mRNA_10586 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: A0A836C8K7_9STRA (Alpha/Beta hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K7_9STRA) HSP 1 Score: 262 bits (669), Expect = 8.230e-89 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1
Query: 1 YSFLDIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAGA 375
YSFLDIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAGA
Sbjct: 1 YSFLDIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAGA 125
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: D8LGM8_ECTSI (Lipase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM8_ECTSI) HSP 1 Score: 158 bits (400), Expect = 6.220e-45 Identity = 71/124 (57.26%), Postives = 88/124 (70.97%), Query Frame = 1
Query: 4 SFLDIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAGA 375
+FLD+PY+ +KHRLDVY+ FPR + R +F HGGSW RG RR P YGN+GRA A+ G+VG+V+SYRLAP V+HPEQV DVARA+ W N +RYGG DD+VL+GHSAGA
Sbjct: 58 AFLDVPYYEGDDACEEKHRLDVYIPSAPFPRPRSRTCLFVHGGSWQRGDRRHPAVPDQFYGNVGRAFAAKGLVGLVMSYRLAPEVQHPEQVRDVARAIRWARDNASRYGGDGDDLVLVGHSAGA 181
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: A0A6H5LKK9_9PHAE (Abhydrolase_3 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKK9_9PHAE) HSP 1 Score: 157 bits (398), Expect = 4.020e-44 Identity = 71/123 (57.72%), Postives = 87/123 (70.73%), Query Frame = 1
Query: 7 FLDIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAGA 375
FLD+PY+ +KHRLDVY+ FPR + R +F HGGSW RG RR P YGN+GRA A+ G+VG+V+SYRLAP V+HPEQV DVARA+ W N +RYGG DD+VL+GHSAGA
Sbjct: 43 FLDVPYYEGDDACEEKHRLDVYIPSAPFPRPRSRTCLFVHGGSWQRGDRRHPAVPDHFYGNVGRAFAAKGLVGLVMSYRLAPEVQHPEQVRDVARAIRWARDNASRYGGDGDDLVLVGHSAGA 165
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: W7TG47_9STRA (Esterase lipase n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG47_9STRA) HSP 1 Score: 123 bits (309), Expect = 4.170e-31 Identity = 67/129 (51.94%), Postives = 78/129 (60.47%), Query Frame = 1
Query: 1 YSFLDIPYFGD---PATAPDKHRLDVYMQD-GAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAGA 375
Y++ DIPY D P KH LDV++ G FPR Q V +F HGG W RG RR P L Y N+G ACA A +VGVVISYRLAP+V EQV DV RA+ W H + R+GG I L G SAGA
Sbjct: 96 YAWFDIPYHHDHLSPLPPDPKHHLDVFLSSSGPFPRRPQPVFLFVHGGLWMRGDRRHPYRPHL-YSNVGLACARANVVGVVISYRLAPAVTVMEQVRDVRRALEWTHKEVGRFGGDPGRIFLGGVSAGA 223
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: H5SJG9_9BACT (Lipase n=2 Tax=Candidatus Bipolaricaulota TaxID=67810 RepID=H5SJG9_9BACT) HSP 1 Score: 113 bits (283), Expect = 2.500e-28 Identity = 60/127 (47.24%), Postives = 76/127 (59.84%), Query Frame = 1
Query: 1 YSF---LDIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAG 372
YSF +I Y+ P P KHRLD+++ +G + V+IF HGG W G + LY IGRA A G VI+YRL+P V+HP + DVARA SWVH NIA+YGG + I +MGHSAG
Sbjct: 27 YSFQVYTNIAYYDGPDAHPVKHRLDLFVPEGL---KNAPVLIFVHGGGWTSGDKN-------LYSFIGRAFAEQGFATAVINYRLSPQVQHPAHIEDVARAFSWVHTNIAQYGGNPEKIFVMGHSAG 143
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: H5SCC7_9BACT (Lipase n=1 Tax=uncultured planctomycete TaxID=120965 RepID=H5SCC7_9BACT) HSP 1 Score: 110 bits (275), Expect = 9.570e-27 Identity = 59/122 (48.36%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 13 DIPYFGDPATAPDKHRLDVYMQDGA--FPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAG 372
D+ Y+ P KHRLD+Y+ GA +P V++F HGG+W G R +Y +GR A G+ V+SYRL+P+VKHPE DVARAV WVH NIARY G IVL GHSAG
Sbjct: 72 DLLYYDGPDKDDQKHRLDLYLPKGAKGYP-----VLVFVHGGAWMFGDRNFFFG---MYERLGRTFARHGVGAAVMSYRLSPAVKHPEHARDVARAVGWVHRNIARYSGDPWQIVLCGHSAG 185
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: A0A3L7QBM1_9BACT (Alpha/beta hydrolase n=3 Tax=Planctomycetes TaxID=203682 RepID=A0A3L7QBM1_9BACT) HSP 1 Score: 109 bits (272), Expect = 2.140e-26 Identity = 56/123 (45.53%), Postives = 72/123 (58.54%), Query Frame = 1
Query: 4 SFLDIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAG 372
+F +I YF D P KH+LD+Y+ G + V+ F HGG W G R YG +G+ A G+ VVISYRL+P V+HP + DVARA +W H NIA+YGGR D I + G SAG
Sbjct: 41 AFKNISYFDDKDADPKKHKLDLYLPKG---HKNYPVLFFIHGGGWTSGDRWQ-------YGMVGQVFAKNGVGVVVISYRLSPQVQHPGHIEDVARAFAWTHKNIAKYGGRADQIFISGQSAG 153
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: A0A3L7N3Z7_9BACT (Alpha/beta hydrolase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7N3Z7_9BACT) HSP 1 Score: 105 bits (261), Expect = 6.000e-25 Identity = 54/120 (45.00%), Postives = 69/120 (57.50%), Query Frame = 1
Query: 13 DIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAG 372
+I Y+ P KH+LD+++ E V F HGG+W +G + +Y IGR A GM+GVVISYRL P VKHP DVARA+SW NI +YGG + I+L GHSAG
Sbjct: 40 NIGYYEGTGKDPAKHKLDLFLPPNP---ENAPVFFFVHGGAWVQGDKNFFG----IYSAIGRLAAQNGMIGVVISYRLTPKVKHPSHAEDVARAISWTTKNIKKYGGDPERIILCGHSAG 152
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: A0A3L7QSH7_9BACT (Alpha/beta hydrolase n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7QSH7_9BACT) HSP 1 Score: 102 bits (254), Expect = 6.540e-24 Identity = 53/120 (44.17%), Postives = 68/120 (56.67%), Query Frame = 1
Query: 13 DIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAG 372
DI YF KH+LD+++ E + F HGG+W +G + +Y IGR A GM+GVVISYRL P VKHP DVARA++W NI +YGG + I+L GHSAG
Sbjct: 41 DIGYFEGAGKDSAKHKLDLFIPPNP---ENAPIFFFVHGGAWVQGDKNFFG----IYSAIGRFAAQNGMIGVVISYRLTPKVKHPSHAEDVARAIAWTTNNIKKYGGDPERIILCGHSAG 153
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: A0A519VFN0_9BACT (Alpha/beta hydrolase n=2 Tax=Hymenobacter sp. TaxID=1898978 RepID=A0A519VFN0_9BACT) HSP 1 Score: 102 bits (254), Expect = 6.770e-24 Identity = 63/126 (50.00%), Postives = 74/126 (58.73%), Query Frame = 1
Query: 13 DIPYFGDPATAPD----KHRLDVY--MQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAG 372
DI Y A+APD +HRLDVY Q PR VV+F HGGSW GG+ +Y IGR A G VGVVISYRL+P + P+Q D ARA++W A+I YGG IVLMGHSAG
Sbjct: 38 DIAYVA--ASAPDFDTNRHRLDVYEPTQAATTPRP---VVLFIHGGSWNSGGK-----DDFIYKAIGRRLAKNGFVGVVISYRLSPQARVPQQADDCARALAWTVAHIKEYGGDPARIVLMGHSAG 153 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10586 ID=mRNA_10586|Name=jgi.p|Trimin1|152337|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_74:644728..645563+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TACTCATTCCTGGACATTCCATATTTCGGGGATCCAGCTACCGCGCCCGAback to top protein sequence of jgi.p|Trimin1|152337 >Trimin1|152337|gw1.74.89.1 ID=Trimin1|152337|gw1.74.89.1|Name=jgi.p|Trimin1|152337|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=125bp YSFLDIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGback to top mRNA from alignment at Contig_74:644728..645563+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10586 ID=mRNA_10586|Name=jgi.p|Trimin1|152337|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=836bp|location=Sequence derived from alignment at Contig_74:644728..645563+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_74:644728..645563+ >mRNA_10586 ID=mRNA_10586|Name=jgi.p|Trimin1|152337|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=375bp|location=Sequence derived from alignment at Contig_74:644728..645563+ (Tribonema minus UTEX_B_3156 )back to top |