNSK-----DEGPKPLKYGEVAYAHTSPFLGILPPGATQPVIENNMYRAPIYEHTLQSTDFLIIRT----------------------RQSYY--IREVDALFVAGQECPLYEVPGPNSKRANNFVRDFLQVFIYRLFWKSRDKPRRIKMDDIKRAFPSHSESSIRKRLKLCADFKRTGLD 863          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZF46_9STRA1.810e-310100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FIW7_ECTSI1.940e-3938.61Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
W7TYE8_9STRA5.710e-2235.29Histone acetyltransferase n=2 Tax=Monodopsidaceae ... [more]
A0A1V9ZB49_9STRA6.740e-1826.23Transcription initiation factor TFIID subunit 1 n=... [more]
A0A1V9ZZT6_9STRA2.430e-1626.57Microtubule-associated protein (Fragment) n=1 Tax=... [more]
M4BEB5_HYAAE8.620e-1630.53Bromo domain-containing protein n=1 Tax=Hyaloperon... [more]
A0A397UXI7_9GLOM6.770e-1334.38Uncharacterized protein n=3 Tax=Gigaspora TaxID=48... [more]
A0A2P2MNF7_RHIMU1.440e-1230.48Ubiquitin-like domain-containing protein n=1 Tax=R... [more]
A0A2P2MNG2_RHIMU1.760e-1230.48Transcription initiation factor TFIID subunit 1 is... [more]
A0A7E5V9L8_TRINI4.060e-1228.21transcription initiation factor TFIID subunit 1 is... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_101contigContig_101:262798..267852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151889|gw1.101.103.1
BRITEko00000,ko00001,ko01001,ko03021,ko03036
KEGG Pathwayko03022,map03022
KEGG koko:K03125
Descriptionnegative regulation of protein autoubiquitination
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5179@1|root,KOG0008@2759|Eukaryota
Evalue3.19e-40
Seed ortholog2880.D7FIW7
Hectar predicted targeting categoryother localisation
TranscriptId152211
TrackFilteredModels1
ProteinId151889
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151889gene_10803Tribonema minus UTEX_B_3156 geneContig_101 262798..267852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151889Trimin1|151889|gw1.101.103.1Tribonema minus UTEX_B_3156 polypeptideContig_101 262798..267852 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10803_5exon_10803_5Tribonema minus UTEX_B_3156 exonContig_101 262798..262998 -
exon_10803_4exon_10803_4Tribonema minus UTEX_B_3156 exonContig_101 264352..264585 -
exon_10803_3exon_10803_3Tribonema minus UTEX_B_3156 exonContig_101 265390..265815 -
exon_10803_2exon_10803_2Tribonema minus UTEX_B_3156 exonContig_101 266900..267216 -
exon_10803_1exon_10803_1Tribonema minus UTEX_B_3156 exonContig_101 267510..267852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10803CDS_10803Tribonema minus UTEX_B_3156 CDSContig_101 267510..267852 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10803 ID=mRNA_10803|Name=jgi.p|Trimin1|151889|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1521bp|location=Sequence derived from alignment at Contig_101:262798..267852- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGTGGAGTCGGAGGACGAGGAGGGCAATGTGACGATGCGGCGGGT
GCCGACTGGAGCAGCAGCAGCAGCGGCGGCGGCGGCGCCAGCAGCAGCTG
GGGCGCGCATGGGGCCCCCGGCGCCGGTCAGCGGCGGCGCTGCTGCCAAG
TCGTCGTCCTCTTCGGTGCTGGTGTGCGCGGGGCCAGGGCCTATGGGGAG
GGCGTGGCTGAGCGATGTGGTGTGGGATGAGCGTCAGCGCGCGCGGCGCC
CGCAGCTGATCATGAGCCAGCGCGACATGGAGCTGTTTGTGACCAAAGAG
GCGACGCCGCGGCCGGTGCTGCGGGCCAGGGTCGTGACCGAAGCGGGCCG
CGAGGACAGCGCCGTGCTCACGGACCGCGAGAACAAGCTGCGCATGGCGG
AGGACAAGGCGCAGCGCCTCGCGTCCGCGGCGCGCGCCACCGGCTTCAAC
TACAGCGCCGACACCACCGTCAAGGGCATCAGCACGGACAGGACCATGCG
CCCCGTGGAGGTCGCGCCGCCCGTGCACGCGCCGCCGGCGGCGGAGAAGA
TGCTGCTGCGCGTGCCGCGCCCGGAGGAGGTGCGCGCGTTCCGCCGGCCG
CGCGTCGCGCGCCTGCTGTCGAGCGGGCAACGGCTGCTGCTCAAGTCGCT
GGGCGCCAAGGCCGCAGGCGGTCAAATGGAGATGGTGACGCTCCGCGGCG
GGCGCACCATGAGCACCATGCGGCGCGAGCGCGACCTCATCCCCTTTGAG
CCCAGCGCGCGCTTCATCCTCGTGGAGTACGTGGAGGAGCGCCCCCCCCT
TCTCTGCGCCACGGGCATGGCCAGCAGGGTCATCAACTGGTGGCGCTCCA
CGGGGGGGGGCGGGGGGGCGGGGGGGGGTGCGGCGGGGGCGGGCGGGGGG
GGGCGCATTGCGCGGCAGGCGTCGTTTGGAGCGGAGGGGGACGAGAAGCC
CCCAGAGAGACCGGATGGGCAGCCGCAGAGGCTCGAGCCGCAGGAGGAGA
GCCCCTTTATGGGGGAGATTCGCGCGGGGGTGGTGCAGCCGTCGATATGC
AACGAGCTGTACCGGGCGCCGCTGTTTGAGCACTCGGCGCGAGACACCGA
CTTCCTGCTCATCCGAGAGCCGCCAAAGAGCTCCGCGGTCGCCGCCGCCA
AGGCCGCCGCGGCGGAGGGCAAGCCTGAGAAGTTGAAGTTGCCGTACGTC
AACATTGTGAAGGAGATACCGCGCGTGTACGTGGCGGGCCAGACGGAGCC
GCAGCGCGAGGTGTTTGCGCCGGACGCGGACAACGTGCGCGCGTTCCAGG
TTACATACCTCAAGTACCATATCGCGCGCATGTTCAGCAGCCAGGAGAAG
AAAGGCATGTCAGCCATGGAACTTCGTGCCATGTTCAAGGCCACCGGCAT
TGACTGGGACAACCTCAAGGCTATGGCAGAGGAGTTTGCGGGCTCCAGGA
ACATACAGGGCGTTGAGATGTACTACGGGCGCTCCTTTGAGCTGGAACTC
ACGAACATCAGAGACCAGGTG
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protein sequence of jgi.p|Trimin1|151889

>Trimin1|151889|gw1.101.103.1 ID=Trimin1|151889|gw1.101.103.1|Name=jgi.p|Trimin1|151889|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=507bp
MEVESEDEEGNVTMRRVPTGAAAAAAAAAPAAAGARMGPPAPVSGGAAAK
SSSSSVLVCAGPGPMGRAWLSDVVWDERQRARRPQLIMSQRDMELFVTKE
ATPRPVLRARVVTEAGREDSAVLTDRENKLRMAEDKAQRLASAARATGFN
YSADTTVKGISTDRTMRPVEVAPPVHAPPAAEKMLLRVPRPEEVRAFRRP
RVARLLSSGQRLLLKSLGAKAAGGQMEMVTLRGGRTMSTMRRERDLIPFE
PSARFILVEYVEERPPLLCATGMASRVINWWRSTGGGGGAGGGAAGAGGG
GRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSIC
NELYRAPLFEHSARDTDFLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYV
NIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMFSSQEK
KGMSAMELRAMFKATGIDWDNLKAMAEEFAGSRNIQGVEMYYGRSFELEL
TNIRDQV
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mRNA from alignment at Contig_101:262798..267852-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10803 ID=mRNA_10803|Name=jgi.p|Trimin1|151889|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5055bp|location=Sequence derived from alignment at Contig_101:262798..267852- (Tribonema minus UTEX_B_3156 )
ATGGAGGTGGAGTCGGAGGACGAGGAGGGCAATGTGACGATGCGGCGGGT GCCGACTGGAGCAGCAGCAGCAGCGGCGGCGGCGGCGCCAGCAGCAGCTG GGGCGCGCATGGGGCCCCCGGCGCCGGTCAGCGGCGGCGCTGCTGCCAAG TCGTCGTCCTCTTCGGTGCTGGTGTGCGCGGGGCCAGGGCCTATGGGGAG GGCGTGGCTGAGCGATGTGGTGTGGGATGAGCGTCAGCGCGCGCGGCGCC CGCAGCTGATCATGAGCCAGCGCGACATGGAGCTGTTTGTGACCAAAGAG GCGACGCCGCGGCCGGTGCTGCGGGCCAGGGTCGTGACCGAAGGTGCGTG GCGACTCTGAGCATGATTGGGATAGCTGGACGTCACAAGGATTTGGGGGG GGGGGTTGATCAGGATTTGGGGGGGGGGCTAGGAGGCGCAAGCTGCAATG CTGGGAGTTGCCTGAGCGTATATACTGCAAAGCGCACAACTTGAACTCAT GCTGATAACCGCCTTAAGCGGGGTCACTGGTTCATCACGACCACAACAGA CCTGCTCTTGCGCCACTATCGCATCAGCCACGAGCCCACGCAAATAACCC TAATCTCGCCGCGCGCCGCCGCTGCTACCTTGCCAGCGGGCCGCGAGGAC AGCGCCGTGCTCACGGACCGCGAGAACAAGCTGCGCATGGCGGAGGACAA GGCGCAGCGCCTCGCGTCCGCGGCGCGCGCCACCGGCTTCAACTACAGCG CCGACACCACCGTCAAGGGCATCAGCACGGACAGGACCATGCGCCCCGTG GAGGTCGCGCCGCCCGTGCACGCGCCGCCGGCGGCGGAGAAGATGCTGCT GCGCGTGCCGCGCCCGGAGGAGGTGCGCGCGTTCCGCCGGCCGCGCGTCG CGCGCCTGCTGTCGAGCGGGCAACGGCTGCTGCTCAAGTCGCTGGGCGCC AAGGTGAGCGCGTTGTGCGTGTGAAAGTTGGGGTTGACATTGAAGGTTTG ATTGAAGTTGAAGTTGGTGTTGAAGTTTTTGGAAGAAGAAGACCATTCCT TATAATGGTCTTATAAGAATGGTCTTCGAGAAGACCATTCATTCCTTAGA ATGGTCTTCTTCTTCCGGGCATTTAGTGTTGTAGTGTGTCGCAGAGGACG TGTGCGCGTTCCGGCGGCCGCGCGTCGCGCGTTTGTTGTCGAGCGGGCAG CGGCTGCTGCTCAAGTCGCTGGGCGCCAAGGTGAGCGCGTCGTGAATGTG AAAGTTCAATTCAGCATTGAAGTTTTGATTGAAGTTGATGTAAAAGTTGA AGTTTAGGTATGATGTTGTAGCTGCACGTGTTGCGGTGTGAGGAGGTGCG CGCGTTCGGGCGGCCACACGGCGCGCGTTTACTGTCGAACAGGCAGCGCT GCTGCTCAAGTCGCTGGGCGCCAAGGTGAGCGCGTCGTGATGATGAAACT TGAAGTCGAATGTTGAAGTATTACGTGCCCGCTGGCGGGCGCGCGCAGCG GCTGCTGTTCGCGTCCCTCAGTCTAAGGTGAGCGTTTGTTGAAGCTGAAA TTATAGCTGGCACAGTGGAACGGTTTCCATGCGGTGAAGCAAGTGCTGTC TGCAGTGACAGTCTTGCAGCGCTCTGTTGTCACACAGTGCATCTTGTGCC CCGGAGTCAAGTGCGTTGCCCTCCTCTTGCCTGCTGCTGCCCCTCATGCT GGAGATGTCGGCACTTGTGGCAGGCATGCCATAAGCATGACGCTGCACCA TTGCAATCAAGCATGTGTTCTGACGCACATGTGCAGTTCAAATCCAGCTT GAACCAACTCAAACTCGCACTCGTACCTATGTTACGGGTGTACGCGTCGC CTCTGGTTGTCATGCAGCGCGCATACATGTTTTGCAATGGTGCGAGCTGC CGCTCGTGCTGCTATCATCGAGCAGACCAGTAGTACAAGCCAGCTACCCC TGTCACGGCCTCTATAATACCGCCTGTCAGCGCCCCTACACATGACCCCT CCCCCCCCCCTCCCCCCCCCCACCTGCCGCTCTGCAGGCCGCAGGCGGTC AAATGGAGATGGTGACGCTCCGCGGCGGGCGCACCATGAGCACCATGCGG CGCGAGCGCGACCTCATCCCCTTTGAGCCCAGCGCGCGCTTCATCCTCGT GGAGTACGTGGAGGAGCGCCCCCCCCTTCTCTGCGCCACGGGCATGGCCA GCAGGGTCATCAACTGGTGGCGCTCCACGGGGGGGGGCGGGGGGGCGGGG GGGGGTGCGGCGGGGGCGGGCGGGGGGGGGCGCATTGCGCGGCAGGCGTC GTTTGGAGCGGAGGGGGACGAGAAGCCCCCAGAGAGACCGGATGGGCAGC CGCAGAGGCTCGAGCCGCAGGAGGAGAGCCCCTTTATGGGGGAGATTCGC GCGGGGGTGGTGCAGCCGTCGATATGCAACGAGCTGTACCGGGCGCCGCT GTTTGAGCACTCGGTGAGTTGGTGCTTGAGCGTTGCCACGGCTGTGCGTC TGCGCCCAGTGACTTGGAGTCAGACTCGTGAGTCATCCGGCAGCCGTCAC CACTGCTCAGCGCTCGCTGCCTGTTGAGCATCACCCTTCCTGCAGCTCCT CTCCACGCGAGCGTTAAGCAGGACGCAGCTGCGCTCGGAGGCGCATCGGA GGAGGTAGCGCTCAGCAACGGGGGCGAGTCAGCGGCACCTGATGGCGACA GGACGGCAGCACTGCCGTGCGCCACCAAGGGCGGGGCGGCAGCTTCGAGC GTTGAGCAGGATGCAGCTCCGCTCGGCGCTCGGCGCCGGATGAGCAGGAC TCTTGGGTGGGTGCTGCCGCCGCCCAGCGCTGACCGCCGAGCGGATTTGC AACCCGCTCAACGCTCAGCGCTGCCGCCGCGCCCTCCGCGGTGCGCGGCA GTGCTCCGGTCGCCGTCAAGTGCCGCCGACTCGCCCCCGGCGCTGAGCAC TGCCGCCTCTGACGCGTCTCCGAGCGCCGCTGCCTCCGCCTCAGCCTGGC CGCCGAGCGATGCTGCCTCACGCGCAGGCTCGAGCGCATGCCATGCTCAT GTCCCTTACGCACACCGGTGACATATGTGTAGCTGGCCTCAATACTGTCG CCTGTTTTTTAATTCTCACAGCTGCGCTGTCGGCGTCGGTGGTGAACTGG CGACACAGTCTGTCGCGTGCTGCGCGCTGTCTGTCGCCGCTGCCACAACG AGTCGCACATCGAGTCGTTCGTTGCGGCACTGCTCAACATGTGCATCATC GCTCCGCACGAGCGCAGGCGCGAGACACCGACTTCCTGCTCATCCGAGAG CCGCCAAAGAGCTCCGCGGTCGCCGCCGCCAAGGCCGCCGCGGCGGAGGG CAAGCCTGAGAAGTTGAAGTTGCCGTACGTCAACATTGTGAAGGAGATAC CGCGCGTGTACGTGGCGGGCCAGACGGAGCCGCAGCGCGAGGTGTTTGCG CCGGACGCGGACAACGTGCGCGCGTTCCAGGTTACATACCTCAAGTACCA TGTGAGTGGCCGAGGGCTGGTAGCTGAAAGTACTTTGAAGTATGCATGTT GTGCCCAGGGTACACAGCTCAAGTATTTGAGTGGCCGGCTGGCAGGTATT CACTTTGTGCCTAGGATACATACCTCGAGTACCGGTGTGTGTGGTCAAGG GCTGGCATGTATAACACGCACCTCAAGTATCATGCGAGCTTTGCAAGGGG TGCTATTGTTTTGGGGACCGTACCTCAAGTCGTGTGTGTGCCCAAGGGCT AAAGGCCACGGGCTAGGAGGTATGCACTTTGTTTCAGCTTACATACCTCA AGTACCATGTGAGTGGCCAAGGGCTGATAGGTACTTCTTGAGTATGCATT TTGTGCCCAGGATATTGCCTCGAACACCATGTGTGCCCAGAGGGCTGTGT TGTAGGGTTGCATACCTCCTCAATACCATGTGAGTGGCAAGGGTTGGTAG GCATGCACTTTGTTCCACGATACATCCAGTACCATGTGTGAGTGGCCAAG GGCTGGTCGGTATGCACTTCGTTCCAGGATACATACCTCAAGTACCACGT GAGCGTCCCATGAGTGTCCCAGTGGACGGCAAAGGGCAGGTACGTATGCA CCCTGTTCCGGGATGCATACCTCAAGTATCATCTGAGTGGCCTAGGGCTC TGGCATTCATGACGCGTACCTCAAGTATCGGGTGAGTTGTCAACAGTTGA TGTTTTGGGACACGTACATTGCCTCACGTATCAGCGAGTGGCAAAGGGCT TGTATGTATGCGCGGTTAAGGATAGTCTACATACCTCGTGTACTGTACCA CAGTCAGTGTCAGCTTTATTGCCGACCCTGAGTGATGTACGCTGCGTCAA GACATGTTCTTGAAGTAACTTTGTTTCATCATCACCCCTTTTGTAACCCT ATTTGAGCCACGTGCGCACATTCTTTGTTTTCCGCGCCCTCTCTTTCAAA TTGCCTTTCTGTCCGTAGATTTCCTCACATGTTGAGCATTGCTGCATGGG TGCACGACCAGGACATACAGTCACCTGCCACGTCCTCAGAATACAACCAT GATACACTAGCACGAGAGTCTGCAGCTGTGATTGGCCAGTGTTAGCCCTA CCCCCTAACCCTAACTGAGCGTTGTTTGCGCGCGTCGTGCATGTTTGTTT CATTACTAATCAAGAATCACGTGCGTGGCCTGACCCTAAGCTTTACGCTA CGTTTAACAGTAGGATTAGATGTAGGATTACAGCTAGGGTTAGAGTTATT TGAGCGGCGCACCATCCTTACGGATTTCAATTTGTGCTTACACCCTGGGC TAATGAAACTCCTGTCATTGCCACAACACCCTTATTACTGCCATTTCCAC ACAGATCGCGCGCATGTTCAGCAGCCAGGAGAAGAAAGGCATGTCAGCCA TGGAACTTCGTGCCATGTTCAAGGCCACCGGCATTGACTGGGACAACCTC AAGGCTATGGCAGAGGAGTTTGCGGGCTCCAGGAACATACAGGGCGTTGA GATGTACTACGGGCGCTCCTTTGAGCTGGAACTCACGAACATCAGAGACC AGGTG
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Coding sequence (CDS) from alignment at Contig_101:262798..267852-

>mRNA_10803 ID=mRNA_10803|Name=jgi.p|Trimin1|151889|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1521bp|location=Sequence derived from alignment at Contig_101:262798..267852- (Tribonema minus UTEX_B_3156 )
ATGGAGGTGGAGTCGGAGGACGAGGAGGGCAATGTGACGATGCGGCGGGT
GCCGACTGGAGCAGCAGCAGCAGCGGCGGCGGCGGCGCCAGCAGCAGCTG
GGGCGCGCATGGGGCCCCCGGCGCCGGTCAGCGGCGGCGCTGCTGCCAAG
TCGTCGTCCTCTTCGGTGCTGGTGTGCGCGGGGCCAGGGCCTATGGGGAG
GGCGTGGCTGAGCGATGTGGTGTGGGATGAGCGTCAGCGCGCGCGGCGCC
CGCAGCTGATCATGAGCCAGCGCGACATGGAGCTGTTTGTGACCAAAGAG
GCGACGCCGCGGCCGGTGCTGCGGGCCAGGGTCGTGACCGAAGCGGGCCG
CGAGGACAGCGCCGTGCTCACGGACCGCGAGAACAAGCTGCGCATGGCGG
AGGACAAGGCGCAGCGCCTCGCGTCCGCGGCGCGCGCCACCGGCTTCAAC
TACAGCGCCGACACCACCGTCAAGGGCATCAGCACGGACAGGACCATGCG
CCCCGTGGAGGTCGCGCCGCCCGTGCACGCGCCGCCGGCGGCGGAGAAGA
TGCTGCTGCGCGTGCCGCGCCCGGAGGAGGTGCGCGCGTTCCGCCGGCCG
CGCGTCGCGCGCCTGCTGTCGAGCGGGCAACGGCTGCTGCTCAAGTCGCT
GGGCGCCAAGGCCGCAGGCGGTCAAATGGAGATGGTGACGCTCCGCGGCG
GGCGCACCATGAGCACCATGCGGCGCGAGCGCGACCTCATCCCCTTTGAG
CCCAGCGCGCGCTTCATCCTCGTGGAGTACGTGGAGGAGCGCCCCCCCCT
TCTCTGCGCCACGGGCATGGCCAGCAGGGTCATCAACTGGTGGCGCTCCA
CGGGGGGGGGCGGGGGGGCGGGGGGGGGTGCGGCGGGGGCGGGCGGGGGG
GGGCGCATTGCGCGGCAGGCGTCGTTTGGAGCGGAGGGGGACGAGAAGCC
CCCAGAGAGACCGGATGGGCAGCCGCAGAGGCTCGAGCCGCAGGAGGAGA
GCCCCTTTATGGGGGAGATTCGCGCGGGGGTGGTGCAGCCGTCGATATGC
AACGAGCTGTACCGGGCGCCGCTGTTTGAGCACTCGGCGCGAGACACCGA
CTTCCTGCTCATCCGAGAGCCGCCAAAGAGCTCCGCGGTCGCCGCCGCCA
AGGCCGCCGCGGCGGAGGGCAAGCCTGAGAAGTTGAAGTTGCCGTACGTC
AACATTGTGAAGGAGATACCGCGCGTGTACGTGGCGGGCCAGACGGAGCC
GCAGCGCGAGGTGTTTGCGCCGGACGCGGACAACGTGCGCGCGTTCCAGG
TTACATACCTCAAGTACCATATCGCGCGCATGTTCAGCAGCCAGGAGAAG
AAAGGCATGTCAGCCATGGAACTTCGTGCCATGTTCAAGGCCACCGGCAT
TGACTGGGACAACCTCAAGGCTATGGCAGAGGAGTTTGCGGGCTCCAGGA
ACATACAGGGCGTTGAGATGTACTACGGGCGCTCCTTTGAGCTGGAACTC
ACGAACATCAGAGACCAGGTG
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