mRNA_10788 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|173288
Unique Name	mRNA_10788
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|173288 vs. uniprot
Match: A0A835ZGN1_9STRA (Splicing factor U2AF subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGN1_9STRA)

HSP 1 Score: 739 bits (1908), Expect = 7.730e-269
Identity = 390/390 (100.00%), Postives = 390/390 (100.00%), Query Frame = 1

Query:    1 KERGSNFDVLPEGMDEATANQIAAQAFLQQTLPAAAAAAAVPLPMGGGAAPTMQQTRHARRLYVGNIPRVPEQEVQRFFNEVLTRALGGRQESDPVVSVYLNQDRGFAFVELRSVALTTAAIQLDGLMYGDISLKIRRPSDYNPSAVPSEFTNEVVHLNLSALGIVSNTVPDSPNKVFIGGLPYHLTEEQVKELLSAFGALKALHLVKDAGATNSKGYAFCEYQDPAVTSIACEGLNGMALGDKTLTVRKVRGHALSVAALMLAQAMAALDPTAHKAVTESAEAATVVRTMAPTRVLVLMNMVGEEDLKDDQEYTDILEDVRDECKQYGELKTVIIPRPGETGVGKVFLEYAEVQQAQAAAMALAGRQFASKIVKAQYHDESRFAARDLA 1170
            KERGSNFDVLPEGMDEATANQIAAQAFLQQTLPAAAAAAAVPLPMGGGAAPTMQQTRHARRLYVGNIPRVPEQEVQRFFNEVLTRALGGRQESDPVVSVYLNQDRGFAFVELRSVALTTAAIQLDGLMYGDISLKIRRPSDYNPSAVPSEFTNEVVHLNLSALGIVSNTVPDSPNKVFIGGLPYHLTEEQVKELLSAFGALKALHLVKDAGATNSKGYAFCEYQDPAVTSIACEGLNGMALGDKTLTVRKVRGHALSVAALMLAQAMAALDPTAHKAVTESAEAATVVRTMAPTRVLVLMNMVGEEDLKDDQEYTDILEDVRDECKQYGELKTVIIPRPGETGVGKVFLEYAEVQQAQAAAMALAGRQFASKIVKAQYHDESRFAARDLA
Sbjct:    1 KERGSNFDVLPEGMDEATANQIAAQAFLQQTLPAAAAAAAVPLPMGGGAAPTMQQTRHARRLYVGNIPRVPEQEVQRFFNEVLTRALGGRQESDPVVSVYLNQDRGFAFVELRSVALTTAAIQLDGLMYGDISLKIRRPSDYNPSAVPSEFTNEVVHLNLSALGIVSNTVPDSPNKVFIGGLPYHLTEEQVKELLSAFGALKALHLVKDAGATNSKGYAFCEYQDPAVTSIACEGLNGMALGDKTLTVRKVRGHALSVAALMLAQAMAALDPTAHKAVTESAEAATVVRTMAPTRVLVLMNMVGEEDLKDDQEYTDILEDVRDECKQYGELKTVIIPRPGETGVGKVFLEYAEVQQAQAAAMALAGRQFASKIVKAQYHDESRFAARDLA 390

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BLAST of jgi.p|Trimin1|173288 vs. uniprot
Match: A0A8K1C271_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C271_PYTOL)

HSP 1 Score: 353 bits (907), Expect = 2.130e-114
Identity = 200/402 (49.75%), Postives = 266/402 (66.17%), Query Frame = 1

Query:   13 SNFDVLPEGMDEATANQIAAQAFLQQTLPAAAAAAAV----PLPMGGGAAPTMQQTRHARRLYVGNIPRVPEQEVQRFFNEVLTRALGGRQESDPVVSVYLNQDRGFAFVELRSVALTTAAIQLDGLMYGDISLKIRRPSDYNPSAVPSEFTNEVVHLNLSALGIVSNTVPDSPNKVFIGGLPYHLTEEQVKELLSAFGALKALHLVKDAGATNSKGYAFCEYQDPAVTSIACEGLNGMALGDKTLTVRKVRGHALSVAALMLAQAMAA-----LDPTAHKAVTESAEAATVVRTMAP----TRVLVLMNMVGEEDLKDDQEYTDILEDVRDECKQYGELKTVIIPRPGE---TGVGKVFLEYAEVQQAQAAAMALAGRQFASKIVKAQYHDESRFAARDLA 1170
            SNFDV P G+ E  A   AAQA LQQ + A + A       P P  G  + + QQTRHARR+YVG I  V EQE+  FFN+V+ RALG RQE   VVSVY+N++R FAFVEL+++ LTTA + LDG+ +    LKIRRP+DYNPS VP +    +  LNL+ALGIVS TV DSP+K+F+GG+PYHL ++QVKELL AFG LK+ HLVK+     SKGY FCEY DP VT  AC GLN M LGDKTLTVR+      + A    A ++ +     LDPT     T S     +    AP    +RV+VL+NMV  ++L+DD+EY DIL+D++ EC+++G + +++IPRP +   T VGKVF+E+A++  AQ A+  L GR FA++ V  ++ DE ++A RD +
Sbjct:  159 SNFDVRPPGVTEENAAAYAAQAILQQNMAALSGAVGPASFGPPPANGTYSASHQQTRHARRIYVGGIGEVAEQEITEFFNDVIDRALGERQEGGAVVSVYINRERHFAFVELKTIELTTACMNLDGVSFRGQPLKIRRPNDYNPSNVPKDL-GPIPQLNLAALGIVSTTVQDSPHKIFVGGIPYHLNDDQVKELLQAFGPLKSFHLVKELNTNMSKGYGFCEYLDPNVTDAACIGLNDMKLGDKTLTVRRAMSQENAKAVASAAGSVNSGLSMGLDPTTAALQTISMAGFGLGIPSAPLGNPSRVIVLLNMVTADELEDDEEYNDILDDIKTECERFGPVLSLVIPRPRDGYHTAVGKVFVEFADIASAQGASQELHGRGFANRTVSVEFMDEQKYARRDFS 559

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BLAST of jgi.p|Trimin1|173288 vs. uniprot
Match: F0WWX4_9STRA (Splicing factor U2AF subunit n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WWX4_9STRA)

HSP 1 Score: 350 bits (899), Expect = 2.840e-113
Identity = 202/405 (49.88%), Postives = 260/405 (64.20%), Query Frame = 1

Query:    7 RGSNFDVLPEGMDEATANQIAAQAFLQQTLPAAAAAAAVPLPMGGGAA---------PTMQQTRHARRLYVGNIPRVPEQEVQRFFNEVLTRALGGRQESDPVVSVYLNQDRGFAFVELRSVALTTAAIQLDGLMYGDISLKIRRPSDYNPSAVPSEFTNEVVHLNLSALGIVSNTVPDSPNKVFIGGLPYHLTEEQVKELLSAFGALKALHLVKDAGATNSKGYAFCEYQDPAVTSIACEGLNGMALGDKTLTVRKVRGHA-----LSVAALMLAQAMAALDPTAHKAVTESAEAATVVRTMAPTRVLVLMNMVGEEDLKDDQEYTDILEDVRDECKQYGELKTVIIPRP----GETGVGKVFLEYAEVQQAQAAAMALAGRQFASKIVKAQYHDESRFAARDL 1167
            R SNFDV P G+ E  A   AAQA LQ  + AA + A  P   G   +         P  QQTRHARR+YVG I  V E E+  FFN+V+ RALG RQE   VVSVY+N++R FAFVEL+S+ LTTA + LDG+ +    LK+RRP+DYNP  VP +    +  LNL+ALGIVS TV D P KVFIGG+PYHLTEEQ+KELL AFG LK+ HLVKD     SKGYAFCEY D  VT  AC GLN M LGD+TLTVR+           + A  + A     LDP+     T S     +    +P+RVLVL NMV  E+L+D+ EY DI++D+R EC++YG + T+I+PR     G+  +GKV++E+ ++  +QAAA  L GR FA+++V AQY +E++F  R+L
Sbjct:  150 RKSNFDVRPPGVTEENAAAYAAQAILQHNM-AALSGAVGPASFGPPPSNSTNQNFNTPMAQQTRHARRIYVGGIGEVNETEISAFFNDVIDRALGERQEGGAVVSVYINRERHFAFVELKSIELTTACMNLDGIAFRGQPLKVRRPNDYNPGLVPKDL-GPIPALNLAALGIVSTTVQDGPGKVFIGGIPYHLTEEQIKELLQAFGPLKSFHLVKDLTTNLSKGYAFCEYMDSGVTDAACIGLNDMKLGDRTLTVRRALSQESAKVIANAAGTVNAGVEMGLDPSRAAMQTISMAGVHLGPIGSPSRVLVLRNMVTPEELEDEDEYRDIMDDIRSECERYGRVTTIILPRAKEGYGDEALGKVYIEFGDISTSQAAANELHGRGFANRVVSAQYMEEAQFERREL 552

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BLAST of jgi.p|Trimin1|173288 vs. uniprot
Match: A0A0W8DGC9_PHYNI (Splicing factor U2AF subunit n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DGC9_PHYNI)

HSP 1 Score: 345 bits (886), Expect = 2.400e-112
Identity = 202/419 (48.21%), Postives = 261/419 (62.29%), Query Frame = 1

Query:   13 SNFDVLPEGMDEATANQIAAQAFLQQTL--------PAAAAAAAVPLPMGGGAAPTM-----------------QQTRHARRLYVGNIPRVPEQEVQRFFNEVLTRALGGRQESDPVVSVYLNQDRGFAFVELRSVALTTAAIQLDGLMYGDISLKIRRPSDYNPSAVPSEFTNEVVHLNLSALGIVSNTVPDSPNKVFIGGLPYHLTEEQVKELLSAFGALKALHLVKDAGATNSKGYAFCEYQDPAVTSIACEGLNGMALGDKTLTVRKVRGHALSVAALMLAQAM-----AALDPTAHKAVTESAEAATVVRTMAPTRVLVLMNMVGEEDLKDDQEYTDILEDVRDECKQYGELKTVIIPRPGE---TGVGKVFLEYAEVQQAQAAAMALAGRQFASKIVKAQYHDESRFAARDLA 1170
            SNFDV P G+ E  A   AAQA LQQ +        PA+  A   P P G   A  M                 QQTRHARRLYVG I  + E E+  FFN+V+ RALG +QE   VVSVY+N++R FAFVELRS+ LTTA + LDG+ Y    LKIRRP+DYNP+ VP +    +  LNL+ALGIVS TV D P K+FIGGLPYHL EEQVKELL AFG L++ HLVK+  +  SKGY FCEY D  VT  AC GLN M LGDKTLTVR+      + A    A  +       LDP+       S      V    P+RV+VL+NMV  E+L+D++EY DIL+D++ EC+++G + ++++PRP +   + VGKV++E+ +VQ AQAAA  L GR F+++ V  ++ DE ++A R LA
Sbjct:   57 SNFDVRPPGVTEENAAAYAAQAILQQNMAALSGSVGPASFGAPPNPTPTGNVPAAPMYSHSHAGPGYGFSSGMSQQTRHARRLYVGGIGEISEAEITAFFNDVIDRALGEKQEGGSVVSVYINRERHFAFVELRSIELTTACMNLDGVSYNGQPLKIRRPNDYNPATVPKDL-GPIPQLNLAALGIVSTTVSDGPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDINVTDAACLGLNDMRLGDKTLTVRRAMSQENAKAVASAAGTVNTGLEMGLDPSLAAMQAMSMAGIPSVPLGTPSRVIVLLNMVTPEELEDEEEYADILDDIKGECERFGAVPSLLLPRPRDGIPSAVGKVYVEFGDVQSAQAAATELHGRGFSNRTVAVEFMDEGKYARRQLA 474

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BLAST of jgi.p|Trimin1|173288 vs. uniprot
Match: A0A225WYT2_9STRA (Splicing factor U2AF subunit n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225WYT2_9STRA)

HSP 1 Score: 346 bits (888), Expect = 1.350e-111
Identity = 201/423 (47.52%), Postives = 263/423 (62.17%), Query Frame = 1

Query:    1 KERGSNFDVLPEGMDEATANQIAAQAFLQQTL--------PAAAAAAAVPLPMGGGAAPTM-----------------QQTRHARRLYVGNIPRVPEQEVQRFFNEVLTRALGGRQESDPVVSVYLNQDRGFAFVELRSVALTTAAIQLDGLMYGDISLKIRRPSDYNPSAVPSEFTNEVVHLNLSALGIVSNTVPDSPNKVFIGGLPYHLTEEQVKELLSAFGALKALHLVKDAGATNSKGYAFCEYQDPAVTSIACEGLNGMALGDKTLTVRKVRGHALSVAALMLAQAM-----AALDPTAHKAVTESAEAATVVRTMAPTRVLVLMNMVGEEDLKDDQEYTDILEDVRDECKQYGELKTVIIPRPGE---TGVGKVFLEYAEVQQAQAAAMALAGRQFASKIVKAQYHDESRFAARDLA 1170
            + + SNFDV P G+ E  A   AAQA LQQ +        PA+  A     P G  A+  +                 QQTRHARRLYVG I  + EQE+  FFN+V+ RALG +QE   VVSVY+N++R FAFVELR++ LTTA + LDG+ Y    LKIRRP+DYNP  VP +    +  LNL+ALGIVS TV D P K+FIGGLPYHL EEQVKELL AFG L++ HLVK+  +  SKGY FCEY D  VT  AC GLN M LGDKTLTVR+      + A    A  +       LDP+       S      V    P+RV+VL+NMV  E+L+D++EY DIL+D++ EC+++G + ++++PRP +   + VGKVF+E+ +VQ AQ AA  L GR F+++ V  +Y DE ++A R+LA
Sbjct:  134 RRKKSNFDVRPPGVTEENAAAYAAQAILQQNMAALSGSVGPASFGAPPTSTPTGNTASTPVYNHSHQASAGFAFAGQSQQTRHARRLYVGGIGEIAEQEITLFFNDVIDRALGEKQEGGSVVSVYINRERHFAFVELRTIELTTACMNLDGVSYNGQPLKIRRPNDYNPGTVPKDL-GPIPQLNLAALGIVSTTVSDGPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDINVTDAACLGLNDMRLGDKTLTVRRAMSQENAKAVASAAGTVNTGLEMGLDPSLAAMQAMSMAGIPSVPLGTPSRVIVLLNMVTPEELEDEEEYADILDDIKGECERFGAVSSLLLPRPRDGVLSAVGKVFVEFGDVQSAQGAATELHGRGFSNRTVAVEYMDEGKYARRELA 555

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BLAST of jgi.p|Trimin1|173288 vs. uniprot
Match: W2PYB1_PHYPN (Splicing factor U2AF subunit n=7 Tax=Phytophthora TaxID=4783 RepID=W2PYB1_PHYPN)

HSP 1 Score: 346 bits (887), Expect = 2.630e-111
Identity = 202/423 (47.75%), Postives = 263/423 (62.17%), Query Frame = 1

Query:    1 KERGSNFDVLPEGMDEATANQIAAQAFLQQTL--------PAAAAAAAVPLPMGGGAAPTM-----------------QQTRHARRLYVGNIPRVPEQEVQRFFNEVLTRALGGRQESDPVVSVYLNQDRGFAFVELRSVALTTAAIQLDGLMYGDISLKIRRPSDYNPSAVPSEFTNEVVHLNLSALGIVSNTVPDSPNKVFIGGLPYHLTEEQVKELLSAFGALKALHLVKDAGATNSKGYAFCEYQDPAVTSIACEGLNGMALGDKTLTVRKVRGHALSVAALMLAQAM-----AALDPTAHKAVTESAEAATVVRTMAPTRVLVLMNMVGEEDLKDDQEYTDILEDVRDECKQYGELKTVIIPRPGE---TGVGKVFLEYAEVQQAQAAAMALAGRQFASKIVKAQYHDESRFAARDLA 1170
            + + SNFDV P G+ E  A   AAQA LQQ +        PA+  A   P P G   A  M                 QQTRHARRLYVG I  + E E+  FFN+V+ RALG +QE   VVSVY+N++R FAFVELRS+ LTTA + LDG+ Y    LKIRRP+DYNP+ VP +    +  LNL+ALGIVS TV D P K+FIGGLPYHL EEQVKELL AFG L++ HLVK+  +  SKGY FCEY D  VT  AC GLN M LGDKTLTVR+      + A    A  +       LDP+       S      V    P+RV+VL+NMV  E+L+D++EY DIL+D++ EC+++G + ++++PRP +   + VGKV++E+ +VQ AQAAA  L GR F+++ V  ++ DE ++A R LA
Sbjct:  145 RRKKSNFDVRPPGVTEENAAAYAAQAILQQNMAALSGSVGPASFGAPPNPTPTGNVPAAPMYSHSHAGPGYGFSSGMSQQTRHARRLYVGGIGEISEAEITAFFNDVIDRALGEKQEGGSVVSVYINRERHFAFVELRSIELTTACMNLDGVSYNGQPLKIRRPNDYNPATVPKDL-GPIPQLNLAALGIVSTTVSDGPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDINVTDAACLGLNDMRLGDKTLTVRRAMSQENAKAVASAAGTVNTGLEMGLDPSLAAMQAMSMAGIPSVPLGTPSRVIVLLNMVTPEELEDEEEYADILDDIKGECERFGAVPSLLLPRPRDGIPSAVGKVYVEFGDVQSAQAAATELHGRGFSNRTVAVEFMDEGKYARRQLA 566

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BLAST of jgi.p|Trimin1|173288 vs. uniprot
Match: D0MXQ4_PHYIT (Splicing factor U2AF subunit n=3 Tax=Phytophthora TaxID=4783 RepID=D0MXQ4_PHYIT)

HSP 1 Score: 344 bits (883), Expect = 1.140e-110
Identity = 199/423 (47.04%), Postives = 265/423 (62.65%), Query Frame = 1

Query:    1 KERGSNFDVLPEGMDEATANQIAAQAFLQQTL-------------------------PAAAAAAAVPLPMGGGAAPTMQQTRHARRLYVGNIPRVPEQEVQRFFNEVLTRALGGRQESDPVVSVYLNQDRGFAFVELRSVALTTAAIQLDGLMYGDISLKIRRPSDYNPSAVPSEFTNEVVHLNLSALGIVSNTVPDSPNKVFIGGLPYHLTEEQVKELLSAFGALKALHLVKDAGATNSKGYAFCEYQDPAVTSIACEGLNGMALGDKTLTVRKVRGHALSVAALMLAQAM-----AALDPTAHKAVTESAEAATVVRTMAPTRVLVLMNMVGEEDLKDDQEYTDILEDVRDECKQYGELKTVIIPRPGE---TGVGKVFLEYAEVQQAQAAAMALAGRQFASKIVKAQYHDESRFAARDLA 1170
            + + SNFDV P G+ E  A   AAQA LQQ +                         PA+    + P P  G ++   QQTRHARRLYVG I  + E E+  FFN+V+ RALG +QE   VVSVY+N++R FAFVELRS+ LTTA + LDG+ Y    LKIRRP+DYNP+ VP +    +  LNL+ALGIVS TV D P K+FIGGLPYHL EEQVKELL AFG L++ HLVK+  +  SKGY FCEY D  VT  AC GLN M LGDKTLTVR+      + A    A  +       LDP+       S      V    P+RV+VL+NMV  E+L+D++EY DIL+D++ EC+++G + ++++PRP +   + VGKVF+E+A+VQ AQAAA  L GR F+++ V  ++ DE ++A R+++
Sbjct:  148 RRKKSNFDVRPPGVTEKNAAAYAAQAILQQNMAALSGSVGASSFGPPQTSTPTGNAPPASLHTHSNPNPGYGFSSGLSQQTRHARRLYVGGIGEISEPEITAFFNDVIDRALGEKQEGGSVVSVYINRERHFAFVELRSIELTTACMNLDGVSYNGQPLKIRRPNDYNPATVPKDL-GPIPQLNLAALGIVSTTVSDGPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDINVTDAACIGLNDMQLGDKTLTVRRAMSQENAKAVASAAGTVNTGLEMGLDPSLAAMQAMSMAGIPSVPLGTPSRVIVLLNMVTPEELEDEEEYADILDDIKGECERFGAVPSLLLPRPRDGVLSAVGKVFVEFADVQSAQAAATELHGRGFSNRTVAVEFMDEGKYARREIS 569

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BLAST of jgi.p|Trimin1|173288 vs. uniprot
Match: D8LEZ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEZ9_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 1.310e-110
Identity = 205/447 (45.86%), Postives = 273/447 (61.07%), Query Frame = 1

Query:    7 RGSNFDVLPEGMDEATANQIAAQAFLQQTLPAAAAAAAVPLPMGGGAAPTMQQTRHARRLYVGNIPRVPEQEVQRFFNEVLTRALGGRQESDPVVSVYLNQDRGFAFVELRSVALTTAAIQLDGLMYGDISLKIRRPSDYNPSAVPSEFTNEVVHLNLSALGIVSNTVPDSPNKVFIGGLPYHLTEEQVKELLSAFGALKALHLVKDAGATNSKGYAFCEYQDPAVTSIACEGLNGMALGDKTLTVRKVR---------------------------------GHALSVAA-------LMLAQAMAALDPTAHKAV----------------TESAEAATVVRTMAPTRVLVLMNMVGEEDLKDDQEYTDILEDVRDECKQYGELKTVIIPRPGET----GVGKVFLEYAEVQQAQAAAMALAGRQFASKIVKAQYHDESRFAARDL 1167
            R SNFDV P+        + +AQ  L         +AA  L M      + QQTRHARRLY+G  P+  E+E+  FFNEV+ RAL    +   V SVY++Q++ FAF+EL+++ L T+ ++LDG++Y +  LK+RRPSDYNP  VP+  +  +  LNLS LGI+S+TVPDS NKVFIGGLPY+LTE+QV+ELLSAFG LK+ HLV+D G+  SKGY FCEY +  VT+IACEGL+GM LGDKTLTVR                                    G  + + A       + LAQAMAALDP A +A                  ESA AA ++R + PTRVLV++NMV E +L+D QEY DI++D++ EC  +G + ++I+PRPGE      VGKVF+EY     AQ AA++LAGRQF + IVK +Y +E +FA R+ 
Sbjct:  191 RPSNFDVKPDDPTAVALLEASAQQMLVSRGSGVMQSAAPQL-MARLPGASNQQTRHARRLYIGGCPKTTEEEMSSFFNEVINRALEYPIDGGAVASVYVSQEKAFAFLELKTMELATSVLELDGIVYKETQLKMRRPSDYNPQLVPAA-SGPIPKLNLSVLGIISSTVPDSDNKVFIGGLPYNLTEDQVRELLSAFGPLKSFHLVRDPGSPTSKGYGFCEYLNAGVTAIACEGLHGMTLGDKTLTVRPATDRGSSGXXXXXXXXXXXXXXXXXXXMPGMQMGGGQQMGLTAPPTQQEQMQLAQAMAALDPNASQAAMASLAQGGAGAVPSAAAESAVAANLIRAIPPTRVLVMLNMVTEAELRDPQEYEDIVDDIQQECSSHGTVLSIIVPRPGEADASRAVGKVFVEYDTKDSAQKAALSLAGRQFGANIVKVEYLNEEKFARREF 635

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BLAST of jgi.p|Trimin1|173288 vs. uniprot
Match: H3GIY2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GIY2_PHYRM)

HSP 1 Score: 347 bits (889), Expect = 8.360e-110
Identity = 202/426 (47.42%), Postives = 264/426 (61.97%), Query Frame = 1

Query:    1 KERGSNFDVLPEGMDEATANQIAAQAFLQQTL-------------------PAAAAAAAVPLPM---------GGGAAPTMQQTRHARRLYVGNIPRVPEQEVQRFFNEVLTRALGGRQESDPVVSVYLNQDRGFAFVELRSVALTTAAIQLDGLMYGDISLKIRRPSDYNPSAVPSEFTNEVVHLNLSALGIVSNTVPDSPNKVFIGGLPYHLTEEQVKELLSAFGALKALHLVKDAGATNSKGYAFCEYQDPAVTSIACEGLNGMALGDKTLTVRKVRGHALSVAALMLAQAM-----AALDPTAHKAVTESAEAATVVRTMAPTRVLVLMNMVGEEDLKDDQEYTDILEDVRDECKQYGELKTVIIPRPGE---TGVGKVFLEYAEVQQAQAAAMALAGRQFASKIVKAQYHDESRFAARDLA 1170
            + + SNFDV P G+ E  A   AAQA LQQ +                   P+ +   A P PM         G G     QQTRHARRLYVG I  + E E+  FFN+V+ RALG +QE   VVSVY+N++R FAFVELR++ LTTA + LDG+ Y    LKIRRP+DYNP+ VP +    +  LNL+ALGIVS TV D P K+FIGGLPYHL EEQVKELL AFG L++ HLVK+  +  SKGY FCEY D  VT  AC GLN M LGDKTLTVR+      + A    A  +       LDP+       S      V    P+RV+VL+NMV  E+L+D++EY DIL+D++ EC+++G + ++++PRP +   + VGKVF+E+ EVQ AQ+AA  L GR F+++ V  +Y DE ++A R+LA
Sbjct:  296 RRKKSNFDVRPPGVTEENAAAYAAQAILQQNMAALSGSVGPASFGPPQTSSPSMSTGNAPPAPMYNHSHQASTGYGFPGQSQQTRHARRLYVGGIGEIAEPEITAFFNDVIDRALGEKQEGGSVVSVYINRERHFAFVELRTIELTTACMNLDGVAYNGQPLKIRRPNDYNPATVPKDL-GPIPQLNLAALGIVSTTVSDGPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKEVSSNLSKGYGFCEYMDINVTDAACIGLNDMRLGDKTLTVRRAMSQENAKAVASAAGTVNTGLEMGLDPSRAAMQAMSLAGIPSVPLGTPSRVIVLLNMVTPEELEDEEEYADILDDIKGECERFGAVPSLLLPRPRDGIPSAVGKVFVEFGEVQSAQSAATELHGRGFSNRTVAVEYMDEGKYARRELA 720

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BLAST of jgi.p|Trimin1|173288 vs. uniprot
Match: K3WB93_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WB93_GLOUD)

HSP 1 Score: 339 bits (870), Expect = 2.490e-108
Identity = 203/417 (48.68%), Postives = 262/417 (62.83%), Query Frame = 1

Query:   13 SNFDVLPEGMDEATANQIAAQAFLQQTLPAAAAAAAVPLPMGGGAAP--------------------TMQQTRHARRLYVGNIPRVPEQEVQRFFNEVLTRALGGRQESDPVVSVYLNQDRGFAFVELRSVALTTAAIQLDGLMYGDISLKIRRPSDYNPSAVPSEFTNEVVHLNLSALGIVSNTVPDSPNKVFIGGLPYHLTEEQVKELLSAFGALKALHLVKDAGATNSKGYAFCEYQDPAVTSIACEGLNGMALGDKTLTVRKVRGH-----ALSVAALMLAQAMAALDPTAHKAVTESAEAATVVRTM---APTRVLVLMNMVGEEDLKDDQEYTDILEDVRDECKQYGELKTVIIPRPGE---TGVGKVFLEYAEVQQAQAAAMALAGRQFASKIVKAQYHDESRFAARDLA 1170
            S FDV P G+ E  A   AAQA LQQ + AA + A  P   G    P                      QQTRHARR+YVG I  V E E+  FFN+V+ RALG RQE   VVSVY+N++R FAFVELRS+ LTTA + LDG+ +    LKIRRP+DYNPS VP +    +  LNL+ALGIVS TV D P KVFIGGLPYHL +EQVKELL AFG LK+ HLVK+  +  SKGY FCEY D  VT  AC GLN M LGDKTLTVR+           S A  + +     L+P+ H A+     A   + +M    PTRV+VL+NMV  E+L+D++EY DI++D++ EC+++G + ++++PRP +   + VGKVF+EY +V  AQAAA  L GR F+++ V  +Y DE ++A RD +
Sbjct:  188 SYFDVRPPGVTEENAAAYAAQAILQQNM-AALSGAVGPASFGPPPPPIAPPAHAIVPGVVASHTFGGNSQQTRHARRIYVGGIGDVNEAEISEFFNDVIDRALGERQEGGAVVSVYINRERHFAFVELRSIELTTACMNLDGVSFRGQPLKIRRPNDYNPSTVPKDL-GPIPTLNLAALGIVSTTVSDGPGKVFIGGLPYHLNDEQVKELLQAFGPLKSFHLVKELNSNLSKGYGFCEYVDINVTDSACLGLNDMKLGDKTLTVRRAMSQENAKAVASAAGTVNSGLEMGLNPS-HAALQAMNLAGFGIPSMPLGTPTRVIVLLNMVTPEELEDEEEYADIVDDIKGECERFGRVNSIVLPRPRDGFYSAVGKVFVEYGDVPSAQAAAAELHGRGFSNRTVAVEYMDEHKYARRDFS 601

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|173288 vs. uniprot

BLAST of jgi.p|Trimin1|173288 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZGN1_9STRA	7.730e-269	100.00	Splicing factor U2AF subunit n=1 Tax=Tribonema min...	[more]
A0A8K1C271_PYTOL	2.130e-114	49.75	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
F0WWX4_9STRA	2.840e-113	49.88	Splicing factor U2AF subunit n=1 Tax=Albugo laibac...	[more]
A0A0W8DGC9_PHYNI	2.400e-112	48.21	Splicing factor U2AF subunit n=2 Tax=Peronosporace...	[more]
A0A225WYT2_9STRA	1.350e-111	47.52	Splicing factor U2AF subunit n=2 Tax=Phytophthora ...	[more]
W2PYB1_PHYPN	2.630e-111	47.75	Splicing factor U2AF subunit n=7 Tax=Phytophthora ...	[more]
D0MXQ4_PHYIT	1.140e-110	47.04	Splicing factor U2AF subunit n=3 Tax=Phytophthora ...	[more]
D8LEZ9_ECTSI	1.310e-110	45.86	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
H3GIY2_PHYRM	8.360e-110	47.42	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
K3WB93_GLOUD	2.490e-108	48.68	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_101	contig	Contig_101:138378..140982 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|173288\|e_gw1.101.19.1
BRITE	ko00000,ko00001,ko03041
KEGG Pathway	ko03040,map03040
KEGG ko	ko:K12837
Description	pre-mRNA 3'-splice site binding
COG category	J
Max annot lvl	2759\|Eukaryota
EggNOG OGs	KOG0120@1\|root,KOG0120@2759\|Eukaryota
Evalue	4.66e-114
Seed ortholog	653948.CCA25959
Hectar predicted targeting category	other localisation
TranscriptId	173610
Track	FilteredModels1
ProteinId	173288

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|173288	gene_10788	Tribonema minus UTEX_B_3156	gene	Contig_101 138378..140982 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_10788_1	exon_10788_1	Tribonema minus UTEX_B_3156	exon	Contig_101 138378..139154 +
exon_10788_2	exon_10788_2	Tribonema minus UTEX_B_3156	exon	Contig_101 139828..139998 +
exon_10788_3	exon_10788_3	Tribonema minus UTEX_B_3156	exon	Contig_101 140758..140982 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_10788	CDS_10788	Tribonema minus UTEX_B_3156	CDS	Contig_101 138378..139154 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|173288	Trimin1\|173288\|e_gw1.101.19.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_101 138378..140982 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_101:138378..140982+
coding sequence from alignment at Contig_101:138378..140982+

spliced messenger RNA

>mRNA_10788 ID=mRNA_10788|Name=jgi.p|Trimin1|173288|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1173bp|location=Sequence derived from alignment at Contig_101:138378..140982+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGGAGCGCGGCAGCAACTTCGACGTGCTCCCGGAGGGCATGGACGAGGC
CACGGCCAATCAGATCGCGGCGCAGGCGTTCCTGCAGCAGACGCTGCCCG
CGGCGGCGGCGGCGGCGGCGGTGCCGCTGCCGATGGGCGGCGGCGCGGCG
CCGACGATGCAGCAGACGCGCCACGCGCGCAGGCTGTACGTGGGGAACAT
TCCGCGCGTGCCGGAGCAGGAGGTGCAGCGCTTCTTCAACGAGGTGCTCA
CGCGCGCGCTGGGGGGGCGCCAGGAGAGCGACCCCGTGGTGTCGGTTTAC
CTCAACCAGGACAGGGGGTTCGCGTTCGTGGAGCTGCGCAGCGTCGCGCT
CACGACGGCGGCCATCCAGCTGGACGGCCTCATGTACGGCGACATCTCGC
TCAAGATACGGCGCCCGAGCGACTACAACCCGTCGGCGGTGCCGTCCGAG
TTCACGAACGAGGTCGTACACCTGAACCTCAGCGCGCTGGGCATCGTGTC
CAACACAGTCCCCGACAGCCCCAACAAGGTCTTCATCGGCGGCCTCCCGT
ACCACTTGACGGAGGAGCAGGTGAAGGAGCTGCTGAGCGCGTTTGGCGCT
CTCAAGGCGCTGCACCTGGTGAAGGACGCCGGCGCGACCAACTCCAAGGG
CTACGCGTTCTGCGAGTACCAGGACCCCGCGGTGACGTCCATTGCGTGCG
AGGGCCTCAACGGCATGGCGCTGGGGGACAAGACGCTCACCGTGCGCAAG
GTGAGGGGGCACGCGCTGAGCGTTGCTGCGCTCATGCTGGCACAGGCCAT
GGCAGCGCTCGACCCCACGGCGCACAAGGCGGTTACGGAGAGCGCAGAGG
CGGCGACGGTGGTGCGCACCATGGCGCCCACGCGCGTGCTGGTGCTCATG
AACATGGTCGGCGAGGAGGACCTCAAGGACGACCAGGAGTACACCGACAT
CCTGGAGGATGTGCGGGACGAGTGCAAGCAGTACGGAGAGCTCAAAACGG
TCATCATTCCGCGCCCGGGGGAGACGGGCGTGGGCAAGGTGTTCCTGGAG
TATGCAGAGGTGCAGCAGGCACAGGCCGCGGCGATGGCGCTTGCGGGCCG
CCAGTTCGCCTCCAAGATAGTCAAGGCGCAGTACCACGATGAGAGTCGGT
TTGCTGCGCGCGATCTGGCCTGA

protein sequence of jgi.p|Trimin1|173288

>Trimin1|173288|e_gw1.101.19.1 ID=Trimin1|173288|e_gw1.101.19.1|Name=jgi.p|Trimin1|173288|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=391bp
KERGSNFDVLPEGMDEATANQIAAQAFLQQTLPAAAAAAAVPLPMGGGAA
PTMQQTRHARRLYVGNIPRVPEQEVQRFFNEVLTRALGGRQESDPVVSVY
LNQDRGFAFVELRSVALTTAAIQLDGLMYGDISLKIRRPSDYNPSAVPSE
FTNEVVHLNLSALGIVSNTVPDSPNKVFIGGLPYHLTEEQVKELLSAFGA
LKALHLVKDAGATNSKGYAFCEYQDPAVTSIACEGLNGMALGDKTLTVRK
VRGHALSVAALMLAQAMAALDPTAHKAVTESAEAATVVRTMAPTRVLVLM
NMVGEEDLKDDQEYTDILEDVRDECKQYGELKTVIIPRPGETGVGKVFLE
YAEVQQAQAAAMALAGRQFASKIVKAQYHDESRFAARDLA*

mRNA from alignment at Contig_101:138378..140982+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10788 ID=mRNA_10788|Name=jgi.p|Trimin1|173288|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2605bp|location=Sequence derived from alignment at Contig_101:138378..140982+ (Tribonema minus UTEX_B_3156 )
AAGGAGCGCGGCAGCAACTTCGACGTGCTCCCGGAGGGCATGGACGAGGC
CACGGCCAATCAGATCGCGGCGCAGGCGTTCCTGCAGCAGACGCTGCCCG
CGGCGGCGGCGGCGGCGGCGGTGCCGCTGCCGATGGGCGGCGGCGCGGCG
CCGACGATGCAGCAGACGCGCCACGCGCGCAGGCTGTACGTGGGGAACAT
TCCGCGCGTGCCGGAGCAGGAGGTGCAGCGCTTCTTCAACGAGGTGCTCA
CGCGCGCGCTGGGGGGGCGCCAGGAGAGCGACCCCGTGGTGTCGGTTTAC
CTCAACCAGGACAGGGGGTTCGCGTTCGTGGAGCTGCGCAGCGTCGCGCT
CACGACGGCGGCCATCCAGCTGGACGGCCTCATGTACGGCGACATCTCGC
TCAAGATACGGCGCCCGAGCGACTACAACCCGTCGGCGGTGCCGTCCGAG
TTCACGAACGAGGTCGTACACCTGAACCTCAGCGCGCTGGGCATCGTGTC
CAACACAGTCCCCGACAGCCCCAACAAGGTCTTCATCGGCGGCCTCCCGT
ACCACTTGACGGAGGAGCAGGTGAAGGAGCTGCTGAGCGCGTTTGGCGCT
CTCAAGGCGCTGCACCTGGTGAAGGACGCCGGCGCGACCAACTCCAAGGG
CTACGCGTTCTGCGAGTACCAGGACCCCGCGGTGACGTCCATTGCGTGCG
AGGGCCTCAACGGCATGGCGCTGGGGGACAAGACGCTCACCGTGCGCAAG
GTGAGGGGGCACGCGCTGAGCGTTGCTGTAGGGGGGTTGAGGGGGTGGGT
GAAGGGTATTTTGAGGGTCCATTGAGGCTGTGGTTGCAGGGGGCAGTGCT
CAGCAGCCAGTGCTCAGCATGTGTGCGCATTGCTTGCATGTGTGCGCATT
GCTTGGGCTGCGCACTTGACGGCCGGACTCAGGTAAGGTCTTTGTGATGA
GGTAGGTATCTGGCGATGAGTAGTAGGCATCTGTGATGAGGAAAAGCGTC
TGTGATGAGGTGAAGTGTCTTTGACGAGGTCAGTCCTCGTTGCTGCTCAG
ATCTGAGCGCTGCTGCATGCAACAGTGATCAGTTGCTTTGAAGTCTCATA
AGTCACTGTATGTCAGCCAGTGACTGGCGTATATGGCACCAGGATCATAT
CAACATATGAGCACTCTGCTGAGAGAGATTCAGCTTTGCTCGTGCTTACT
TCTTCATTGATCCATACAATGTTCAACACCAAAGAGCAAAACTTCATGTG
TGACTATTGGACTGGTTTCTTCAAATTCACATAGTGAACGAAGAATTCAT
GATTACGAATGAACAACTGACACCCCCCCCTTGCCCCCCTCTTTGCAACA
GGCCAACGTCGCGGAGGCGCAGGGCGGCGCATTCCCCTACGCAATGGACG
CATCCGCGGTGCCCGCCGGCATCAGCGCCGCCGCGCCAAGCGCTGCCGAG
GCGCTCATGCTGGCACAGGCCATGGCAGCGCTCGACCCCACGGCGCACAA
GGCGGTTACGGAGAGCGCAGAGGCGGCGACGGTGGTGCGCACCATGGCGC
CCACGCGCGTGCTGGTGCTCATGAACATGGTCGGCGAGGAGGACCTCAAG
GACGACCAGGAGTACACCGACGTGAGTACAGTGTACAGCTGGGTGTACTC
TGCTGGTGTACTCACGTCGGTGTACTGCTGCTGCTGCTGTGAGGGTAGTT
GTGGCGCGTATCCCACAGTGTGTATGTGCACGGTGTGTGTGTGTGCTGCT
GCTGCGCTGATGTGATGTAGCTCTGCTATTAAGGTGCTTCCAGCGTGCAC
TTCAGATACTCTCTTCACTTCAACAATTGGTAGTGATGAATCCGCACATT
CTCCTGCCGTCGCCGGGGCGTTGAGCAATGTTTCTTAGCACAAACTTCAG
GTGTTGACACTCCAGTGGGACATATTATATGCTGCTGCAGTGTCTGTGAT
TTGGTCGGAGGGACCTTTCGTTCATGGACACAGCACAAGATCCGATCAAT
GCTCGCACATTGAATGCTGTGCTGTGCAAAGTGCGCTGCACTGCACATTA
GAGTGCCCATTGTCAGCCCTAGCGTCCATCCCATTTGCGCATGCGCATGG
ACAGTGACACCACTGTTACTGCACACATGATGGCGGTGATTTTGACAGCC
GTCATGCATCTACTGCATTACGATGTACAACAGTGTCCCTCTCAACCTAA
CCACAAGCCCTTGCCAACTGTAGGTGATTGTGCTTCACACACACTTCTCC
ATCCCCTGATGCTGCATTCGTGCATTTACATCTGCAGCCGCCTTTCGATT
GTGCAGCTTCGGTGCAGCACTGTCCTTCATCACGATTCAACTCAATCGCT
TGCCCCCCCCCCCCCCCCCCCAAATTACAGATCCTGGAGGATGTGCGGGA
CGAGTGCAAGCAGTACGGAGAGCTCAAAACGGTCATCATTCCGCGCCCGG
GGGAGACGGGCGTGGGCAAGGTGTTCCTGGAGTATGCAGAGGTGCAGCAG
GCACAGGCCGCGGCGATGGCGCTTGCGGGCCGCCAGTTCGCCTCCAAGAT
AGTCAAGGCGCAGTACCACGATGAGAGTCGGTTTGCTGCGCGCGATCTGG
CCTGA

Coding sequence (CDS) from alignment at Contig_101:138378..140982+

>mRNA_10788 ID=mRNA_10788|Name=jgi.p|Trimin1|173288|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1173bp|location=Sequence derived from alignment at Contig_101:138378..140982+ (Tribonema minus UTEX_B_3156 )
AAGGAGCGCGGCAGCAACTTCGACGTGCTCCCGGAGGGCATGGACGAGGC
CACGGCCAATCAGATCGCGGCGCAGGCGTTCCTGCAGCAGACGCTGCCCG
CGGCGGCGGCGGCGGCGGCGGTGCCGCTGCCGATGGGCGGCGGCGCGGCG
CCGACGATGCAGCAGACGCGCCACGCGCGCAGGCTGTACGTGGGGAACAT
TCCGCGCGTGCCGGAGCAGGAGGTGCAGCGCTTCTTCAACGAGGTGCTCA
CGCGCGCGCTGGGGGGGCGCCAGGAGAGCGACCCCGTGGTGTCGGTTTAC
CTCAACCAGGACAGGGGGTTCGCGTTCGTGGAGCTGCGCAGCGTCGCGCT
CACGACGGCGGCCATCCAGCTGGACGGCCTCATGTACGGCGACATCTCGC
TCAAGATACGGCGCCCGAGCGACTACAACCCGTCGGCGGTGCCGTCCGAG
TTCACGAACGAGGTCGTACACCTGAACCTCAGCGCGCTGGGCATCGTGTC
CAACACAGTCCCCGACAGCCCCAACAAGGTCTTCATCGGCGGCCTCCCGT
ACCACTTGACGGAGGAGCAGGTGAAGGAGCTGCTGAGCGCGTTTGGCGCT
CTCAAGGCGCTGCACCTGGTGAAGGACGCCGGCGCGACCAACTCCAAGGG
CTACGCGTTCTGCGAGTACCAGGACCCCGCGGTGACGTCCATTGCGTGCG
AGGGCCTCAACGGCATGGCGCTGGGGGACAAGACGCTCACCGTGCGCAAG
GTGAGGGGGCACGCGCTGAGCGTTGCTGCGCTCATGCTGGCACAGGCCAT
GGCAGCGCTCGACCCCACGGCGCACAAGGCGGTTACGGAGAGCGCAGAGG
CGGCGACGGTGGTGCGCACCATGGCGCCCACGCGCGTGCTGGTGCTCATG
AACATGGTCGGCGAGGAGGACCTCAAGGACGACCAGGAGTACACCGACAT
CCTGGAGGATGTGCGGGACGAGTGCAAGCAGTACGGAGAGCTCAAAACGG
TCATCATTCCGCGCCCGGGGGAGACGGGCGTGGGCAAGGTGTTCCTGGAG
TATGCAGAGGTGCAGCAGGCACAGGCCGCGGCGATGGCGCTTGCGGGCCG
CCAGTTCGCCTCCAAGATAGTCAAGGCGCAGTACCACGATGAGAGTCGGT
TTGCTGCGCGCGATCTGGCCTGA