mRNA_10735 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|174060 vs. uniprot
Match: A0A835ZCF0_9STRA (Ribonuclease H-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCF0_9STRA) HSP 1 Score: 390 bits (1001), Expect = 1.120e-135 Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 1
Query: 1 MQVPVPPAHPARCRCRRRRRYVVVSRSGAFTGLEPCIGGARFFREGTAKPRVPPAALAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPLRPPPRWQATWADVPAAAAALARARRCADTPLTLVETPRGVAALAAELTRAREFAFDVESHSYRSYHGLTCLLQVSTDAGGDFIVDPLAPGMWEAMTQLRAVFADPDVLKVGHAISGCDVPSLHRDFGIVMAGGTCL 717
MQVPVPPAHPARCRCRRRRRYVVVSRSGAFTGLEPCIGGARFFREGTAKPRVPPAALAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPLRPPPRWQATWADVPAAAAALARARRCADTPLTLVETPRGVAALAAELTRAREFAFDVESHSYRSYHGLTCLLQVSTDAGGDFIVDPLAPGMWEAMTQLRAVFADPDVLKVGHAISGCDVPSLHRDFGIVMAGGTCL
Sbjct: 1 MQVPVPPAHPARCRCRRRRRYVVVSRSGAFTGLEPCIGGARFFREGTAKPRVPPAALAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPLRPPPRWQATWADVPAAAAALARARRCADTPLTLVETPRGVAALAAELTRAREFAFDVESHSYRSYHGLTCLLQVSTDAGGDFIVDPLAPGMWEAMTQLRAVFADPDVLKVGHAISGCDVPSLHRDFGIVMAGGTCL 239
BLAST of jgi.p|Trimin1|174060 vs. uniprot
Match: D7FS53_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS53_ECTSI) HSP 1 Score: 117 bits (294), Expect = 5.820e-29 Identity = 56/107 (52.34%), Postives = 75/107 (70.09%), Query Frame = 1
Query: 391 DTPLTLVETPRGVAALAAELTRAREFAFDVESHSYRSYHGLTCLLQVSTDAGGDFIVDPLAPGMWEAMTQLRAVFADPDVLKVGHAISGCDVPSLHRDFGIVMAGGT 711
D V+TP ++ALA +L RE++FDVE+H+ R+Y+GL CLLQ+ST+ D++VDPLA GMW+ M LR F +PDVLK+GH+I DVPSL RDFG V+
Sbjct: 61 DVEYEYVDTPAKLSALAEDLNACREWSFDVEAHNARTYYGLACLLQISTE-WKDYVVDPLAEGMWDNMGLLRDAFGNPDVLKIGHSIRSLDVPSLFRDFGFVIVNAV 166
BLAST of jgi.p|Trimin1|174060 vs. uniprot
Match: A0A7S1ZMT7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZMT7_TRICV) HSP 1 Score: 114 bits (284), Expect = 1.470e-28 Identity = 53/97 (54.64%), Postives = 71/97 (73.20%), Query Frame = 1
Query: 409 VETPRGVAALAAELTRAREFAFDVESHSYRSYHGLTCLLQVSTDAGGDFIVDPLAPGMWEAMTQLRAVFADPDVLKVGHAISGCDVPSLHRDFGIVM 699
V+T + AE+T A E AFD+E H+ + +TCLLQ+STD G D++VD L+PG+W+A++ L VFADP V+KVGH+I G DVPSLHRDFGI +
Sbjct: 1 VDTEEKMRRCVAEMTEASEVAFDLEMHNESLHTQITCLLQLSTDLGTDYVVDVLSPGVWDAVSLLAPVFADPKVVKVGHSIGGMDVPSLHRDFGIFV 97
BLAST of jgi.p|Trimin1|174060 vs. uniprot
Match: A0A6H5JK06_9PHAE (R3H domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK06_9PHAE) HSP 1 Score: 122 bits (306), Expect = 2.160e-28 Identity = 79/221 (35.75%), Postives = 110/221 (49.77%), Query Frame = 1
Query: 58 RYVVVSRSGAFTGLEPCIGGARFFREGTAKPRVPPAALAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPLRPPPRWQATWA---DVPAAAAALARARRCADTPLTLVETPRGVAALAAELTRAREFAFDVESHSYRSYHGLTCLLQVSTDAGGDFIVDPLAPGMWEAMTQLRAVFADPDVLKVGHAISGCDVPSLHRDFGIVMAGGT 711
R+V++SR+G F G GG+++++ G A P V A+ P VPP P + A +V A A + V+TP ++ALA +L RE++FDVE+H+ R+YHGL CLLQ+ST+ D++VDPLA GMW+ M LR F +PDVLK+GH+I DVPSL RDFG V+
Sbjct: 219 RHVIISRTGVFQGKILTRGGSKWYKPGVAAPVVKRFAMQPGHEAIAEPFLVALRSFHASVQLHEPGFEQWLRAN------VPPTSLPNAYGYAAAPEFEVEKAQTAFLEWPLLHEVEYEYVDTPAKLSALAEDLNACREWSFDVEAHNARTYHGLVCLLQISTE-WKDYVVDPLAEGMWDNMGLLRDAFGNPDVLKIGHSIRSLDVPSLFRDFGFVIVNAV 432
BLAST of jgi.p|Trimin1|174060 vs. uniprot
Match: A0A7S2ETS6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ETS6_9STRA) HSP 1 Score: 109 bits (273), Expect = 5.290e-27 Identity = 50/103 (48.54%), Postives = 71/103 (68.93%), Query Frame = 1
Query: 397 PLTLVETPRGVAALAAELTRAR--EFAFDVESHSYRSYHGLTCLLQVSTDAGGDFIVDPLAPGMWEAMTQLRAVFADPDVLKVGHAISGCDVPSLHRDFGIVM 699
P LV+T + A E+ + E AFD+E H+ Y +TCLLQ+ TD G D+++D LAPG+W+A++ L +FADP+++K+GH I G DVPSLHRDFGI +
Sbjct: 13 PWMLVDTREKMEACVKEIVDSHPSELAFDLEMHNVSKYMQITCLLQLCTDQGKDYVIDVLAPGVWDAVSLLSPIFADPNIVKIGHCIGGMDVPSLHRDFGIFV 115
BLAST of jgi.p|Trimin1|174060 vs. uniprot
Match: A0A7S4RSV8_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RSV8_9STRA) HSP 1 Score: 109 bits (273), Expect = 8.340e-24 Identity = 50/103 (48.54%), Postives = 71/103 (68.93%), Query Frame = 1
Query: 397 PLTLVETPRGVAALAAELTRAR--EFAFDVESHSYRSYHGLTCLLQVSTDAGGDFIVDPLAPGMWEAMTQLRAVFADPDVLKVGHAISGCDVPSLHRDFGIVM 699
P LV+T + A E+ + E AFD+E H+ Y +TCLLQ+ TD G D+++D LAPG+W+A++ L +FADP+++K+GH I G DVPSLHRDFGI +
Sbjct: 149 PWMLVDTREKMEACVKEIVDSHPSELAFDLEMHNVSKYMQITCLLQLCTDQGKDYVIDVLAPGVWDAVSLLSPIFADPNIVKIGHCIGGMDVPSLHRDFGIFV 251
BLAST of jgi.p|Trimin1|174060 vs. uniprot
Match: A0A7S3XKC3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKC3_HETAK) HSP 1 Score: 104 bits (260), Expect = 9.520e-23 Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 1
Query: 400 LTLVETPRGVAALAAELTRAREFAFDVESHSYRSYHGLTCLLQVSTDAGGDFIVDPLAPGMWEAM-TQLRAVFADPDVLKVGHAISGCDVPSLHRDFGI 693
L +VETP + LAA L F FD+E H+YRSYHGLTCLLQV+T A G ++VDPLAPG+WE + L FADP KV H G D P+L RDFG+
Sbjct: 9 LRMVETPEALDELAAHLDTVDVFGFDLEFHNYRSYHGLTCLLQVAT-ARGVWVVDPLAPGVWERVGPALGPAFADPQKAKVAHDARGGDAPALLRDFGV 106
BLAST of jgi.p|Trimin1|174060 vs. uniprot
Match: A0A7S2H9Z6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H9Z6_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.060e-22 Identity = 49/103 (47.57%), Postives = 70/103 (67.96%), Query Frame = 1
Query: 397 PLTLVETPRGVAALAAELTRAR--EFAFDVESHSYRSYHGLTCLLQVSTDAGGDFIVDPLAPGMWEAMTQLRAVFADPDVLKVGHAISGCDVPSLHRDFGIVM 699
P LV+T + A E+T + E FD+E H+ Y +TCLLQ+ TD G D+++D LAPG+W+A++ L +FADP+++K+GH I G DV SLHRDFGI +
Sbjct: 265 PWMLVDTAEKMEQCAEEITDSHPSEIGFDLEMHNQSKYMQVTCLLQLCTDEGKDYVIDVLAPGVWDAVSLLAPIFADPNIVKIGHCIGGMDVSSLHRDFGIFV 367
BLAST of jgi.p|Trimin1|174060 vs. uniprot
Match: A0A7S4JXJ1_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JXJ1_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.340e-22 Identity = 48/100 (48.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query: 406 LVETPRGVAALAAELTRAR--EFAFDVESHSYRSYHGLTCLLQVSTDAGGDFIVDPLAPGMWEAMTQLRAVFADPDVLKVGHAISGCDVPSLHRDFGIVM 699
L+ + A E+ A+ E AFD+E ++ Y+ TCL+Q+STDAG D+++D LAPG+WE +T L +FA+P ++KVGHAI G DVP+LHRDFG+ +
Sbjct: 141 LINNGEKMTACVKEIEEAQPSEIAFDMEMYNQSMYNQFTCLIQLSTDAGKDYVIDVLAPGVWEKVTLLAPLFANPSIVKVGHAIGGMDVPALHRDFGVFV 240
BLAST of jgi.p|Trimin1|174060 vs. uniprot
Match: UPI00103B4DCE (exosome component 10 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103B4DCE) HSP 1 Score: 100 bits (250), Expect = 7.890e-21 Identity = 56/105 (53.33%), Postives = 66/105 (62.86%), Query Frame = 1
Query: 391 DTPLTLVETPRGVAALAAELTRAREFAFDVESHSYRSYHGLTCLLQVSTDAGGDFIVDPLAPGMWEAMTQLRAVFADPDVLKVGHAISGCDVPSLHRDFGIVMAG 705
DT LTLVET + L A L RE A D+E HSYRSY G+TCL+Q+STD GGDFIVD LA E + +L +F DP LKV H DV L RDFG+ + G
Sbjct: 228 DTRLTLVETAEQLDRLVAHLGSVRELAVDLEHHSYRSYQGITCLIQISTDEGGDFIVDALAAR--EHVHKLNVIFTDPTKLKVFHGAES-DVLWLQRDFGVYVVG 329 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174060 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10735 ID=mRNA_10735|Name=jgi.p|Trimin1|174060|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=720bp|location=Sequence derived from alignment at Contig_110:324946..326076+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCAAGTACCAGTGCCACCTGCGCACCCTGCACGCTGCCGCTGCCGCCGback to top protein sequence of jgi.p|Trimin1|174060 >Trimin1|174060|e_gw1.110.60.1 ID=Trimin1|174060|e_gw1.110.60.1|Name=jgi.p|Trimin1|174060|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=240bp MQVPVPPAHPARCRCRRRRRYVVVSRSGAFTGLEPCIGGARFFREGTAKPback to top mRNA from alignment at Contig_110:324946..326076+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10735 ID=mRNA_10735|Name=jgi.p|Trimin1|174060|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1131bp|location=Sequence derived from alignment at Contig_110:324946..326076+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_110:324946..326076+ >mRNA_10735 ID=mRNA_10735|Name=jgi.p|Trimin1|174060|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=720bp|location=Sequence derived from alignment at Contig_110:324946..326076+ (Tribonema minus UTEX_B_3156 )back to top |