mRNA_10586 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152337
Unique NamemRNA_10586
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: A0A836C8K7_9STRA (Alpha/Beta hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K7_9STRA)

HSP 1 Score: 262 bits (669), Expect = 8.230e-89
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1
Query:    1 YSFLDIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAGA 375
            YSFLDIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAGA
Sbjct:    1 YSFLDIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAGA 125          
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: D8LGM8_ECTSI (Lipase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM8_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 6.220e-45
Identity = 71/124 (57.26%), Postives = 88/124 (70.97%), Query Frame = 1
Query:    4 SFLDIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAGA 375
            +FLD+PY+       +KHRLDVY+    FPR + R  +F HGGSW RG RR    P   YGN+GRA A+ G+VG+V+SYRLAP V+HPEQV DVARA+ W   N +RYGG  DD+VL+GHSAGA
Sbjct:   58 AFLDVPYYEGDDACEEKHRLDVYIPSAPFPRPRSRTCLFVHGGSWQRGDRRHPAVPDQFYGNVGRAFAAKGLVGLVMSYRLAPEVQHPEQVRDVARAIRWARDNASRYGGDGDDLVLVGHSAGA 181          
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: A0A6H5LKK9_9PHAE (Abhydrolase_3 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKK9_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 4.020e-44
Identity = 71/123 (57.72%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    7 FLDIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAGA 375
            FLD+PY+       +KHRLDVY+    FPR + R  +F HGGSW RG RR    P   YGN+GRA A+ G+VG+V+SYRLAP V+HPEQV DVARA+ W   N +RYGG  DD+VL+GHSAGA
Sbjct:   43 FLDVPYYEGDDACEEKHRLDVYIPSAPFPRPRSRTCLFVHGGSWQRGDRRHPAVPDHFYGNVGRAFAAKGLVGLVMSYRLAPEVQHPEQVRDVARAIRWARDNASRYGGDGDDLVLVGHSAGA 165          
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: W7TG47_9STRA (Esterase lipase n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG47_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.170e-31
Identity = 67/129 (51.94%), Postives = 78/129 (60.47%), Query Frame = 1
Query:    1 YSFLDIPYFGD---PATAPDKHRLDVYMQD-GAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAGA 375
            Y++ DIPY  D   P     KH LDV++   G FPR  Q V +F HGG W RG RR    P L Y N+G ACA A +VGVVISYRLAP+V   EQV DV RA+ W H  + R+GG    I L G SAGA
Sbjct:   96 YAWFDIPYHHDHLSPLPPDPKHHLDVFLSSSGPFPRRPQPVFLFVHGGLWMRGDRRHPYRPHL-YSNVGLACARANVVGVVISYRLAPAVTVMEQVRDVRRALEWTHKEVGRFGGDPGRIFLGGVSAGA 223          
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: H5SJG9_9BACT (Lipase n=2 Tax=Candidatus Bipolaricaulota TaxID=67810 RepID=H5SJG9_9BACT)

HSP 1 Score: 113 bits (283), Expect = 2.500e-28
Identity = 60/127 (47.24%), Postives = 76/127 (59.84%), Query Frame = 1
Query:    1 YSF---LDIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAG 372
            YSF    +I Y+  P   P KHRLD+++ +G    +   V+IF HGG W  G +        LY  IGRA A  G    VI+YRL+P V+HP  + DVARA SWVH NIA+YGG  + I +MGHSAG
Sbjct:   27 YSFQVYTNIAYYDGPDAHPVKHRLDLFVPEGL---KNAPVLIFVHGGGWTSGDKN-------LYSFIGRAFAEQGFATAVINYRLSPQVQHPAHIEDVARAFSWVHTNIAQYGGNPEKIFVMGHSAG 143          
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: H5SCC7_9BACT (Lipase n=1 Tax=uncultured planctomycete TaxID=120965 RepID=H5SCC7_9BACT)

HSP 1 Score: 110 bits (275), Expect = 9.570e-27
Identity = 59/122 (48.36%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   13 DIPYFGDPATAPDKHRLDVYMQDGA--FPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAG 372
            D+ Y+  P     KHRLD+Y+  GA  +P     V++F HGG+W  G R        +Y  +GR  A  G+   V+SYRL+P+VKHPE   DVARAV WVH NIARY G    IVL GHSAG
Sbjct:   72 DLLYYDGPDKDDQKHRLDLYLPKGAKGYP-----VLVFVHGGAWMFGDRNFFFG---MYERLGRTFARHGVGAAVMSYRLSPAVKHPEHARDVARAVGWVHRNIARYSGDPWQIVLCGHSAG 185          
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: A0A3L7QBM1_9BACT (Alpha/beta hydrolase n=3 Tax=Planctomycetes TaxID=203682 RepID=A0A3L7QBM1_9BACT)

HSP 1 Score: 109 bits (272), Expect = 2.140e-26
Identity = 56/123 (45.53%), Postives = 72/123 (58.54%), Query Frame = 1
Query:    4 SFLDIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAG 372
            +F +I YF D    P KH+LD+Y+  G    +   V+ F HGG W  G R         YG +G+  A  G+  VVISYRL+P V+HP  + DVARA +W H NIA+YGGR D I + G SAG
Sbjct:   41 AFKNISYFDDKDADPKKHKLDLYLPKG---HKNYPVLFFIHGGGWTSGDRWQ-------YGMVGQVFAKNGVGVVVISYRLSPQVQHPGHIEDVARAFAWTHKNIAKYGGRADQIFISGQSAG 153          
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: A0A3L7N3Z7_9BACT (Alpha/beta hydrolase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7N3Z7_9BACT)

HSP 1 Score: 105 bits (261), Expect = 6.000e-25
Identity = 54/120 (45.00%), Postives = 69/120 (57.50%), Query Frame = 1
Query:   13 DIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAG 372
            +I Y+      P KH+LD+++       E   V  F HGG+W +G +        +Y  IGR  A  GM+GVVISYRL P VKHP    DVARA+SW   NI +YGG  + I+L GHSAG
Sbjct:   40 NIGYYEGTGKDPAKHKLDLFLPPNP---ENAPVFFFVHGGAWVQGDKNFFG----IYSAIGRLAAQNGMIGVVISYRLTPKVKHPSHAEDVARAISWTTKNIKKYGGDPERIILCGHSAG 152          
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: A0A3L7QSH7_9BACT (Alpha/beta hydrolase n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7QSH7_9BACT)

HSP 1 Score: 102 bits (254), Expect = 6.540e-24
Identity = 53/120 (44.17%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   13 DIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAG 372
            DI YF        KH+LD+++       E   +  F HGG+W +G +        +Y  IGR  A  GM+GVVISYRL P VKHP    DVARA++W   NI +YGG  + I+L GHSAG
Sbjct:   41 DIGYFEGAGKDSAKHKLDLFIPPNP---ENAPIFFFVHGGAWVQGDKNFFG----IYSAIGRFAAQNGMIGVVISYRLTPKVKHPSHAEDVARAIAWTTNNIKKYGGDPERIILCGHSAG 153          
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Match: A0A519VFN0_9BACT (Alpha/beta hydrolase n=2 Tax=Hymenobacter sp. TaxID=1898978 RepID=A0A519VFN0_9BACT)

HSP 1 Score: 102 bits (254), Expect = 6.770e-24
Identity = 63/126 (50.00%), Postives = 74/126 (58.73%), Query Frame = 1
Query:   13 DIPYFGDPATAPD----KHRLDVY--MQDGAFPREKQRVVIFCHGGSWARGGRRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVSWVHANIARYGGRQDDIVLMGHSAG 372
            DI Y    A+APD    +HRLDVY   Q    PR    VV+F HGGSW  GG+        +Y  IGR  A  G VGVVISYRL+P  + P+Q  D ARA++W  A+I  YGG    IVLMGHSAG
Sbjct:   38 DIAYVA--ASAPDFDTNRHRLDVYEPTQAATTPRP---VVLFIHGGSWNSGGK-----DDFIYKAIGRRLAKNGFVGVVISYRLSPQARVPQQADDCARALAWTVAHIKEYGGDPARIVLMGHSAG 153          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152337 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8K7_9STRA8.230e-89100.00Alpha/Beta hydrolase protein (Fragment) n=1 Tax=Tr... [more]
D8LGM8_ECTSI6.220e-4557.26Lipase, putative n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5LKK9_9PHAE4.020e-4457.72Abhydrolase_3 domain-containing protein (Fragment)... [more]
W7TG47_9STRA4.170e-3151.94Esterase lipase n=3 Tax=Nannochloropsis gaditana T... [more]
H5SJG9_9BACT2.500e-2847.24Lipase n=2 Tax=Candidatus Bipolaricaulota TaxID=67... [more]
H5SCC7_9BACT9.570e-2748.36Lipase n=1 Tax=uncultured planctomycete TaxID=1209... [more]
A0A3L7QBM1_9BACT2.140e-2645.53Alpha/beta hydrolase n=3 Tax=Planctomycetes TaxID=... [more]
A0A3L7N3Z7_9BACT6.000e-2545.00Alpha/beta hydrolase n=1 Tax=Planctomycetes bacter... [more]
A0A3L7QSH7_9BACT6.540e-2444.17Alpha/beta hydrolase n=2 Tax=Planctomycetes bacter... [more]
A0A519VFN0_9BACT6.770e-2450.00Alpha/beta hydrolase n=2 Tax=Hymenobacter sp. TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_74contigContig_74:644728..645563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152337|gw1.74.89.1
Descriptioncarboxylic ester hydrolase activity
COG categoryI
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2272@1|root,KOG1516@2759|Eukaryota
Evalue1.02e-45
Seed ortholog2880.D8LGM8
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/beta hydrolase fold-3
Ec32 orthologEc-10_002840.1
TranscriptId152659
TrackFilteredModels1
ProteinId152337
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152337gene_10586Tribonema minus UTEX_B_3156 geneContig_74 644728..645563 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10586_1exon_10586_1Tribonema minus UTEX_B_3156 exonContig_74 644728..644871 +
exon_10586_2exon_10586_2Tribonema minus UTEX_B_3156 exonContig_74 645084..645228 +
exon_10586_3exon_10586_3Tribonema minus UTEX_B_3156 exonContig_74 645478..645563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10586CDS_10586Tribonema minus UTEX_B_3156 CDSContig_74 644728..644871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152337Trimin1|152337|gw1.74.89.1Tribonema minus UTEX_B_3156 polypeptideContig_74 644728..645563 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10586 ID=mRNA_10586|Name=jgi.p|Trimin1|152337|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_74:644728..645563+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TACTCATTCCTGGACATTCCATATTTCGGGGATCCAGCTACCGCGCCCGA
CAAGCACAGGCTGGACGTCTACATGCAGGACGGTGCGTTCCCACGCGAAA
AGCAGAGAGTGGTCATATTCTGCCATGGCGGCAGCTGGGCGAGGGGTGGC
AGGCGCATGTCCTTGGCACCACAGCTGCTGTACGGCAATATCGGGCGGGC
TTGTGCTTCAGCGGGCATGGTGGGAGTTGTCATATCCTACAGGCTTGCGC
CATCGGTGAAGCACCCAGAGCAGGTGCTGGACGTTGCACGCGCGGTGTCA
TGGGTCCACGCCAACATTGCACGCTACGGAGGAAGGCAGGACGACATAGT
GCTCATGGGACACTCCGCGGGAGCG
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protein sequence of jgi.p|Trimin1|152337

>Trimin1|152337|gw1.74.89.1 ID=Trimin1|152337|gw1.74.89.1|Name=jgi.p|Trimin1|152337|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=125bp
YSFLDIPYFGDPATAPDKHRLDVYMQDGAFPREKQRVVIFCHGGSWARGG
RRMSLAPQLLYGNIGRACASAGMVGVVISYRLAPSVKHPEQVLDVARAVS
WVHANIARYGGRQDDIVLMGHSAGA
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mRNA from alignment at Contig_74:644728..645563+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10586 ID=mRNA_10586|Name=jgi.p|Trimin1|152337|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=836bp|location=Sequence derived from alignment at Contig_74:644728..645563+ (Tribonema minus UTEX_B_3156 )
TACTCATTCCTGGACATTCCATATTTCGGGGATCCAGCTACCGCGCCCGA CAAGCACAGGCTGGACGTCTACATGCAGGACGGTGCGTTCCCACGCGAAA AGCAGAGAGTGGTCATATTCTGCCATGGCGGCAGCTGGGCGAGGGTGAGT CCGCATGATCCCACTTGAAGGTGCGGCACAGATGCGATCCATAGTGCGGT TGTTGTTGTTGTGTCAACCATCAAGCCACGATGACCAAACGCGCCTAGAG AGGCCCGGATACAACCCAGAGCATTGACTTAGATCCTCTTTGCACGCGCT GGCAACCCAAAGCTTGGTTGCTCATTCGCGACATGCATGTATGTTCGCTG CTTCAGGGTGGCAGGCGCATGTCCTTGGCACCACAGCTGCTGTACGGCAA TATCGGGCGGGCTTGTGCTTCAGCGGGCATGGTGGGAGTTGTCATATCCT ACAGGCTTGCGCCATCGGTGAAGCACCCAGAGCAGGTGCTGGACGTTGCA CGTAAGTTGGGGTCGCCGGCACTCTGAAGCAGGGCATGCTGCTTGACTGG TGGTGCTGCCTGACAACTGCCTGTGATGCGCAACGGTAATGGCTTTTGAA TTATCCCACCAGATTATAGTGAGCGATTGCAGGACCTGATCTAAACTGAT GCGCGTGCTGAACGCAGCTCGTGCGCTTCTGCTTCTGCTGCTGCTTTTGC TGCTGCTGCTGCTACGGCTGCTGCTGTTCATGTCGCTGCTGCCCGTGCAG GCGCGGTGTCATGGGTCCACGCCAACATTGCACGCTACGGAGGAAGGCAG GACGACATAGTGCTCATGGGACACTCCGCGGGAGCG
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Coding sequence (CDS) from alignment at Contig_74:644728..645563+

>mRNA_10586 ID=mRNA_10586|Name=jgi.p|Trimin1|152337|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=375bp|location=Sequence derived from alignment at Contig_74:644728..645563+ (Tribonema minus UTEX_B_3156 )
TACTCATTCCTGGACATTCCATATTTCGGGGATCCAGCTACCGCGCCCGA
CAAGCACAGGCTGGACGTCTACATGCAGGACGGTGCGTTCCCACGCGAAA
AGCAGAGAGTGGTCATATTCTGCCATGGCGGCAGCTGGGCGAGGGGTGGC
AGGCGCATGTCCTTGGCACCACAGCTGCTGTACGGCAATATCGGGCGGGC
TTGTGCTTCAGCGGGCATGGTGGGAGTTGTCATATCCTACAGGCTTGCGC
CATCGGTGAAGCACCCAGAGCAGGTGCTGGACGTTGCACGCGCGGTGTCA
TGGGTCCACGCCAACATTGCACGCTACGGAGGAAGGCAGGACGACATAGT
GCTCATGGGACACTCCGCGGGAGCG
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