mRNA_10803 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: A0A835ZF46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF46_9STRA) HSP 1 Score: 854 bits (2207), Expect = 1.810e-310 Identity = 507/507 (100.00%), Postives = 507/507 (100.00%), Query Frame = 1
Query: 1 MEVESEDEEGNVTMRRVPTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVCAGPGPMGRAWLSDVVWDERQRARRPQLIMSQRDMELFVTKEATPRPVLRARVVTEAGREDSAVLTDRENKLRMAEDKAQRLASAARATGFNYSADTTVKGISTDRTMRPVEVAPPVHAPPAAEKMLLRVPRPEEVRAFRRPRVARLLSSGQRLLLKSLGAKAAGGQMEMVTLRGGRTMSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMFSSQEKKGMSAMELRAMFKATGIDWDNLKAMAEEFAGSRNIQGVEMYYGRSFELELTNIRDQV 1521
MEVESEDEEGNVTMRRVPTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVCAGPGPMGRAWLSDVVWDERQRARRPQLIMSQRDMELFVTKEATPRPVLRARVVTEAGREDSAVLTDRENKLRMAEDKAQRLASAARATGFNYSADTTVKGISTDRTMRPVEVAPPVHAPPAAEKMLLRVPRPEEVRAFRRPRVARLLSSGQRLLLKSLGAKAAGGQMEMVTLRGGRTMSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMFSSQEKKGMSAMELRAMFKATGIDWDNLKAMAEEFAGSRNIQGVEMYYGRSFELELTNIRDQV
Sbjct: 1 MEVESEDEEGNVTMRRVPTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVCAGPGPMGRAWLSDVVWDERQRARRPQLIMSQRDMELFVTKEATPRPVLRARVVTEAGREDSAVLTDRENKLRMAEDKAQRLASAARATGFNYSADTTVKGISTDRTMRPVEVAPPVHAPPAAEKMLLRVPRPEEVRAFRRPRVARLLSSGQRLLLKSLGAKAAGGQMEMVTLRGGRTMSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMFSSQEKKGMSAMELRAMFKATGIDWDNLKAMAEEFAGSRNIQGVEMYYGRSFELELTNIRDQV 507
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI) HSP 1 Score: 164 bits (414), Expect = 1.940e-39 Identity = 122/316 (38.61%), Postives = 172/316 (54.43%), Query Frame = 1
Query: 196 GRAWLSDVVWDERQRARRPQLIMSQRDMELFVTKEATPRPVLRARVVTEAGREDSAVLTDRENKLRMAEDKAQRLASAARATGFNYSADTTVKGISTDRTMRPVEVAPPVHAPPAAEKMLLRVPRP-EEVRAFRRPR--VARLLSSGQ---RLLLKSLGAKAAGGQMEMVTLRGGRTMST-MRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREP 1122
G W S V+ D+ Q+ ++P + + D ++ TPRP LR + TEA +E+S +L +R N+ +MA +K +RL SAA TG+ + K + +R V + PP HA PA +K+L+ P+ E++R RPR + LL + RL K + G R G +S M RE+DL+P E + F++VEYVEERPPLL +TGMAS +I + RS+ +R+ G E E L PQE+SPF+GEIR G Q SICN L+RAP+F+H A D+DFLLIREP
Sbjct: 432 GGGWESQVLLDDSQKLKKPTIPVYLDDPDMLFGALHTPRPSLRI-LQTEAQQENSHIL-ERTNRRQMATEKQKRLQSAAMKTGYTINTVGDGKASRAESNIRAVIIRPPHHASPAEDKVLIAAPKSWEDIRNLHRPRMQIHTLLPNQMSIVRLPRKPKALQGGGQGGGGFGARIGEVVSMPMHREKDLLPLESHSTFVVVEYVEERPPLLGSTGMASTIITFVRSS-------------------SRRPIGGIERRE------------LSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREP 714
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: W7TYE8_9STRA (Histone acetyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYE8_9STRA) HSP 1 Score: 111 bits (277), Expect = 5.710e-22 Identity = 96/272 (35.29%), Postives = 130/272 (47.79%), Query Frame = 1
Query: 571 PEEVRAFRRPRVARLLSSGQRLLL--KSLGAKAAGGQMEMVTLRGGRTMST--MRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXX-------------RIARQ----ASFGAEGDEKPPERPD---GQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLK 1314
P+ +R+F RPR+ L L K +A GG L GG MST +R +DL +E ++VEY EERP LL GMAS+++N WR + RI R+ +S + D PD GQ L P++ SPF+G+I G+ Q ++ N LY+APLFEH A+ TDFLL+R PK +A E + V+EIPRVY++GQ EP REVF PD R F+ +K
Sbjct: 623 PDVLRSFHRPRLPLRLQDLSWTLRTPKDKSGQAGGGGRG--ALAGGHPMSTRTIRTTKDLNAYE--GELVVVEYPEERPLLLSNPGMASKLLNLWRLSPQNVEAERAMALERHAAGLGGGGGKSRGPPRITRENLGASSVAMDLDRVHAGVPDFKEGQTCVLYPEDPSPFIGQIEDGMRQLALFNNLYKAPLFEHKAKPTDFLLVRSHPKHVREPLTGESAGESE--------CYAVREIPRVYLSGQMEPLREVFHPDDGRFREFRDRLIK 882
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: A0A1V9ZB49_9STRA (Transcription initiation factor TFIID subunit 1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZB49_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 6.740e-18 Identity = 107/408 (26.23%), Postives = 178/408 (43.63%), Query Frame = 1
Query: 169 LVCA-GPGPMGRAWLSDVVWDERQRARRPQLIMSQRDMELFVTKEATP--RPVLRARVVTEAGREDSAVLTDRENKLRMAEDKAQRLASAARATGFNYSADTTVKGISTD-----RTMRPVEVAPPVHAPPAAEKMLLRVPR--PEEVRAFRRPRVARLLSSGQRLLLKSLGAKAAGGQMEMVTLRGGRTMSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTD---------FLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMF 1335
L CA P AWL+ + WD R ++I+ + D L +T R LR E L +++ K +K R+ F DT + +D + R V+ VH A K+ L P ++R F RPR + + + +++ + A+ +M + + T+S +++ DL P + IL+EY+E++PP+L GMASR++++WR + A+ + KPP GQ L +++PF+G++ G + S+ ++L++ P+FEH+ R + FLL+R A K LK + E+P VY+AGQ EPQ EV AP++ F Y+ +HI R+F
Sbjct: 232 LDCALNPSLEDDAWLNAIAWDHCLDMPRSEVILDENDKHLVLTNPLVENVRATLRIPERKLGVHEKRQELLNKQKK-----EKTDRINDVMGNLAFGV--DTAAGRVGSDDLKRNKDTRIVKHMGHVHHSLPAIKLSLTKPELSKPKLREFHRPR-GKFKINERLVMVHAKDAEKVTKKMTELEMTDP-TLSQIKKTSDLNP-TAGGKLILLEYIEQKPPMLSNPGMASRILHYWRPPATDADDA-----------APKGKGKKAKTEHKPPAVSLGQIVTLGANDDTPFIGDVPPGEMVTSLNSKLFKIPIFEHAPRGSMLERSGEFEYFLLVR---------------AVSKKGGLKEGTTTYLMELPPVYIAGQVEPQMEVPAPNSRGANDFIRPYMSFHILRLF 603
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: A0A1V9ZZT6_9STRA (Microtubule-associated protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZT6_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 2.430e-16 Identity = 114/429 (26.57%), Postives = 176/429 (41.03%), Query Frame = 1
Query: 169 LVCA-GPGPMGRAWLSDVVWDERQRARRPQLIMSQRDMELFVTKEATPRPVLRARVVTEAGREDSAVLTDRENKLRMAEDKAQRLASAARATG---------FNYSADTTVKGISTDRTMRPVE------VAPPVHAPPAAEKMLLR--VPRPEEVRAFRRPRVARLLSSGQRLLLKSLGAKAAGGQMEMVTLRGGRT--------MSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKP-----PERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTD---------FLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMF 1335
L CA P WL+ + WD ++I+ + D L +T A L E KL + E K ++L R + +T +++D R + V H+ PA + L + +P+P+ +R F RPR +RL+L + AK A E VT T +S +++ DL P + IL+EY+E+RPP+L GMASR++++WR A S +G +K P GQ L P +++PF+G++ AG + S+ + L++ P+FEH R + FLL R K V K + E+P +YVAGQ EPQ EV AP++ F Y+ +HI R+F
Sbjct: 278 LDCALNPSLEDDTWLNSIAWDHCMDMPESEVILDENDTHLILTNPLVENV--------------RATLRIPERKLGVHEKKQEQLNKQKREKNDRINDVMGNLTFGENTAEGRLASDELKRNKDTRIVKHVGHVHHSLPAIKLSLTKPELPKPK-LREFHRPRGK--FKINERLVL--VHAKDA----EKVTKASKNTELDVNDPALSQIKKTSDLNP-TAGGKLILLEYIEQRPPMLSNPGMASRILHYWRPPESD---------------TANDPSSKGKGKKKDRKLETPSVSLGQVVTLGPNDDTPFIGDVPAGKMVTSLNSRLFKIPIFEHQPRGSMLERSNEFDYFLLARSVSKKGGV---------------KGGTTTYLMELPSLYVAGQVEPQMEVPAPNSRGANDFIRPYMSFHILRLF 652
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: M4BEB5_HYAAE (Bromo domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BEB5_HYAAE) HSP 1 Score: 92.0 bits (227), Expect = 8.620e-16 Identity = 87/285 (30.53%), Postives = 133/285 (46.67%), Query Frame = 1
Query: 526 HAPPAAEKMLLRVPRPE-EVRAFRRPRVARLLSSGQRLLLKSLGAKAAGGQMEMVTLRGGRTMSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHS----------ARDTD----FLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMF 1335
H+ PA + L + P+ ++R F RPR +S GA Q + + + +++ DL P + IL+EY E+RPP+L GMASR++++WR + AR+ KPP+ GQ L +ESPF+G+I G V S+ ++LY+ P+F H AR+ + FL+ R K K +AAE K L + + E+P V+VAGQ EPQ EV AP++ + F Y+ +HI R+F
Sbjct: 462 HSLPAIKLSLTKPELPKTKLRDFHRPRGKFKISERLDFYPPPSGAAKLAPQEDSAMV------TQIKKSSDLSP-TAGGKLILIEYTEQRPPMLSNPGMASRILHYWRPPEDTSTSLGILGK-----KKARKTR------PKPPDMEMGQVITLGDHDESPFVGDIPPGRVVTSLNSKLYKVPIFPHKPTVPFAASAEARERNNSDMFLMCRSVTKGK-----KGSAAE-KSGGLGVSTTVYIMELPTVFVAGQIEPQIEVPAPNSRSANEFIRPYMSFHILRLF 722
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: A0A397UXI7_9GLOM (Uncharacterized protein n=3 Tax=Gigaspora TaxID=4873 RepID=A0A397UXI7_9GLOM) HSP 1 Score: 82.8 bits (203), Expect = 6.770e-13 Identity = 66/192 (34.38%), Postives = 90/192 (46.88%), Query Frame = 1
Query: 703 RTMSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFM--GEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAP 1272
R MR +DL + ++ F+L EY EE PP+L GM S ++N++R T D PE G P L+ +ESPFM G++ G V PS+ N L RAPLF H A+DTDFL+IR K+ KP+ V+EI ++V GQT P +EV +P
Sbjct: 524 RKREEMRSPKDLT-LKDNSNFVLFEYSEEYPPILSNIGMGSLLLNYYRKTDPY--------------------------DTYVPELNVGDPVILDMMDESPFMNFGDVERGQVIPSLFNNLIRAPLFSHDAKDTDFLVIRHTYKA-------------KPK-------YYVREIKNLFVVGQTFPMQEVPSP 668
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: A0A2P2MNF7_RHIMU (Ubiquitin-like domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MNF7_RHIMU) HSP 1 Score: 81.6 bits (200), Expect = 1.440e-12 Identity = 64/210 (30.48%), Postives = 94/210 (44.76%), Query Frame = 1
Query: 769 LVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMFSSQEKKGM----SAMELRAMF 1386
L+EY EERP LL GM + + + + + + R + G LEP ++SPF+G+I AG Q S+ +Y+AP+F H TD+LL+R +A+GK V+ I R+ V GQ EP EVF+P + N++A+ L ++ R F + EK GM A EL A F
Sbjct: 780 LMEYCEERPLLLSNAGMGANLCTYHQKSSPGDQTGV----------LLRNGNHSL-----------GNVAILEPNDKSPFLGDITAGCSQSSLQTNMYKAPVFPHKVPSTDYLLVR--------------SAKGKLS---------VRRIDRIAVVGQQEPLMEVFSPGSKNLQAYITQRLLVYVYREFQAAEKSGMIPWIRADELSAQF 945
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: A0A2P2MNG2_RHIMU (Transcription initiation factor TFIID subunit 1 isoform X2 n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MNG2_RHIMU) HSP 1 Score: 81.6 bits (200), Expect = 1.760e-12 Identity = 64/210 (30.48%), Postives = 94/210 (44.76%), Query Frame = 1
Query: 769 LVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMFSSQEKKGM----SAMELRAMF 1386
L+EY EERP LL GM + + + + + + R + G LEP ++SPF+G+I AG Q S+ +Y+AP+F H TD+LL+R +A+GK V+ I R+ V GQ EP EVF+P + N++A+ L ++ R F + EK GM A EL A F
Sbjct: 780 LMEYCEERPLLLSNAGMGANLCTYHQKSSPGDQTGV----------LLRNGNHSL-----------GNVAILEPNDKSPFLGDITAGCSQSSLQTNMYKAPVFPHKVPSTDYLLVR--------------SAKGKLS---------VRRIDRIAVVGQQEPLMEVFSPGSKNLQAYITQRLLVYVYREFQAAEKSGMIPWIRADELSAQF 945
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Match: A0A7E5V9L8_TRINI (transcription initiation factor TFIID subunit 1 isoform X1 n=3 Tax=Trichoplusia ni TaxID=7111 RepID=A0A7E5V9L8_TRINI) HSP 1 Score: 80.5 bits (197), Expect = 4.060e-12 Identity = 88/312 (28.21%), Postives = 130/312 (41.67%), Query Frame = 1
Query: 571 PEEVRAFRRPRVARLLSSGQ---------RLLLKSLGAKAAGGQMEMVTLRGGRTMSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQE-----ESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREPPKSSAVAAAKAAAAEGKPEKLKLPYVNIVKEIPRVYVAGQTEPQREVFAPDADNVRAFQVTYLKYHIARMF--------------------SSQEKKGMSAMELRAMFKATGID 1404
P +RAF RP + R LS G + LLK + KA + E + GG + MR DL + +LVE+ EE PPL+ GM S++ N+++ R A + S G+ K D P+ L+ E SPF+G + G QP I N +YRAP++EH+ + TDFL+IR + Y ++E+ ++VAGQ P EV P++ F +L+ I R+F S E ++L A FK TG+D
Sbjct: 604 PARLRAFHRPAM-RKLSYGPLAAPGPHPVQPLLKHIKKKAKQREAERLASGGG-DVFFMRTPEDLSGRD--GELVLVEFCEEHPPLISQVGMCSKIKNYYK-------------------RTAAKGSKRGTGNSK-----DEGPKPLKYGEVAYAHTSPFLGILPPGATQPVIENNMYRAPIYEHTLQSTDFLIIRT----------------------RQSYY--IREVDALFVAGQECPLYEVPGPNSKRANNFVRDFLQVFIYRLFWKSRDKPRRIKMDDIKRAFPSHSESSIRKRLKLCADFKRTGLD 863 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151889 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10803 ID=mRNA_10803|Name=jgi.p|Trimin1|151889|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1521bp|location=Sequence derived from alignment at Contig_101:262798..267852- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGAGGTGGAGTCGGAGGACGAGGAGGGCAATGTGACGATGCGGCGGGTback to top protein sequence of jgi.p|Trimin1|151889 >Trimin1|151889|gw1.101.103.1 ID=Trimin1|151889|gw1.101.103.1|Name=jgi.p|Trimin1|151889|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=507bp MEVESEDEEGNVTMRRVPTGAAAAAAAAAPAAAGARMGPPAPVSGGAAAKback to top mRNA from alignment at Contig_101:262798..267852- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10803 ID=mRNA_10803|Name=jgi.p|Trimin1|151889|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5055bp|location=Sequence derived from alignment at Contig_101:262798..267852- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_101:262798..267852- >mRNA_10803 ID=mRNA_10803|Name=jgi.p|Trimin1|151889|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1521bp|location=Sequence derived from alignment at Contig_101:262798..267852- (Tribonema minus UTEX_B_3156 )back to top |