mRNA_10739 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: A0A835ZDM5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDM5_9STRA) HSP 1 Score: 233 bits (593), Expect = 2.230e-77 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1
Query: 1 TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIALFVNVSVSATV 360
TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIALFVNVSVSATV
Sbjct: 1 TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIALFVNVSVSATV 120
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: A0A835ZJB6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJB6_9STRA) HSP 1 Score: 157 bits (396), Expect = 1.210e-45 Identity = 77/120 (64.17%), Postives = 94/120 (78.33%), Query Frame = 1
Query: 1 TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIALFVNVSVSATV 360
+PV FF+D F+ +LF AP+L ++ GDNMVRQSR L+RMTCE AGLLE+L +G+G GLE+VA NI +GLRAEHYEP+A L ALE CLGE AWT VA+SW+R IA+FVN SVS TV
Sbjct: 117 SPVTFFYDLFWARLFTVAPRLRALFGDNMVRQSRCLIRMTCEIAGLLEALAAGRGTAGLEAVAHANIEIGLRAEHYEPLAAVLRHALEFCLGEPAWTPLVAESWMRAIAVFVNASVSVTV 236
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: A0A835ZFA8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFA8_9STRA) HSP 1 Score: 127 bits (319), Expect = 3.090e-34 Identity = 62/123 (50.41%), Postives = 85/123 (69.11%), Query Frame = 1
Query: 1 TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGE---QAWTAPVAQSWLRVIALFVNVSVSATV 360
+PV FF+DTFY++LF AP + S+ GDNMVRQSR LVRM CECAG+ E+ + KGL G ++VA+ N +G+R+EHY PIA+ L +L C GE WTA ++++W IALF+ S T+
Sbjct: 90 SPVTFFYDTFYSRLFTLAPSMRSVFGDNMVRQSRCLVRMICECAGMHEAFAANKGLSGAQTVAQANAELGIRSEHYAPIASALKYSLAYCFGEGGMYGWTAALSEAWTGAIALFIAACTSTTI 212
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: A0A835ZD45_9STRA (GLOBIN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD45_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.870e-20 Identity = 52/121 (42.98%), Postives = 71/121 (58.68%), Query Frame = 1
Query: 1 TPVAFFFDTFYTKLFFAAPKLASIL--GDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIALFVNVSVSAT 357
+P +F +D FY +L+ AAPKL S G +M RQSR L+ + E AGL +L G GL VA + +GLR HY +A LL AL C G QAWT VA +W + +A+FV +++ T
Sbjct: 1060 SPASFLYDAFYAELYAAAPKLRSRAFGGGSMFRQSRALMPLLGELAGLAAALAGGSSAAGLARVAAAHSELGLRPHHYGAVAGALLSALPRCFGAQAWTPAVAAAWRQAVAVFVTIAIGVT 1180
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: A0A835Z9V8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9V8_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 5.620e-19 Identity = 51/121 (42.15%), Postives = 69/121 (57.02%), Query Frame = 1
Query: 1 TPVAFFFDTFYTKLFFAAPKLASIL--GDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIALFVNVSVSAT 357
+P +F +D FY +L+ AAPKL S G +M RQSR L+ + E AGL +L G GL VA + +GL HY +A LL AL C G QAWT A +W +A+F+NV++ T
Sbjct: 1514 SPASFLYDAFYAELYVAAPKLRSRAFGGGSMFRQSRALMPLLGELAGLAAALAGGSSAAGLAHVAAAHSELGLGPHHYGAVAGALLLALPRCFGAQAWTPAGADAWRHAVAVFMNVAIGVT 1634
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: A0A6A4ZSW8_9STRA (GLOBIN domain-containing protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZSW8_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 8.150e-8 Identity = 30/109 (27.52%), Postives = 60/109 (55.05%), Query Frame = 1
Query: 1 TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIA 327
+PV +F+D+FYTKLF AP++ S+ +++ Q + L+ + +++ + +GG+ +A + G++ ++Y + LL L C G + WT+ + +W V A
Sbjct: 99 SPVVYFYDSFYTKLFEVAPEVRSLFRTSIIVQGKALINII---QSIIKGPITTDAVGGVVDLAYRHNKYGVKMQYYNILGRVLLLTLGECTGSEFWTSDLELAWRTVYA 204
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: A0A485LMH2_9STRA (Aste57867_22737 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LMH2_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 1.010e-7 Identity = 33/113 (29.20%), Postives = 62/113 (54.87%), Query Frame = 1
Query: 1 TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESLTSGK----GLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIA 327
+PV +F+D+FYTKLF AAP++ S+ +++ Q + L+ +++S+ G +G + +A + G++ ++Y + LL AL C G++ W A + +W V A
Sbjct: 87 SPVIYFYDSFYTKLFEAAPEIRSLFRASIIVQGKALI-------SIIQSVVKGPLTADAIGEVVELAYRHNKYGIKMQYYNILGRVLLLALGECTGDELWDATLDLAWRTVYA 192
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: W4FN33_9STRA (GLOBIN domain-containing protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FN33_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.700e-7 Identity = 29/109 (26.61%), Postives = 56/109 (51.38%), Query Frame = 1
Query: 1 TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIA 327
+PV +F+D+FYT+LF AP++ S+ +++ Q + L+ + A + S + + +A + G++ ++Y + LL+ L C G + WT + W V A
Sbjct: 72 SPVVYFYDSFYTRLFEVAPEVRSLFRSSIIVQGKALINIVQSIAN---GVNSADAIANVVELAYRHNQYGVKMQYYNVLGRVLLEVLRDCTGHELWTNELDVGWRTVYA 177
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: UPI001564671D (globin domain-containing protein n=1 Tax=Aquabacterium terrae TaxID=2732868 RepID=UPI001564671D) HSP 1 Score: 49.3 bits (116), Expect = 6.590e-5 Identity = 33/104 (31.73%), Postives = 54/104 (51.92%), Query Frame = 1
Query: 28 FYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLL---ESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIAL 330
FY +LF P L + ++ +Q + L++M GLL E+L L+S+ + G G+R EHY+ +AT L+ L LG +T + +W R+IA+
Sbjct: 27 FYRRLFEIDPALRGLFHGDLQQQGQRLLQMLGAAVGLLARPETLFPV-----LQSLGNRHAGYGVRPEHYDAVATALIDTLAEVLGS-GFTTELRDAWSRLIAI 124
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: A0A545SSC1_9RHOB (Uncharacterized protein n=1 Tax=Aliiroseovarius halocynthiae TaxID=985055 RepID=A0A545SSC1_9RHOB) HSP 1 Score: 48.9 bits (115), Expect = 9.210e-5 Identity = 36/102 (35.29%), Postives = 52/102 (50.98%), Query Frame = 1
Query: 16 FFDTFYTKLFFAAPKLASILGDNM---VRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSW 312
F F+ LF AP+L + GDN+ +Q + L RM AG +LT+G L G R G+R++H E +A TL+ L+ LG +W A A +W
Sbjct: 23 FAQAFFPLLFSRAPELKVLFGDNIDDPAQQVQVLYRMMMAFAGNDVTLTAGMRLIGFRMAMR-----GMRSDHAELLANTLIGTLKRQLGN-SWQADFAYAW 118 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10739 ID=mRNA_10739|Name=jgi.p|Trimin1|151974|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=360bp|location=Sequence derived from alignment at Contig_110:377242..377601- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ACCCCCGTGGCCTTCTTCTTCGACACGTTCTACACCAAGCTGTTCTTCGCback to top protein sequence of jgi.p|Trimin1|151974 >Trimin1|151974|gw1.110.88.1 ID=Trimin1|151974|gw1.110.88.1|Name=jgi.p|Trimin1|151974|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=120bp TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESLback to top mRNA from alignment at Contig_110:377242..377601- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10739 ID=mRNA_10739|Name=jgi.p|Trimin1|151974|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=360bp|location=Sequence derived from alignment at Contig_110:377242..377601- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_110:377242..377601- >mRNA_10739 ID=mRNA_10739|Name=jgi.p|Trimin1|151974|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=360bp|location=Sequence derived from alignment at Contig_110:377242..377601- (Tribonema minus UTEX_B_3156 )back to top |