mRNA_10795 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173231
Unique NamemRNA_10795
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173231 vs. uniprot
Match: A0A835ZI08_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI08_9STRA)

HSP 1 Score: 527 bits (1357), Expect = 6.210e-189
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1 
Query:    1 MAAAAXXXXXXXXXXPTATPLSLGTPRTAAFANAAARDAPVETANGTRLEDLTLDGGFVTEVFAGVTRSDVACLSCGHVSSTYERFLDLNNSPGNFNSDGEGREEAPVTLQQCLEGFTAVEELGGGLKCDACSGGGCAKTKQMSFCALPVVLVVHIKRFDALHDRKLDDPVAFPLQLDMGPFLSGWVKGAGGGEGGGQGVPPPRLPYDLFAVINHSGSLSQGHYTCHVQEGQAWYRCDDALVAEVQESEVLDSQGYILFYRRHATSNWA 807
            MAAAAXXXXXXXXXXPTATPLSLGTPRTAAFANAAARDAPVETANGTRLEDLTLDGGFVTEVFAGVTRSDVACLSCGHVSSTYERFLDLNNSPGNFNSDGEGREEAPVTLQQCLEGFTAVEELGGGLKCDACSGGGCAKTKQMSFCALPVVLVVHIKRFDALHDRKLDDPVAFPLQLDMGPFLSGWVKGAGGGEGGGQGVPPPRLPYDLFAVINHSGSLSQGHYTCHVQEGQAWYRCDDALVAEVQESEVLDSQGYILFYRRHATSNWA
Sbjct:    1 MAAAAXXXXXXXXXXPTATPLSLGTPRTAAFANAAARDAPVETANGTRLEDLTLDGGFVTEVFAGVTRSDVACLSCGHVSSTYERFLDLNNSPGNFNSDGEGREEAPVTLQQCLEGFTAVEELGGGLKCDACSGGGCAKTKQMSFCALPVVLVVHIKRFDALHDRKLDDPVAFPLQLDMGPFLSGWVKGAGGGEGGGQGVPPPRLPYDLFAVINHSGSLSQGHYTCHVQEGQAWYRCDDALVAEVQESEVLDSQGYILFYRRHATSNWA 269
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BLAST of jgi.p|Trimin1|173231 vs. uniprot
Match: D7FIM1_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM1_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 4.630e-41
Identity = 88/198 (44.44%), Postives = 111/198 (56.06%), Query Frame = 1 
Query:  325 TLQQCLEGFTAVEELGGGLKCDACSGGGCAKTKQMSFCALPVVLVVHIKRFDALHDRKLDDPVAFPLQ-LDMGPFLSGWVKGAGGGEGGG------------------QGVPP------------------PRLPYDLFAVINHSGSLSQGHYTCHVQEGQAWYRCDDALVAEVQESEVLDSQGYILFY-RRHATSNW 804
            ++  C   F A E L   + CD+CS     KTKQMSFC+LP VLV+H+KRFDA+ DRK+DD V+FP + LDMG +L+GW   A     GG                  +G PP                  P LPYDL AV+NHSG ++QGHYT  V+E   W+R DD  V EV+E EVL S+ YILFY +R A + W
Sbjct:  906 SITDCFARFAARESLTVRMACDSCSAASVCKTKQMSFCSLPRVLVLHLKRFDAMADRKIDDFVSFPARGLDMGKYLTGWPAAAASSSAGGVTSGASPSSSPPLDTGTAKGAPPATPAAAGAKAELSGDVPAPSLPYDLLAVVNHSGGMAQGHYTAFVKEIGRWFRFDDTWVHEVEEEEVLSSEAYILFYFQRGADAAW 1103
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BLAST of jgi.p|Trimin1|173231 vs. uniprot
Match: F0YML3_AURAN (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YML3_AURAN)

HSP 1 Score: 154 bits (390), Expect = 6.880e-40
Identity = 91/210 (43.33%), Postives = 120/210 (57.14%), Query Frame = 1 
Query:  172 FVTEVFAGVTRSDVACLSCGHVSSTYERFLDLNNSPGNFNSDGEGREEA-PVTLQQCLEGFTAVEELGGGLKCDACSGGGCA--KTKQMSFCALPVVLVVHIKRFDALHDRKLDDPVAFPLQ--LDMGPFLSGWVKGAGGGEGGGQGVPPPRLPYDLFAVINHSGSLSQGHYTCHVQEGQAWYRCDDALVAEVQESEVLDSQGYILFYRR 786
            F+ + F G+ RSDV C +CG  SS  E F DL+   G+        E A P+ L+ CL  FT+VE L   +    CSG G A  + KQ++  ALP VL+VH+KRFDAL  RK+ + V FP    LD+GPFLS W   A         +P P L Y+L AV+NH G  ++GHYT  V++G  W+ CDD  +  V    V  S+GY+LFY R
Sbjct:  334 FIHKTFRGLFRSDVVCTACGTTSSYTEPFFDLSVPVGDTARQNVDAEPARPLCLEDCLAHFTSVEVL---VDAHICSGCGAAVKREKQLTIEALPNVLIVHLKRFDALGSRKVTEVVDFPTDSPLDLGPFLSKWRAKANNKSS----LPTPHL-YELNAVVNHHGDANKGHYTSFVKDGGLWFLCDDHSIKHVDLETVKHSEGYLLFYIR 535
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BLAST of jgi.p|Trimin1|173231 vs. uniprot
Match: A0A1B6C3K7_9HEMI (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6C3K7_9HEMI)

HSP 1 Score: 144 bits (363), Expect = 3.340e-36
Identity = 88/221 (39.82%), Postives = 116/221 (52.49%), Query Frame = 1 
Query:  175 VTEVFAGVTRSDVACLSCGHVSSTYERFLDLN--------NSPGNFNSDGEGREEAPVTLQQCLEGFTAVEELGGG--LKCDACSGGGCAKTKQMSFCALPVVLVVHIKRFD--ALHDRKLDDPVAFPLQLDMGPFLSGWVKGAGGGEGGGQGVPPPRL----PYDLFAVINHSGSLSQGHYTCHV-QEGQAWYRCDDALVAEVQESEVLDSQGYILFYRR 786
            + ++F G  +SDV C SC  VS+T + F D++          P N   D       P+ L QCLE FT  E LG    +KC+ C G     TKQ+S   LPVV   H+KRF+    H +K+   VAFP QLDM PF+S   K         + +  P       Y LFAVINH GSL+ GHYT  + Q+   W++CDD  +      EVLDS+GY+LFY +
Sbjct:  292 IDQIFTGELQSDVVCQSCNGVSTTIDPFWDISLDLGGNGYELPPNIGVDS----LTPMGLVQCLEFFTRAEHLGSAAKIKCNNC-GSYQESTKQLSMKTLPVVACFHLKRFEHSKAHRKKISTIVAFPEQLDMSPFMSHNRKNHNNNFDAARPIFTPLSLEDNRYSLFAVINHEGSLNSGHYTSFIRQQHDHWFKCDDPRITRANLKEVLDSEGYLLFYHK 507
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BLAST of jgi.p|Trimin1|173231 vs. uniprot
Match: UPI0008F9ABDF (ubiquitin carboxyl-terminal hydrolase 22 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9ABDF)

HSP 1 Score: 143 bits (361), Expect = 5.220e-36
Identity = 81/213 (38.03%), Postives = 123/213 (57.75%), Query Frame = 1 
Query:  175 VTEVFAGVTRSDVACLSCGHVSSTYERFLDLN-NSPGNFNSDGEGREEAPVTLQQCLEGFTAVEELGGGLKCDACSGGGCAKTKQMSFCALPVVLVVHIKRFD--ALHDRKLDDPVAFPLQLDMGPFLSGWVKGAGGGEGGGQGVPPPRLP-----YDLFAVINHSGSLSQGHYTCHVQEGQ-AWYRCDDALVAEVQESEVLDSQGYILFYRR 786
            + ++F G  +SDV C +C  VS+T + F D++ +  G    + E +++ P+TL  CL  FT  E LG  +KC+ C+      TKQ+S   LPVV   H+KRF+   +  +K+   V+FP  LDM PFLS   +    G      + PP L      Y LFAV+NH GSL  GHYT  ++  +  W++C+D  + +V++S+VL S+GY+LFY +
Sbjct:  284 IDQIFTGDLQSDVVCQACNGVSTTVDPFWDISLDLSGGVAVEKETKDQKPLTLADCLRQFTRQEHLGSKIKCNNCNSYQ-ESTKQLSMQKLPVVACFHLKRFEHSKIVKKKITTSVSFPEFLDMTPFLSEHRQAVANGLD----LYPPHLSSEDNRYSLFAVVNHIGSLDLGHYTAFIRHKKDQWFKCNDDHITQVKKSDVLASEGYLLFYHK 491
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BLAST of jgi.p|Trimin1|173231 vs. uniprot
Match: A0A293LWW2_ORNER (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=2 Tax=Ornithodoros TaxID=6937 RepID=A0A293LWW2_ORNER)

HSP 1 Score: 141 bits (356), Expect = 2.870e-35
Identity = 85/219 (38.81%), Postives = 117/219 (53.42%), Query Frame = 1 
Query:  175 VTEVFAGVTRSDVACLSCGHVSSTYERFLDLNNSPGNFNS-------DGEGREEAPVTLQQCLEGFTAVEELGGGLK--CDACSGGGCAKTKQMSFCALPVVLVVHIKRFD--ALHDRKLDDPVAFPLQLDMGPFLSGWVKGAGGGEGGGQGVPPPRL---PYDLFAVINHSGSLSQGHYTCHV-QEGQAWYRCDDALVAEVQESEVLDSQGYILFYRR 786
            + ++F G  +SDV C SC  VS+T + F D++   G  +        +GE  +  P +L  CLE FT  E LG   K  C  C       TKQ++   LPVV   H+KRF+      +K+   V+FP  LDM PF+S   +GA    G      PPR     Y LFAV+NHSG++  GHYT +V Q    W++CDD L+      +VLDS+GY+LFY +
Sbjct:  280 IDQIFTGGLQSDVVCQSCKGVSTTIDPFWDISLDLGPNSCLQQVAVPEGESDDTEPTSLLDCLERFTRPEHLGSSAKIRCGRCQSYQ-ESTKQLTMKKLPVVCSFHLKRFEHSTRFHKKISSLVSFPQYLDMSPFMSAG-RGASSTTGPLLSPSPPRCHDNKYCLFAVVNHSGTIETGHYTAYVRQHRDRWFKCDDHLITRATVQDVLDSEGYLLFYHK 496
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BLAST of jgi.p|Trimin1|173231 vs. uniprot
Match: A0A6J2JF41_BOMMA (Ubiquitin carboxyl-terminal hydrolase n=24 Tax=Ditrysia TaxID=37567 RepID=A0A6J2JF41_BOMMA)

HSP 1 Score: 141 bits (355), Expect = 3.320e-35
Identity = 80/212 (37.74%), Postives = 114/212 (53.77%), Query Frame = 1 
Query:  175 VTEVFAGVTRSDVACLSCGHVSSTYERFLDLNNSPGNFNSDGEGREEAPVTLQQCLEGFTAVEELGGG--LKCDACSGGGCAKTKQMSFCALPVVLVVHIKRFD--ALHDRKLDDPVAFPLQLDMGPFLSGWVKGAGGGEGGGQGVPPPRLP---YDLFAVINHSGSLSQGHYTCHVQEGQ-AWYRCDDALVAEVQESEVLDSQGYILFYRR 786
            + ++F G  +SDV C SC  VS+T + F D++                P +LQ CLE FT  E LG    +KC  C       TKQ++   LP+V   H+KRF+  +  DRK+   V+FP +LDM PF+S   +    G       P        Y LFAV+NH GSL  GHYT +V++ + +W++CDD ++      EVLDS+GY+LFY +
Sbjct:  279 IDQIFTGGLQSDVVCTSCSGVSTTIDPFWDISLDVA-----------GPGSLQACLERFTRAEHLGSAAKIKCSNCRAYR-ESTKQLTLETLPIVASFHLKRFEHSSQIDRKISAFVSFPAELDMTPFMSSHRRAVDVGAAENNNTPEGMFEDNRYSLFAVVNHLGSLDAGHYTAYVRQMKGSWFKCDDHMITRASLREVLDSEGYLLFYHK 478
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BLAST of jgi.p|Trimin1|173231 vs. uniprot
Match: UPI0005D09EBB (ubiquitin carboxyl-terminal hydrolase nonstop n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0005D09EBB)

HSP 1 Score: 140 bits (354), Expect = 4.490e-35
Identity = 81/211 (38.39%), Postives = 117/211 (55.45%), Query Frame = 1 
Query:  175 VTEVFAGVTRSDVACLSCGHVSSTYERFLDLNNSPGNFNSDGEGREEAPVTLQQCLEGFTAVEELGGG--LKCDACSGGGCAKTKQMSFCALPVVLVVHIKRFDALH--DRKLDDPVAFPLQLDMGPFLSGWVKGAGGGEG--GGQGVPPPRLPYDLFAVINHSGSLSQGHYTCHVQEGQ-AWYRCDDALVAEVQESEVLDSQGYILFYRR 786
            + ++F G  +SDV C  C  VS+T + F D++                P +LQ CLE FT  E LG G  +KC  C       TKQ++   LP+V   H+KRF+     DRK+   V+FP +LDM PF+S   +     +   G +GV      Y LFAV+NH GSL  GHYT +V++ + +W++CDD ++     +EVLDS+GY+LFY +
Sbjct:  280 IDQIFTGGLQSDVVCTCCSGVSTTIDPFWDISLDVA-----------GPGSLQACLERFTRAEHLGSGAKIKCSNCRAYR-ESTKQLTLETLPIVASFHLKRFEHSEQIDRKISTFVSFPAELDMTPFMSSHRRAVDTADNNNGPEGVFEDNR-YSLFAVVNHLGSLDAGHYTAYVRQMKGSWFKCDDHMITRADLAEVLDSEGYLLFYHK 477
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BLAST of jgi.p|Trimin1|173231 vs. uniprot
Match: UPI001747B296 (ubiquitin carboxyl-terminal hydrolase 22 isoform X4 n=1 Tax=Molossus molossus TaxID=27622 RepID=UPI001747B296)

HSP 1 Score: 139 bits (350), Expect = 6.120e-35
Identity = 84/227 (37.00%), Postives = 120/227 (52.86%), Query Frame = 1 
Query:  175 VTEVFAGVTRSDVACLSCGHVSSTYERFLDLNN------------SPGNFNS--DGEGREEAPVTLQQCLEGFTAVEELGGG--LKCDACSGGGCAKTKQMSFCALPVVLVVHIKRFD--ALHDRKLDDPVAFPLQLDMGPFLSGWVKGAGGGEGGGQGVPPPRLP----YDLFAVINHSGSLSQGHYTCHV-QEGQAWYRCDDALVAEVQESEVLDSQGYILFYRR 786
            + ++F G  +SDV C  C  VS+T + F D++             SPG+  S  +GE       TL  CL  FT  E LG    +KC  C       TKQ++   LP+V   H+KRF+  A   RK+   V+FPL+LDM PF++   +    G+      PP  L     Y LFAV+NH G+L  GHYT  + Q    W++CDDA++ +   ++VLDS+GY+LFY +
Sbjct:  191 IDQIFTGGLQSDVTCQVCHGVSTTIDPFWDISLDLPGSSTPFWPLSPGSEGSVVNGESHASGTTTLTDCLRRFTRPEHLGSSAKIKCSGCHSYQ-ESTKQLTMKKLPIVACFHLKRFEHSAKLRRKITTYVSFPLELDMTPFMASSKESRMNGQ---YQQPPDSLSNDNKYSLFAVVNHQGTLESGHYTSFIRQHKDQWFKCDDAIITKASIADVLDSEGYLLFYHK 413
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BLAST of jgi.p|Trimin1|173231 vs. uniprot
Match: UPI0005AB9875 (ubiquitin carboxyl-terminal hydrolase 51 isoform X1 n=1 Tax=Mus musculus TaxID=10090 RepID=UPI0005AB9875)

HSP 1 Score: 138 bits (347), Expect = 1.550e-34
Identity = 82/218 (37.61%), Postives = 122/218 (55.96%), Query Frame = 1 
Query:  175 VTEVFAGVTRSDVACLSCGHVSSTYERFLDLN-NSPGNFN--------SDGEGREEAPVTLQQCLEGFTAVEELGGG--LKCDACSGGGCAKTKQMSFCALPVVLVVHIKRFDAL--HDRKLDDPVAFPLQLDMGPFLSGWVKGAGGGEGGGQGVPPPRLPYDLFAVINHSGSLSQGHYTCHV-QEGQAWYRCDDALVAEVQESEVLDSQGYILFYRR 786
            +  +F G  +SD+ C  C  VS+T +   D++ + PG +         S  +G++   ++L  CL+ FT  E+LG    +KC  C       TKQ++   LP+V   H+KRF+ L    RK++  ++FPL+LDM PFL+   +    G+   + VP     Y LFAVINH G+L  GHYT  V QE   W+ CDDA+V +    E+L+S+GY+LFY R
Sbjct:  194 IDHIFTGSLQSDLTCQVCHGVSTTIDPCWDISLDLPGPYTPGRASSSTSSRDGQKPRVISLTDCLKWFTRPEDLGSSAKIKCSQCQSYQ-ESTKQLTMKKLPIVACFHLKRFEHLGKQRRKINSFISFPLELDMTPFLASTKESIMKGQPLTECVPSENK-YSLFAVINHHGTLESGHYTSFVRQEKDQWFSCDDAVVTKATMEELLNSEGYLLFYHR 409
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173231 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZI08_9STRA6.210e-189100.00USP domain-containing protein n=1 Tax=Tribonema mi... [more]
D7FIM1_ECTSI4.630e-4144.44Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
F0YML3_AURAN6.880e-4043.33Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aure... [more]
A0A1B6C3K7_9HEMI3.340e-3639.82Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
UPI0008F9ABDF5.220e-3638.03ubiquitin carboxyl-terminal hydrolase 22 n=1 Tax=B... [more]
A0A293LWW2_ORNER2.870e-3538.81Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A6J2JF41_BOMMA3.320e-3537.74Ubiquitin carboxyl-terminal hydrolase n=24 Tax=Dit... [more]
UPI0005D09EBB4.490e-3538.39ubiquitin carboxyl-terminal hydrolase nonstop n=1 ... [more]
UPI001747B2966.120e-3537.00ubiquitin carboxyl-terminal hydrolase 22 isoform X... [more]
UPI0005AB98751.550e-3437.61ubiquitin carboxyl-terminal hydrolase 51 isoform X... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_101contigContig_101:194889..195962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173231|e_gw1.101.6.1
BRITEko00000,ko01000,ko01002,ko03021,ko03036,ko04121
KEGG koko:K11366,ko:K11848,ko:K11873
EC3.4.19.12
GOsGO:0000018,GO:0000123,GO:0000124,GO:0000902,GO:0000904,GO:0003674,GO:0003682,GO:0003712,GO:0003713,GO:0003824,GO:0004843,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006282,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006357,GO:0006396,GO:0006464,GO:0006473,GO:0006475,GO:0006479,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007154,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007411,GO:0007412,GO:0008150,GO:0008152,GO:0008213,GO:0008233,GO:0008234,GO:0008347,GO:0008380,GO:0009056,GO:0009057,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010001,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010569,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010941,GO:0010942,GO:0016043,GO:0016070,GO:0016458,GO:0016477,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016574,GO:0016578,GO:0016579,GO:0016604,GO:0016607,GO:0016787,GO:0018022,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019899,GO:0019941,GO:0021782,GO:0022008,GO:0030030,GO:0030154,GO:0030163,GO:0030182,GO:0030374,GO:0031175,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031647,GO:0031974,GO:0031981,GO:0032259,GO:0032446,GO:0032501,GO:0032502,GO:0032947,GO:0032989,GO:0032990,GO:0032991,GO:0034641,GO:0034729,GO:0034968,GO:0035616,GO:0036211,GO:0036459,GO:0040011,GO:0040029,GO:0042063,GO:0042221,GO:0042330,GO:0042393,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043543,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045787,GO:0045814,GO:0045892,GO:0045893,GO:0045931,GO:0045934,GO:0045935,GO:0046483,GO:0046695,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051603,GO:0051674,GO:0051726,GO:0060255,GO:0061564,GO:0061578,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070461,GO:0070536,GO:0070646,GO:0070647,GO:0071108,GO:0071704,GO:0071819,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097485,GO:0099114,GO:0101005,GO:0120036,GO:0120039,GO:0140096,GO:0140110,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902493,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905368,GO:1990234,GO:1990380,GO:2000112,GO:2000113,GO:2000779,GO:2001020,GO:2001032,GO:2001141
Preferred nameUSP22
Descriptionubiquitinyl hydrolase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5560@1|root,KOG1867@1|root,KOG1867@2759|Eukaryota,KOG1870@2759|Eukaryota
Evalue7.59e-42
Seed ortholog2880.D7FIM1
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-27_000270.1
TranscriptId173553
TrackFilteredModels1
ProteinId173231
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173231gene_10795Tribonema minus UTEX_B_3156 geneContig_101 194889..195962 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10795_1exon_10795_1Tribonema minus UTEX_B_3156 exonContig_101 194889..195152 +
exon_10795_2exon_10795_2Tribonema minus UTEX_B_3156 exonContig_101 195417..195962 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10795CDS_10795Tribonema minus UTEX_B_3156 CDSContig_101 194889..195152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173231Trimin1|173231|e_gw1.101.6.1Tribonema minus UTEX_B_3156 polypeptideContig_101 194889..195962 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10795 ID=mRNA_10795|Name=jgi.p|Trimin1|173231|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=810bp|location=Sequence derived from alignment at Contig_101:194889..195962+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCTGCCGCCGCCGCTGCTGCCGCCGCCGCTGCCGCCGCGCCCAC
TGCCACCCCTCTCAGCCTCGGCACGCCCCGAACGGCGGCCTTCGCGAATG
CCGCTGCGAGAGATGCGCCAGTGGAGACGGCGAACGGCACGCGCCTGGAG
GACCTGACGCTGGACGGCGGTTTCGTAACAGAAGTCTTCGCGGGGGTCAC
GCGCTCCGATGTGGCGTGCCTGTCGTGCGGCCACGTGTCGAGCACGTACG
AGCGCTTTCTGGACCTCAACAACAGTCCCGGCAACTTCAACAGTGACGGG
GAGGGCAGGGAGGAGGCCCCCGTCACGCTGCAGCAGTGCTTGGAGGGGTT
CACGGCGGTGGAGGAGCTGGGGGGGGGGCTCAAGTGCGACGCCTGCAGCG
GCGGGGGGTGCGCCAAGACCAAGCAGATGTCGTTCTGCGCGCTGCCGGTG
GTGCTGGTGGTGCACATCAAGCGCTTCGACGCGCTGCACGACCGCAAGCT
AGATGATCCCGTAGCCTTCCCCCTGCAGCTGGACATGGGCCCCTTTTTGA
GCGGCTGGGTCAAGGGGGCAGGGGGGGGGGAAGGGGGGGGGCAGGGGGTC
CCCCCGCCCCGACTGCCGTATGATCTGTTTGCAGTCATCAACCACAGCGG
GTCGCTGTCTCAGGGGCACTACACGTGCCACGTGCAGGAGGGGCAGGCGT
GGTACCGCTGCGACGACGCGCTGGTTGCGGAGGTGCAGGAGTCGGAGGTG
CTCGATAGCCAGGGGTACATACTGTTCTACCGCCGCCACGCCACGTCGAA
CTGGGCGTGA
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protein sequence of jgi.p|Trimin1|173231

>Trimin1|173231|e_gw1.101.6.1 ID=Trimin1|173231|e_gw1.101.6.1|Name=jgi.p|Trimin1|173231|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=270bp
MAAAAAAAAAAAAAAPTATPLSLGTPRTAAFANAAARDAPVETANGTRLE
DLTLDGGFVTEVFAGVTRSDVACLSCGHVSSTYERFLDLNNSPGNFNSDG
EGREEAPVTLQQCLEGFTAVEELGGGLKCDACSGGGCAKTKQMSFCALPV
VLVVHIKRFDALHDRKLDDPVAFPLQLDMGPFLSGWVKGAGGGEGGGQGV
PPPRLPYDLFAVINHSGSLSQGHYTCHVQEGQAWYRCDDALVAEVQESEV
LDSQGYILFYRRHATSNWA*
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mRNA from alignment at Contig_101:194889..195962+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10795 ID=mRNA_10795|Name=jgi.p|Trimin1|173231|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1074bp|location=Sequence derived from alignment at Contig_101:194889..195962+ (Tribonema minus UTEX_B_3156 )
ATGGCCGCTGCCGCCGCCGCTGCTGCCGCCGCCGCTGCCGCCGCGCCCAC
TGCCACCCCTCTCAGCCTCGGCACGCCCCGAACGGCGGCCTTCGCGAATG
CCGCTGCGAGAGATGCGCCAGTGGAGACGGCGAACGGCACGCGCCTGGAG
GACCTGACGCTGGACGGCGGTTTCGTAACAGAAGTCTTCGCGGGGGTCAC
GCGCTCCGATGTGGCGTGCCTGTCGTGCGGCCACGTGTCGAGCACGTACG
AGCGCTTTCTGGACGTGAGCCTCAGCATTCACGGCCCCGCTGCGGCGCAC
GCGGCAGATGGCGGCGGCGAAGCTGGCGAGGGCAGCGCTATGGACGATGT
CTCTGTCCATGCTGCGCTGCTGCGGAGGTCGGAGGGGGGGCGGAGCGGAA
GGGCGGGGCGAGCGGGCTCTTTCGACCGCAGTTTGCCCGATCGCAGCAGG
GCGGCGAAGGGGGGGGGGCGGAGCGCCAACAGCACCCCTACGCGCGGCGT
CGGGGGCAGCGGCAGCAGGGCCAGCAAGCTCAACAACAGTCCCGGCAACT
TCAACAGTGACGGGGAGGGCAGGGAGGAGGCCCCCGTCACGCTGCAGCAG
TGCTTGGAGGGGTTCACGGCGGTGGAGGAGCTGGGGGGGGGGCTCAAGTG
CGACGCCTGCAGCGGCGGGGGGTGCGCCAAGACCAAGCAGATGTCGTTCT
GCGCGCTGCCGGTGGTGCTGGTGGTGCACATCAAGCGCTTCGACGCGCTG
CACGACCGCAAGCTAGATGATCCCGTAGCCTTCCCCCTGCAGCTGGACAT
GGGCCCCTTTTTGAGCGGCTGGGTCAAGGGGGCAGGGGGGGGGGAAGGGG
GGGGGCAGGGGGTCCCCCCGCCCCGACTGCCGTATGATCTGTTTGCAGTC
ATCAACCACAGCGGGTCGCTGTCTCAGGGGCACTACACGTGCCACGTGCA
GGAGGGGCAGGCGTGGTACCGCTGCGACGACGCGCTGGTTGCGGAGGTGC
AGGAGTCGGAGGTGCTCGATAGCCAGGGGTACATACTGTTCTACCGCCGC
CACGCCACGTCGAACTGGGCGTGA
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Coding sequence (CDS) from alignment at Contig_101:194889..195962+

>mRNA_10795 ID=mRNA_10795|Name=jgi.p|Trimin1|173231|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=810bp|location=Sequence derived from alignment at Contig_101:194889..195962+ (Tribonema minus UTEX_B_3156 )
ATGGCCGCTGCCGCCGCCGCTGCTGCCGCCGCCGCTGCCGCCGCGCCCAC
TGCCACCCCTCTCAGCCTCGGCACGCCCCGAACGGCGGCCTTCGCGAATG
CCGCTGCGAGAGATGCGCCAGTGGAGACGGCGAACGGCACGCGCCTGGAG
GACCTGACGCTGGACGGCGGTTTCGTAACAGAAGTCTTCGCGGGGGTCAC
GCGCTCCGATGTGGCGTGCCTGTCGTGCGGCCACGTGTCGAGCACGTACG
AGCGCTTTCTGGACCTCAACAACAGTCCCGGCAACTTCAACAGTGACGGG
GAGGGCAGGGAGGAGGCCCCCGTCACGCTGCAGCAGTGCTTGGAGGGGTT
CACGGCGGTGGAGGAGCTGGGGGGGGGGCTCAAGTGCGACGCCTGCAGCG
GCGGGGGGTGCGCCAAGACCAAGCAGATGTCGTTCTGCGCGCTGCCGGTG
GTGCTGGTGGTGCACATCAAGCGCTTCGACGCGCTGCACGACCGCAAGCT
AGATGATCCCGTAGCCTTCCCCCTGCAGCTGGACATGGGCCCCTTTTTGA
GCGGCTGGGTCAAGGGGGCAGGGGGGGGGGAAGGGGGGGGGCAGGGGGTC
CCCCCGCCCCGACTGCCGTATGATCTGTTTGCAGTCATCAACCACAGCGG
GTCGCTGTCTCAGGGGCACTACACGTGCCACGTGCAGGAGGGGCAGGCGT
GGTACCGCTGCGACGACGCGCTGGTTGCGGAGGTGCAGGAGTCGGAGGTG
CTCGATAGCCAGGGGTACATACTGTTCTACCGCCGCCACGCCACGTCGAA
CTGGGCGTGA
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