mRNA_107 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157617
Unique NamemRNA_107
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: A0A835YWY0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY0_9STRA)

HSP 1 Score: 580 bits (1496), Expect = 1.090e-209
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 1
Query:    1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHPLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATRSRKGGNTIIVRRQG 846
            MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHPLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATRSRKGGNTIIVRRQG
Sbjct:    1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHPLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATRSRKGGNTIIVRRQG 282          
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: A0A835Z4P3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4P3_9STRA)

HSP 1 Score: 403 bits (1036), Expect = 1.630e-139
Identity = 189/286 (66.08%), Postives = 236/286 (82.52%), Query Frame = 1
Query:    1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHPLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQ------DSRPMSEATRSRKGGNTIIVRR 840
            M FN  KFD  E++RSPACVAI GKRG+GKS+LIKD+LYHL++A VPRC+CFSATE+AN +F  F+P VFVH L+ DTL  +W+AQKEL +QK VGQL P TDTRL +++DDCA+ K +MKSA L+EIFMNGRHHG++FIVTLQYLIDLNV+MRSNVD +F+LKEL+ KNQERIY+ESCGFLP F  FQDLFMAST+NYEAFVVN RCKS+D Q+I+ +Y+AD  LNF++G  ++WR+H  VYESA+D+Y R+QR QQ      DSRP ++  R  +GG+TI+VRR
Sbjct:    1 MAFNLTKFDMSEVSRSPACVAICGKRGSGKSVLIKDILYHLHVARVPRCVCFSATEDANQFFSGFVPDVFVHALNHDTLSNMWQAQKELAMQKAVGQLPPGTDTRLAIILDDCAFDKTVMKSAVLKEIFMNGRHHGVFFIVTLQYLIDLNVSMRSNVDVFFFLKELNLKNQERIYHESCGFLPCFGAFQDLFMASTSNYEAFVVNGRCKSSDAQQIIHYYKADPTLNFRFGPASIWRFHSTVYESATDRYVRMQREQQEPRAVVDSRPSNKGRRGARGGSTIVVRR 286          
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: A0A836CRE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRE2_9STRA)

HSP 1 Score: 303 bits (776), Expect = 2.120e-100
Identity = 149/282 (52.84%), Postives = 192/282 (68.09%), Query Frame = 1
Query:    1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHPLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQR----LQRTQQDSRPMSEATRSRKGGNTIIV 834
            M+FNF++FDP+E+++ P C+AIVG RGTGKS+L+KD+LYH+N AG PRC+ FS TE ANSYF  F+P VFVHP+D DTL  VW+ QKELVL+K  G L   T+T LVLV+DDCA++++                          YLIDLNVAMRSNVD +F+LKEL+  N+E+IY E+CGFLP++  F+ LF  +TA+YE FVVNSRC S++P+ IV HY+ADA L ++YG P LWRYH  VYES   +YQR    L+R     +       SR GG T  V
Sbjct:    1 MSFNFSRFDPREISKRPVCIAIVGMRGTGKSVLLKDILYHINEAGAPRCVVFSGTEGANSYFSEFVPGVFVHPMDQDTLHSVWERQKELVLKKAAGGLPASTNTSLVLVLDDCAFNRK--------------------------YLIDLNVAMRSNVDIYFFLKELNRMNREKIYKETCGFLPNYHVFEQLFNDATADYETFVVNSRCTSSNPEDIVHHYKADAGLQYRYGPPCLWRYHHSVYESPQQRYQRQQEALRRDGGGKKSSGTGGLSRAGGKTETV 256          
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: A0A835Z4N1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N1_9STRA)

HSP 1 Score: 245 bits (626), Expect = 2.560e-77
Identity = 117/273 (42.86%), Postives = 180/273 (65.93%), Query Frame = 1
Query:   19 KFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATRSRKGGNTIIV 834
            KFDP ++ +      +  KRG+GKS L KD+LY L+  G PRC  FS TE AN +F  F+P VFVH PLD +TL  +W  QKE++L++R G L+ + DTR+++V+DDC++ K+   S  +RE+  NGRH+ +  I+TLQYL+DL  AMRSNVD  F+ ++    N+ER+Y +  GF P + TF+ +F A TANYE   V++   S D   IV++Y+A+A ++FK+G P+LW++HD+++ S  D+Y  + R +   +  S+ + ++  GN+ I 
Sbjct:   12 KFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEGFPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNTLTHIWNTQKEIILKQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEACTANYECMCVDNTVSSTDHTDIVSYYKAEA-VDFKFGPPSLWKFHDKLFISEEDEY--ILRQKMTLQSASKNSMTKVSGNSSIT 281          
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: A0A836CN20_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN20_9STRA)

HSP 1 Score: 237 bits (604), Expect = 5.730e-74
Identity = 115/274 (41.97%), Postives = 173/274 (63.14%), Query Frame = 1
Query:   19 KFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATRSRKGGNTIIVR 837
            +FD   + R    + + GKRGTGKS L KD++YHL+ AG PRC  FS TE AN +F TF+P VF+H P D + L  + K QK+L++++++GQ+  D DTRL++V+DDCAY K+++ S  +REI MNGRH+ I  +VTLQYL+D   ++R+NVD   +LK+    N+ERI+   CG    +  F+ +F + TAN+E   V++   S D + IV++Y+A  +  FK+G  +LWR+HD+VY S  D++   Q+           T+    G   +VR
Sbjct:   15 RFDISMLARKNFTMTLTGKRGTGKSYLTKDIMYHLHKAGFPRCCVFSQTESANGFFSTFVPGVFIHSPFDLNVLANILKQQKDLIMKQKLGQIPADQDTRLLIVLDDCAYDKKILSSPIIREIMMNGRHYFISLVVTLQYLVDFAPSLRANVDVALFLKDNIKGNRERIWKHFCGMFSDYKVFEAVFESCTANFECLCVDNTISSTDNEDIVSYYKAGEH-EFKFGNRSLWRFHDKVYLSEEDEFVMRQQMAVQQAVQQSVTKVTSSGLITVVR 287          
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: A0A835Z5I5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I5_9STRA)

HSP 1 Score: 232 bits (592), Expect = 3.490e-72
Identity = 111/274 (40.51%), Postives = 177/274 (64.60%), Query Frame = 1
Query:   19 KFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATRSRKGGNTIIVR 837
            +FD  ++T+    + + GKRG+GKS L KD+++HL+ A  PRC  FS TE AN +F  F+P +F+H P D + L  + K QK+L++++++GQ+  D DTRL+LV+DDCAY ++++ S  +REI MNGRH+ I  IVTLQYL+DL  ++R+NVD   +LK+    N+ER++    GF  +F  F+ +F + TAN+E F V++   S   + IV++Y+A ++ +F++G P+LW++HD VY S  D++   Q+           T+    G   +VR
Sbjct:   13 RFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKA-SDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAVQQAVQQSVTKVTSSGVITVVR 285          
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: C7U0C4_9PHYC (Uncharacterized protein n=9 Tax=root TaxID=1 RepID=C7U0C4_9PHYC)

HSP 1 Score: 181 bits (458), Expect = 2.560e-52
Identity = 93/244 (38.11%), Postives = 141/244 (57.79%), Query Frame = 1
Query:    1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVY 729
            M     KF P+ M+    CV  +GKR TGKS L+KD++YH     +P  I  S TEE N ++G F+P +FV+   D D ++RV   Q+++V  K     N        +++DDC Y  + +K   +R+ FMNGRH+ I+F++T+QY++DL  A+R+NVD  F L+E   +N+E++Y    G  PSF  F  +  A T NYE  V+++  KSN     V  Y+A     F+ G+P LW+ H ++Y
Sbjct:    1 MNLQLRKFKPEAMSDDRVCV-FIGKRNTGKSTLVKDIMYHKK--HIPAGIVLSGTEEGNHFYGEFIPDLFVYGEYDRDAIERVISRQRKIVGTKGKNPYNG-----AFMLLDDCMYDSKFLKDTCIRQCFMNGRHYNIFFMLTMQYVMDLPPALRANVDYVFILRENIIQNREKLYKSFFGIFPSFDMFSKVMDACTENYECLVLDNTVKSNKITDCVFWYKATVRKGFRVGSPNLWQLHKKMY 236          
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: A0A0P0YND4_9PHYC (Putative VV A32 virion packaging ATPase n=1 Tax=Yellowstone lake phycodnavirus 2 TaxID=1586714 RepID=A0A0P0YND4_9PHYC)

HSP 1 Score: 179 bits (454), Expect = 1.050e-51
Identity = 96/281 (34.16%), Postives = 152/281 (54.09%), Query Frame = 1
Query:    1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATRSRKGGNTIIVRR 840
            M+    +FDP +M     CV  +GKRGTGKS L+ D+L+H     +P  I  S TE+ N ++  F+P +FV+   + D ++++ + Q+++  +     L P     + ++MDDC Y +  M+   +R +FMNGRH  I+F++T QY++D+   +RSN D  F L++   +N+E +Y    G  P+F  F  +  A T NYE  V+++ CK+N  Q +V  Y+A    NFK G P+ W+YH   Y              Q   P     RSR G  TI+V++
Sbjct:    1 MSVQLKRFDPTKMRNDRVCV-FIGKRGTGKSTLVTDILWHKR--AIPAGIAMSGTEDGNGHYKQFIPDLFVYGDYNKDAIEKIMERQRKIAARVGKEALPP-----VFILMDDCMYDRAFMRDTVMRSLFMNGRHWNIFFMMTTQYVMDMTPMIRSNTDYVFVLRDNVKQNRENLYKCFFGMFPNFDVFCQVMDACTENYECLVLDTTCKTNKIQDMVFWYKAPIRKNFKVGGPSFWQYHQRHYNPRH----------QTGPPPGTIARSR-GAPTIVVKK 262          
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: Q6XM75_9PHYC (FirrV-1-A12 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM75_9PHYC)

HSP 1 Score: 179 bits (455), Expect = 2.170e-51
Identity = 90/257 (35.02%), Postives = 146/257 (56.81%), Query Frame = 1
Query:    4 TFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVHP--LDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRT 768
            T   + F+ K          ++GK+ TGKS LIKD+LY+++   VPR   FS TEE+N ++  F+P +F+    +  + L ++ ++QK++ +QK++G+   D D+R+V+V+DD  Y K  +K   LR+IFMNGRHH I  IV  QY +DL + +R+N D  F LK+ +  + + ++    G       FQ +  A TA+Y+  V+++   S +   +   Y+A     +K+G P LW YH   Y S   +YQ  Q+T
Sbjct:    5 TIKLSAFNAKAACSKHFNAVVIGKKHTGKSTLIKDILYNVHKQKVPRICVFSGTEESNGFYREFIPDLFIFDDSMVEEKLTQIVESQKKIGMQKQLGECGDDVDSRIVVVLDDVGYKKNTLKCEILRQIFMNGRHHQISLIVACQYCMDLAIDLRTNADYVFVLKQNNMNSIKNLHETYFGSFEKKKDFQTVLEACTADYQCLVLDNTKPSTNTTDVCFWYKAKYGKEYKFGCPLLWEYHGRWYMSEKQRYQSQQKT 261          
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Match: A0A2N9QVV5_9PHYC (Uncharacterized protein n=1 Tax=Dishui lake phycodnavirus 1 TaxID=2079134 RepID=A0A2N9QVV5_9PHYC)

HSP 1 Score: 178 bits (451), Expect = 2.630e-51
Identity = 92/244 (37.70%), Postives = 139/244 (56.97%), Query Frame = 1
Query:    1 MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVY 729
            M     +F+PK M     CV  VGKR TGKS L+KD++YH     +P  +  S TEE NS+FG F+P +FV+   D + L+RV   QK ++ + +             +V+DDC Y+   +K   +R+ FMNGRH  ++F +TLQY +DL  ++R+N D  F L+E    N+ER++    G +PSF  F  +  A+T NYE  V+++  KSN     + +Y+AD   NF+ G+P  W  H ++Y
Sbjct:    3 MNLQLKRFNPKTMPDDAVCV-FVGKRRTGKSQLLKDMMYHKR--HIPAGVVLSGTEEGNSFFGAFVPDLFVYGDYDKEALERVVARQKAMIAKNKCQPA--------FVVLDDCMYNPSFLKDKIIRQCFMNGRHWKLWFALTLQYSMDLPPSLRANCDYVFVLRENVLSNRERLWKNFFGIVPSFDMFCKILDATTENYECLVLDNTSKSNKLTDCIFYYKADLRKNFRVGSPKFWNIHKKMY 235          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157617 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YWY0_9STRA1.090e-209100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z4P3_9STRA1.630e-13966.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CRE2_9STRA2.120e-10052.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z4N1_9STRA2.560e-7742.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CN20_9STRA5.730e-7441.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z5I5_9STRA3.490e-7240.51Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
C7U0C4_9PHYC2.560e-5238.11Uncharacterized protein n=9 Tax=root TaxID=1 RepID... [more]
A0A0P0YND4_9PHYC1.050e-5134.16Putative VV A32 virion packaging ATPase n=1 Tax=Ye... [more]
Q6XM75_9PHYC2.170e-5135.02FirrV-1-A12 n=1 Tax=Feldmannia irregularis virus a... [more]
A0A2N9QVV5_9PHYC2.630e-5137.70Uncharacterized protein n=1 Tax=Dishui lake phycod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:505284..506132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157617|e_gw1.3.502.1
Max annot lvl2759|Eukaryota
EggNOG OGs2E819@1|root,2SEJ0@2759|Eukaryota
Evalue2.24e-50
Seed ortholog2880.D8LP63
Hectar predicted targeting categoryother localisation
TranscriptId157939
TrackFilteredModels1
ProteinId157617
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157617gene_107Tribonema minus UTEX_B_3156 geneContig_3 505284..506132 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_107_1exon_107_1Tribonema minus UTEX_B_3156 exonContig_3 505284..506132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_107CDS_107Tribonema minus UTEX_B_3156 CDSContig_3 505284..506132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157617Trimin1|157617|e_gw1.3.502.1Tribonema minus UTEX_B_3156 polypeptideContig_3 505284..506132 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_107 ID=mRNA_107|Name=jgi.p|Trimin1|157617|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=849bp|location=Sequence derived from alignment at Contig_3:505284..506132+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTCAACTTCGCCAAGTTTGACCCTAAGGAGATGACGCGGTCGCC
TGCATGCGTCGCGATCGTCGGGAAAAGGGGCACTGGTAAGTCTATGCTGA
TCAAAGACCTGCTGTACCATCTCAACCTCGCCGGCGTTCCGCGGTGCATC
TGTTTCTCCGCCACCGAGGAGGCAAACTCGTACTTTGGCACTTTTCTGCC
AAGCGTTTTTGTGCACCCATTGGACCCCGACACCTTGGACAGAGTGTGGA
AGGCTCAGAAGGAGCTGGTGTTACAGAAAAGAGTGGGTCAGCTCAACCCG
GACACAGACACGCGTCTCGTGCTCGTCATGGACGACTGCGCATACCACAA
ACAAATGATGAAGTCGGCAACTCTGCGTGAGATATTCATGAACGGCCGTC
ACCACGGCATCTACTTCATAGTCACGTTGCAGTACCTCATCGACCTCAAC
GTCGCAATGCGAAGTAACGTCGACTGCTGGTTCTATCTCAAGGAGCTCTC
CCACAAGAACCAGGAGAGGATCTACAATGAATCGTGTGGATTTCTGCCGT
CTTTCTTGACCTTCCAAGACCTCTTCATGGCCAGCACAGCGAACTACGAG
GCGTTCGTGGTCAACTCGAGGTGCAAAAGCAACGACCCACAGAAGATCGT
CGCCCACTATCGAGCTGATGCAAACTTAAATTTCAAGTACGGCGCTCCTG
CTCTTTGGAGGTACCATGACGAGGTCTATGAAAGCGCCAGCGACAAGTAC
CAGCGCTTGCAGAGGACGCAGCAGGACAGCAGACCCATGTCGGAAGCGAC
GAGGAGCAGGAAAGGCGGAAACACGATCATCGTGCGTAGACAGGGGTGA
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protein sequence of jgi.p|Trimin1|157617

>Trimin1|157617|e_gw1.3.502.1 ID=Trimin1|157617|e_gw1.3.502.1|Name=jgi.p|Trimin1|157617|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=283bp
MTFNFAKFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCI
CFSATEEANSYFGTFLPSVFVHPLDPDTLDRVWKAQKELVLQKRVGQLNP
DTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLN
VAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYE
AFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKY
QRLQRTQQDSRPMSEATRSRKGGNTIIVRRQG*
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mRNA from alignment at Contig_3:505284..506132+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_107 ID=mRNA_107|Name=jgi.p|Trimin1|157617|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=849bp|location=Sequence derived from alignment at Contig_3:505284..506132+ (Tribonema minus UTEX_B_3156 )
ATGACTTTCAACTTCGCCAAGTTTGACCCTAAGGAGATGACGCGGTCGCC TGCATGCGTCGCGATCGTCGGGAAAAGGGGCACTGGTAAGTCTATGCTGA TCAAAGACCTGCTGTACCATCTCAACCTCGCCGGCGTTCCGCGGTGCATC TGTTTCTCCGCCACCGAGGAGGCAAACTCGTACTTTGGCACTTTTCTGCC AAGCGTTTTTGTGCACCCATTGGACCCCGACACCTTGGACAGAGTGTGGA AGGCTCAGAAGGAGCTGGTGTTACAGAAAAGAGTGGGTCAGCTCAACCCG GACACAGACACGCGTCTCGTGCTCGTCATGGACGACTGCGCATACCACAA ACAAATGATGAAGTCGGCAACTCTGCGTGAGATATTCATGAACGGCCGTC ACCACGGCATCTACTTCATAGTCACGTTGCAGTACCTCATCGACCTCAAC GTCGCAATGCGAAGTAACGTCGACTGCTGGTTCTATCTCAAGGAGCTCTC CCACAAGAACCAGGAGAGGATCTACAATGAATCGTGTGGATTTCTGCCGT CTTTCTTGACCTTCCAAGACCTCTTCATGGCCAGCACAGCGAACTACGAG GCGTTCGTGGTCAACTCGAGGTGCAAAAGCAACGACCCACAGAAGATCGT CGCCCACTATCGAGCTGATGCAAACTTAAATTTCAAGTACGGCGCTCCTG CTCTTTGGAGGTACCATGACGAGGTCTATGAAAGCGCCAGCGACAAGTAC CAGCGCTTGCAGAGGACGCAGCAGGACAGCAGACCCATGTCGGAAGCGAC GAGGAGCAGGAAAGGCGGAAACACGATCATCGTGCGTAGACAGGGGTGA
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Coding sequence (CDS) from alignment at Contig_3:505284..506132+

>mRNA_107 ID=mRNA_107|Name=jgi.p|Trimin1|157617|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=849bp|location=Sequence derived from alignment at Contig_3:505284..506132+ (Tribonema minus UTEX_B_3156 )
ATGACTTTCAACTTCGCCAAGTTTGACCCTAAGGAGATGACGCGGTCGCC
TGCATGCGTCGCGATCGTCGGGAAAAGGGGCACTGGTAAGTCTATGCTGA
TCAAAGACCTGCTGTACCATCTCAACCTCGCCGGCGTTCCGCGGTGCATC
TGTTTCTCCGCCACCGAGGAGGCAAACTCGTACTTTGGCACTTTTCTGCC
AAGCGTTTTTGTGCACCCATTGGACCCCGACACCTTGGACAGAGTGTGGA
AGGCTCAGAAGGAGCTGGTGTTACAGAAAAGAGTGGGTCAGCTCAACCCG
GACACAGACACGCGTCTCGTGCTCGTCATGGACGACTGCGCATACCACAA
ACAAATGATGAAGTCGGCAACTCTGCGTGAGATATTCATGAACGGCCGTC
ACCACGGCATCTACTTCATAGTCACGTTGCAGTACCTCATCGACCTCAAC
GTCGCAATGCGAAGTAACGTCGACTGCTGGTTCTATCTCAAGGAGCTCTC
CCACAAGAACCAGGAGAGGATCTACAATGAATCGTGTGGATTTCTGCCGT
CTTTCTTGACCTTCCAAGACCTCTTCATGGCCAGCACAGCGAACTACGAG
GCGTTCGTGGTCAACTCGAGGTGCAAAAGCAACGACCCACAGAAGATCGT
CGCCCACTATCGAGCTGATGCAAACTTAAATTTCAAGTACGGCGCTCCTG
CTCTTTGGAGGTACCATGACGAGGTCTATGAAAGCGCCAGCGACAAGTAC
CAGCGCTTGCAGAGGACGCAGCAGGACAGCAGACCCATGTCGGAAGCGAC
GAGGAGCAGGAAAGGCGGAAACACGATCATCGTGCGTAGACAGGGGTGA
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