mRNA_10739 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151974
Unique NamemRNA_10739
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: A0A835ZDM5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDM5_9STRA)

HSP 1 Score: 233 bits (593), Expect = 2.230e-77
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1
Query:    1 TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIALFVNVSVSATV 360
            TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIALFVNVSVSATV
Sbjct:    1 TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIALFVNVSVSATV 120          
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: A0A835ZJB6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJB6_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.210e-45
Identity = 77/120 (64.17%), Postives = 94/120 (78.33%), Query Frame = 1
Query:    1 TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIALFVNVSVSATV 360
            +PV FF+D F+ +LF  AP+L ++ GDNMVRQSR L+RMTCE AGLLE+L +G+G  GLE+VA  NI +GLRAEHYEP+A  L  ALE CLGE AWT  VA+SW+R IA+FVN SVS TV
Sbjct:  117 SPVTFFYDLFWARLFTVAPRLRALFGDNMVRQSRCLIRMTCEIAGLLEALAAGRGTAGLEAVAHANIEIGLRAEHYEPLAAVLRHALEFCLGEPAWTPLVAESWMRAIAVFVNASVSVTV 236          
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: A0A835ZFA8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFA8_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.090e-34
Identity = 62/123 (50.41%), Postives = 85/123 (69.11%), Query Frame = 1
Query:    1 TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGE---QAWTAPVAQSWLRVIALFVNVSVSATV 360
            +PV FF+DTFY++LF  AP + S+ GDNMVRQSR LVRM CECAG+ E+  + KGL G ++VA+ N  +G+R+EHY PIA+ L  +L  C GE     WTA ++++W   IALF+    S T+
Sbjct:   90 SPVTFFYDTFYSRLFTLAPSMRSVFGDNMVRQSRCLVRMICECAGMHEAFAANKGLSGAQTVAQANAELGIRSEHYAPIASALKYSLAYCFGEGGMYGWTAALSEAWTGAIALFIAACTSTTI 212          
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: A0A835ZD45_9STRA (GLOBIN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD45_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.870e-20
Identity = 52/121 (42.98%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    1 TPVAFFFDTFYTKLFFAAPKLASIL--GDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIALFVNVSVSAT 357
            +P +F +D FY +L+ AAPKL S    G +M RQSR L+ +  E AGL  +L  G    GL  VA  +  +GLR  HY  +A  LL AL  C G QAWT  VA +W + +A+FV +++  T
Sbjct: 1060 SPASFLYDAFYAELYAAAPKLRSRAFGGGSMFRQSRALMPLLGELAGLAAALAGGSSAAGLARVAAAHSELGLRPHHYGAVAGALLSALPRCFGAQAWTPAVAAAWRQAVAVFVTIAIGVT 1180          
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: A0A835Z9V8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9V8_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 5.620e-19
Identity = 51/121 (42.15%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    1 TPVAFFFDTFYTKLFFAAPKLASIL--GDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIALFVNVSVSAT 357
            +P +F +D FY +L+ AAPKL S    G +M RQSR L+ +  E AGL  +L  G    GL  VA  +  +GL   HY  +A  LL AL  C G QAWT   A +W   +A+F+NV++  T
Sbjct: 1514 SPASFLYDAFYAELYVAAPKLRSRAFGGGSMFRQSRALMPLLGELAGLAAALAGGSSAAGLAHVAAAHSELGLGPHHYGAVAGALLLALPRCFGAQAWTPAGADAWRHAVAVFMNVAIGVT 1634          
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: A0A6A4ZSW8_9STRA (GLOBIN domain-containing protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZSW8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 8.150e-8
Identity = 30/109 (27.52%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    1 TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIA 327
            +PV +F+D+FYTKLF  AP++ S+   +++ Q + L+ +      +++   +   +GG+  +A  +   G++ ++Y  +   LL  L  C G + WT+ +  +W  V A
Sbjct:   99 SPVVYFYDSFYTKLFEVAPEVRSLFRTSIIVQGKALINII---QSIIKGPITTDAVGGVVDLAYRHNKYGVKMQYYNILGRVLLLTLGECTGSEFWTSDLELAWRTVYA 204          
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: A0A485LMH2_9STRA (Aste57867_22737 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LMH2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.010e-7
Identity = 33/113 (29.20%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    1 TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESLTSGK----GLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIA 327
            +PV +F+D+FYTKLF AAP++ S+   +++ Q + L+        +++S+  G      +G +  +A  +   G++ ++Y  +   LL AL  C G++ W A +  +W  V A
Sbjct:   87 SPVIYFYDSFYTKLFEAAPEIRSLFRASIIVQGKALI-------SIIQSVVKGPLTADAIGEVVELAYRHNKYGIKMQYYNILGRVLLLALGECTGDELWDATLDLAWRTVYA 192          
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: W4FN33_9STRA (GLOBIN domain-containing protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FN33_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.700e-7
Identity = 29/109 (26.61%), Postives = 56/109 (51.38%), Query Frame = 1
Query:    1 TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIA 327
            +PV +F+D+FYT+LF  AP++ S+   +++ Q + L+ +    A     + S   +  +  +A  +   G++ ++Y  +   LL+ L  C G + WT  +   W  V A
Sbjct:   72 SPVVYFYDSFYTRLFEVAPEVRSLFRSSIIVQGKALINIVQSIAN---GVNSADAIANVVELAYRHNQYGVKMQYYNVLGRVLLEVLRDCTGHELWTNELDVGWRTVYA 177          
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: UPI001564671D (globin domain-containing protein n=1 Tax=Aquabacterium terrae TaxID=2732868 RepID=UPI001564671D)

HSP 1 Score: 49.3 bits (116), Expect = 6.590e-5
Identity = 33/104 (31.73%), Postives = 54/104 (51.92%), Query Frame = 1
Query:   28 FYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLL---ESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSWLRVIAL 330
            FY +LF   P L  +   ++ +Q + L++M     GLL   E+L        L+S+   + G G+R EHY+ +AT L+  L   LG   +T  +  +W R+IA+
Sbjct:   27 FYRRLFEIDPALRGLFHGDLQQQGQRLLQMLGAAVGLLARPETLFPV-----LQSLGNRHAGYGVRPEHYDAVATALIDTLAEVLGS-GFTTELRDAWSRLIAI 124          
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Match: A0A545SSC1_9RHOB (Uncharacterized protein n=1 Tax=Aliiroseovarius halocynthiae TaxID=985055 RepID=A0A545SSC1_9RHOB)

HSP 1 Score: 48.9 bits (115), Expect = 9.210e-5
Identity = 36/102 (35.29%), Postives = 52/102 (50.98%), Query Frame = 1
Query:   16 FFDTFYTKLFFAAPKLASILGDNM---VRQSRTLVRMTCECAGLLESLTSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPVAQSW 312
            F   F+  LF  AP+L  + GDN+    +Q + L RM    AG   +LT+G  L G     R     G+R++H E +A TL+  L+  LG  +W A  A +W
Sbjct:   23 FAQAFFPLLFSRAPELKVLFGDNIDDPAQQVQVLYRMMMAFAGNDVTLTAGMRLIGFRMAMR-----GMRSDHAELLANTLIGTLKRQLGN-SWQADFAYAW 118          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151974 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A835ZDM5_9STRA2.230e-77100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZJB6_9STRA1.210e-4564.17Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZFA8_9STRA3.090e-3450.41Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZD45_9STRA1.870e-2042.98GLOBIN domain-containing protein n=1 Tax=Tribonema... [more]
A0A835Z9V8_9STRA5.620e-1942.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6A4ZSW8_9STRA8.150e-827.52GLOBIN domain-containing protein (Fragment) n=1 Ta... [more]
A0A485LMH2_9STRA1.010e-729.20Aste57867_22737 protein n=1 Tax=Aphanomyces stella... [more]
W4FN33_9STRA1.700e-726.61GLOBIN domain-containing protein n=9 Tax=Aphanomyc... [more]
UPI001564671D6.590e-531.73globin domain-containing protein n=1 Tax=Aquabacte... [more]
A0A545SSC1_9RHOB9.210e-535.29Uncharacterized protein n=1 Tax=Aliiroseovarius ha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_110contigContig_110:377242..377601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151974|gw1.110.88.1
Max annot lvl2759|Eukaryota
EggNOG OGs2CZMZ@1|root,2SAZ9@2759|Eukaryota,3QF64@4776|Peronosporales
Evalue2.5e-09
Seed ortholog67593.Physo136549
Hectar predicted targeting categoryother localisation
TranscriptId152296
TrackFilteredModels1
ProteinId151974
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151974gene_10739Tribonema minus UTEX_B_3156 geneContig_110 377242..377601 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10739_1exon_10739_1Tribonema minus UTEX_B_3156 exonContig_110 377242..377601 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10739CDS_10739Tribonema minus UTEX_B_3156 CDSContig_110 377242..377601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151974Trimin1|151974|gw1.110.88.1Tribonema minus UTEX_B_3156 polypeptideContig_110 377242..377601 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10739 ID=mRNA_10739|Name=jgi.p|Trimin1|151974|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=360bp|location=Sequence derived from alignment at Contig_110:377242..377601- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACCCCCGTGGCCTTCTTCTTCGACACGTTCTACACCAAGCTGTTCTTCGC
CGCGCCAAAGCTCGCAAGCATTCTGGGCGACAACATGGTGCGGCAGAGCC
GCACCCTGGTGCGCATGACGTGCGAGTGCGCGGGCCTCCTGGAGTCCCTG
ACCAGCGGCAAGGGGCTGGGGGGTCTGGAATCCGTGGCGCGCGACAACAT
CGGCGTGGGCCTGCGCGCCGAGCACTACGAGCCGATCGCCACGACGCTGC
TGCAGGCCCTGGAGACGTGTCTTGGGGAGCAGGCGTGGACGGCGCCGGTG
GCGCAGTCCTGGCTACGAGTCATCGCGCTGTTCGTCAACGTCAGCGTCAG
CGCCACCGTC
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protein sequence of jgi.p|Trimin1|151974

>Trimin1|151974|gw1.110.88.1 ID=Trimin1|151974|gw1.110.88.1|Name=jgi.p|Trimin1|151974|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=120bp
TPVAFFFDTFYTKLFFAAPKLASILGDNMVRQSRTLVRMTCECAGLLESL
TSGKGLGGLESVARDNIGVGLRAEHYEPIATTLLQALETCLGEQAWTAPV
AQSWLRVIALFVNVSVSATV
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mRNA from alignment at Contig_110:377242..377601-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10739 ID=mRNA_10739|Name=jgi.p|Trimin1|151974|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=360bp|location=Sequence derived from alignment at Contig_110:377242..377601- (Tribonema minus UTEX_B_3156 )
ACCCCCGTGGCCTTCTTCTTCGACACGTTCTACACCAAGCTGTTCTTCGC CGCGCCAAAGCTCGCAAGCATTCTGGGCGACAACATGGTGCGGCAGAGCC GCACCCTGGTGCGCATGACGTGCGAGTGCGCGGGCCTCCTGGAGTCCCTG ACCAGCGGCAAGGGGCTGGGGGGTCTGGAATCCGTGGCGCGCGACAACAT CGGCGTGGGCCTGCGCGCCGAGCACTACGAGCCGATCGCCACGACGCTGC TGCAGGCCCTGGAGACGTGTCTTGGGGAGCAGGCGTGGACGGCGCCGGTG GCGCAGTCCTGGCTACGAGTCATCGCGCTGTTCGTCAACGTCAGCGTCAG CGCCACCGTC
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Coding sequence (CDS) from alignment at Contig_110:377242..377601-

>mRNA_10739 ID=mRNA_10739|Name=jgi.p|Trimin1|151974|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=360bp|location=Sequence derived from alignment at Contig_110:377242..377601- (Tribonema minus UTEX_B_3156 )
ACCCCCGTGGCCTTCTTCTTCGACACGTTCTACACCAAGCTGTTCTTCGC
CGCGCCAAAGCTCGCAAGCATTCTGGGCGACAACATGGTGCGGCAGAGCC
GCACCCTGGTGCGCATGACGTGCGAGTGCGCGGGCCTCCTGGAGTCCCTG
ACCAGCGGCAAGGGGCTGGGGGGTCTGGAATCCGTGGCGCGCGACAACAT
CGGCGTGGGCCTGCGCGCCGAGCACTACGAGCCGATCGCCACGACGCTGC
TGCAGGCCCTGGAGACGTGTCTTGGGGAGCAGGCGTGGACGGCGCCGGTG
GCGCAGTCCTGGCTACGAGTCATCGCGCTGTTCGTCAACGTCAGCGTCAG
CGCCACCGTC
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