mRNA_107 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: A0A835YWY0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY0_9STRA) HSP 1 Score: 580 bits (1496), Expect = 1.090e-209 Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 1 Query: 1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHPLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATRSRKGGNTIIVRRQG 846 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHPLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATRSRKGGNTIIVRRQG Sbjct: 1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHPLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATRSRKGGNTIIVRRQG 282
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: A0A835Z4P3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4P3_9STRA) HSP 1 Score: 403 bits (1036), Expect = 1.630e-139 Identity = 189/286 (66.08%), Postives = 236/286 (82.52%), Query Frame = 1 Query: 1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHPLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQ------DSRPMSEATRSRKGGNTIIVRR 840 M FN KFD E++RSPACVAI GKRG+GKS+LIKD+LYHL++A VPRC+CFSATE+AN +F F+P VFVH L+ DTL +W+AQKEL +QK VGQL P TDTRL +++DDCA+ K +MKSA L+EIFMNGRHHG++FIVTLQYLIDLNV+MRSNVD +F+LKEL+ KNQERIY+ESCGFLP F FQDLFMAST+NYEAFVVN RCKS+D Q+I+ +Y+AD LNF++G ++WR+H VYESA+D+Y R+QR QQ DSRP ++ R +GG+TI+VRR Sbjct: 1 MAFNLTKFDMSEVSRSPACVAICGKRGSGKSVLIKDILYHLHVARVPRCVCFSATEDANQFFSGFVPDVFVHALNHDTLSNMWQAQKELAMQKAVGQLPPGTDTRLAIILDDCAFDKTVMKSAVLKEIFMNGRHHGVFFIVTLQYLIDLNVSMRSNVDVFFFLKELNLKNQERIYHESCGFLPCFGAFQDLFMASTSNYEAFVVNGRCKSSDAQQIIHYYKADPTLNFRFGPASIWRFHSTVYESATDRYVRMQREQQEPRAVVDSRPSNKGRRGARGGSTIVVRR 286
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: A0A836CRE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRE2_9STRA) HSP 1 Score: 303 bits (776), Expect = 2.120e-100 Identity = 149/282 (52.84%), Postives = 192/282 (68.09%), Query Frame = 1 Query: 1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHPLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQR----LQRTQQDSRPMSEATRSRKGGNTIIV 834 M+FNF++FDP+E+++ P C+AIVG RGTGKS+L+KD+LYH+N AG PRC+ FS TE ANSYF F+P VFVHP+D DTL VW+ QKELVL+K G L T+T LVLV+DDCA++++ YLIDLNVAMRSNVD +F+LKEL+ N+E+IY E+CGFLP++ F+ LF +TA+YE FVVNSRC S++P+ IV HY+ADA L ++YG P LWRYH VYES +YQR L+R + SR GG T V Sbjct: 1 MSFNFSRFDPREISKRPVCIAIVGMRGTGKSVLLKDILYHINEAGAPRCVVFSGTEGANSYFSEFVPGVFVHPMDQDTLHSVWERQKELVLKKAAGGLPASTNTSLVLVLDDCAFNRK--------------------------YLIDLNVAMRSNVDIYFFLKELNRMNREKIYKETCGFLPNYHVFEQLFNDATADYETFVVNSRCTSSNPEDIVHHYKADAGLQYRYGPPCLWRYHHSVYESPQQRYQRQQEALRRDGGGKKSSGTGGLSRAGGKTETV 256
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: A0A835Z4N1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N1_9STRA) HSP 1 Score: 245 bits (626), Expect = 2.560e-77 Identity = 117/273 (42.86%), Postives = 180/273 (65.93%), Query Frame = 1 Query: 19 KFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATRSRKGGNTIIV 834 KFDP ++ + + KRG+GKS L KD+LY L+ G PRC FS TE AN +F F+P VFVH PLD +TL +W QKE++L++R G L+ + DTR+++V+DDC++ K+ S +RE+ NGRH+ + I+TLQYL+DL AMRSNVD F+ ++ N+ER+Y + GF P + TF+ +F A TANYE V++ S D IV++Y+A+A ++FK+G P+LW++HD+++ S D+Y + R + + S+ + ++ GN+ I Sbjct: 12 KFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEGFPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNTLTHIWNTQKEIILKQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEACTANYECMCVDNTVSSTDHTDIVSYYKAEA-VDFKFGPPSLWKFHDKLFISEEDEY--ILRQKMTLQSASKNSMTKVSGNSSIT 281
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: A0A836CN20_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN20_9STRA) HSP 1 Score: 237 bits (604), Expect = 5.730e-74 Identity = 115/274 (41.97%), Postives = 173/274 (63.14%), Query Frame = 1 Query: 19 KFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATRSRKGGNTIIVR 837 +FD + R + + GKRGTGKS L KD++YHL+ AG PRC FS TE AN +F TF+P VF+H P D + L + K QK+L++++++GQ+ D DTRL++V+DDCAY K+++ S +REI MNGRH+ I +VTLQYL+D ++R+NVD +LK+ N+ERI+ CG + F+ +F + TAN+E V++ S D + IV++Y+A + FK+G +LWR+HD+VY S D++ Q+ T+ G +VR Sbjct: 15 RFDISMLARKNFTMTLTGKRGTGKSYLTKDIMYHLHKAGFPRCCVFSQTESANGFFSTFVPGVFIHSPFDLNVLANILKQQKDLIMKQKLGQIPADQDTRLLIVLDDCAYDKKILSSPIIREIMMNGRHYFISLVVTLQYLVDFAPSLRANVDVALFLKDNIKGNRERIWKHFCGMFSDYKVFEAVFESCTANFECLCVDNTISSTDNEDIVSYYKAGEH-EFKFGNRSLWRFHDKVYLSEEDEFVMRQQMAVQQAVQQSVTKVTSSGLITVVR 287
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: A0A835Z5I5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I5_9STRA) HSP 1 Score: 232 bits (592), Expect = 3.490e-72 Identity = 111/274 (40.51%), Postives = 177/274 (64.60%), Query Frame = 1 Query: 19 KFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATRSRKGGNTIIVR 837 +FD ++T+ + + GKRG+GKS L KD+++HL+ A PRC FS TE AN +F F+P +F+H P D + L + K QK+L++++++GQ+ D DTRL+LV+DDCAY ++++ S +REI MNGRH+ I IVTLQYL+DL ++R+NVD +LK+ N+ER++ GF +F F+ +F + TAN+E F V++ S + IV++Y+A ++ +F++G P+LW++HD VY S D++ Q+ T+ G +VR Sbjct: 13 RFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKA-SDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAVQQAVQQSVTKVTSSGVITVVR 285
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: C7U0C4_9PHYC (Uncharacterized protein n=9 Tax=root TaxID=1 RepID=C7U0C4_9PHYC) HSP 1 Score: 181 bits (458), Expect = 2.560e-52 Identity = 93/244 (38.11%), Postives = 141/244 (57.79%), Query Frame = 1 Query: 1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVY 729 M KF P+ M+ CV +GKR TGKS L+KD++YH +P I S TEE N ++G F+P +FV+ D D ++RV Q+++V K N +++DDC Y + +K +R+ FMNGRH+ I+F++T+QY++DL A+R+NVD F L+E +N+E++Y G PSF F + A T NYE V+++ KSN V Y+A F+ G+P LW+ H ++Y Sbjct: 1 MNLQLRKFKPEAMSDDRVCV-FIGKRNTGKSTLVKDIMYHKK--HIPAGIVLSGTEEGNHFYGEFIPDLFVYGEYDRDAIERVISRQRKIVGTKGKNPYNG-----AFMLLDDCMYDSKFLKDTCIRQCFMNGRHYNIFFMLTMQYVMDLPPALRANVDYVFILRENIIQNREKLYKSFFGIFPSFDMFSKVMDACTENYECLVLDNTVKSNKITDCVFWYKATVRKGFRVGSPNLWQLHKKMY 236
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: A0A0P0YND4_9PHYC (Putative VV A32 virion packaging ATPase n=1 Tax=Yellowstone lake phycodnavirus 2 TaxID=1586714 RepID=A0A0P0YND4_9PHYC) HSP 1 Score: 179 bits (454), Expect = 1.050e-51 Identity = 96/281 (34.16%), Postives = 152/281 (54.09%), Query Frame = 1 Query: 1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATRSRKGGNTIIVRR 840 M+ +FDP +M CV +GKRGTGKS L+ D+L+H +P I S TE+ N ++ F+P +FV+ + D ++++ + Q+++ + L P + ++MDDC Y + M+ +R +FMNGRH I+F++T QY++D+ +RSN D F L++ +N+E +Y G P+F F + A T NYE V+++ CK+N Q +V Y+A NFK G P+ W+YH Y Q P RSR G TI+V++ Sbjct: 1 MSVQLKRFDPTKMRNDRVCV-FIGKRGTGKSTLVTDILWHKR--AIPAGIAMSGTEDGNGHYKQFIPDLFVYGDYNKDAIEKIMERQRKIAARVGKEALPP-----VFILMDDCMYDRAFMRDTVMRSLFMNGRHWNIFFMMTTQYVMDMTPMIRSNTDYVFVLRDNVKQNRENLYKCFFGMFPNFDVFCQVMDACTENYECLVLDTTCKTNKIQDMVFWYKAPIRKNFKVGGPSFWQYHQRHYNPRH----------QTGPPPGTIARSR-GAPTIVVKK 262
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: Q6XM75_9PHYC (FirrV-1-A12 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM75_9PHYC) HSP 1 Score: 179 bits (455), Expect = 2.170e-51 Identity = 90/257 (35.02%), Postives = 146/257 (56.81%), Query Frame = 1 Query: 4 TFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHP--LDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRT 768 T + F+ K ++GK+ TGKS LIKD+LY+++ VPR FS TEE+N ++ F+P +F+ + + L ++ ++QK++ +QK++G+ D D+R+V+V+DD Y K +K LR+IFMNGRHH I IV QY +DL + +R+N D F LK+ + + + ++ G FQ + A TA+Y+ V+++ S + + Y+A +K+G P LW YH Y S +YQ Q+T Sbjct: 5 TIKLSAFNAKAACSKHFNAVVIGKKHTGKSTLIKDILYNVHKQKVPRICVFSGTEESNGFYREFIPDLFIFDDSMVEEKLTQIVESQKKIGMQKQLGECGDDVDSRIVVVLDDVGYKKNTLKCEILRQIFMNGRHHQISLIVACQYCMDLAIDLRTNADYVFVLKQNNMNSIKNLHETYFGSFEKKKDFQTVLEACTADYQCLVLDNTKPSTNTTDVCFWYKAKYGKEYKFGCPLLWEYHGRWYMSEKQRYQSQQKT 261
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: A0A2N9QVV5_9PHYC (Uncharacterized protein n=1 Tax=Dishui lake phycodnavirus 1 TaxID=2079134 RepID=A0A2N9QVV5_9PHYC) HSP 1 Score: 178 bits (451), Expect = 2.630e-51 Identity = 92/244 (37.70%), Postives = 139/244 (56.97%), Query Frame = 1 Query: 1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVY 729 M +F+PK M CV VGKR TGKS L+KD++YH +P + S TEE NS+FG F+P +FV+ D + L+RV QK ++ + + +V+DDC Y+ +K +R+ FMNGRH ++F +TLQY +DL ++R+N D F L+E N+ER++ G +PSF F + A+T NYE V+++ KSN + +Y+AD NF+ G+P W H ++Y Sbjct: 3 MNLQLKRFNPKTMPDDAVCV-FVGKRRTGKSQLLKDMMYHKR--HIPAGVVLSGTEEGNSFFGAFVPDLFVYGDYDKEALERVVARQKAMIAKNKCQPA--------FVVLDDCMYNPSFLKDKIIRQCFMNGRHWKLWFALTLQYSMDLPPSLRANCDYVFVLRENVLSNRERLWKNFFGIVPSFDMFCKILDATTENYECLVLDNTSKSNKLTDCIFYYKADLRKNFRVGSPKFWNIHKKMY 235 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_107 ID=mRNA_107|Name=jgi.p|Trimin1|157617|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=849bp|location=Sequence derived from alignment at Contig_3:505284..506132+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGACTTTCAACTTCGCCAAGTTTGACCCTAAGGAGATGACGCGGTCGCCback to top protein sequence of jgi.p|Trimin1|157617 >Trimin1|157617|e_gw1.3.502.1 ID=Trimin1|157617|e_gw1.3.502.1|Name=jgi.p|Trimin1|157617|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=283bp MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCIback to top mRNA from alignment at Contig_3:505284..506132+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_107 ID=mRNA_107|Name=jgi.p|Trimin1|157617|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=849bp|location=Sequence derived from alignment at Contig_3:505284..506132+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_3:505284..506132+ >mRNA_107 ID=mRNA_107|Name=jgi.p|Trimin1|157617|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=849bp|location=Sequence derived from alignment at Contig_3:505284..506132+ (Tribonema minus UTEX_B_3156 )back to top |