mRNA_10574 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A835YM88_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM88_9STRA) HSP 1 Score: 147 bits (372), Expect = 7.310e-45 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1
Query: 1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSKPRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSKPRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT
Sbjct: 1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSKPRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 82
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A089VHI2_9STRA (ATP synthase subunit b', chloroplastic n=2 Tax=Rhizosolenia TaxID=3004 RepID=A0A089VHI2_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 4.650e-17 Identity = 49/85 (57.65%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYK---SKPRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
N ILY+PLL VI +RN+YI NLA AS IL+Q+N L +Y+ SK RKEAQLEI+ QK+HK ILETE SQK ID +T
Sbjct: 41 NIILYSPLLAVITERNEYILNNLAKASEILAQANDLTAEYEQELSKVRKEAQLEITNSQKIHKEILETELIISQKYIDNLLDNVT 125
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A023HC60_9STRA (ATP synthase subunit b', chloroplastic n=2 Tax=Coscinodiscus TaxID=33641 RepID=A0A023HC60_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.860e-16 Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSK---PRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
N ILY+PLL+VI +RN+YI NLA AS ILS++N+L QY+ + RKEAQLEI+ QK+HK ILE E SQK ID IT
Sbjct: 41 NIILYSPLLSVITERNEYILNNLAKASEILSEANKLTAQYEQELTSVRKEAQLEITNSQKIHKEILEIELNISQKYIDNLLDTIT 125
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A0S0GJT6_COSCS (ATP synthase CF0 B' chain subunit II n=27 Tax=Laminariales TaxID=2886 RepID=A0A0S0GJT6_COSCS) HSP 1 Score: 77.8 bits (190), Expect = 2.620e-16 Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 1
Query: 1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYK---SKPRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
NFILYTPLL+ I++RN YI K+L A+S+L++SNQL +Y+ SK RK A+L++ T QKL+K ILE + KSSQ ID+F ++ T
Sbjct: 41 NFILYTPLLDTIDERNLYIKKSLDEATSVLTKSNQLNVKYEAKTSKARKAAKLDLLTYQKLYKDILEEKMKSSQLFIDKFLIETT 125
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A023HB42_LITUN (ATP synthase subunit b', chloroplastic n=1 Tax=Lithodesmium undulatum TaxID=59812 RepID=A0A023HB42_LITUN) HSP 1 Score: 76.6 bits (187), Expect = 7.400e-16 Identity = 47/85 (55.29%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSK---PRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
N ILY PLL +I +R +YI NLA AS ILSQ+N+L QY+ + RKEAQLEI+ QK+HK ILE E SQK ID IT
Sbjct: 41 NIILYNPLLTIIEERKEYILNNLAKASKILSQANELTAQYEQELNSVRKEAQLEITNSQKIHKEILEIELNISQKYIDNLLDNIT 125
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A8A6KMM1_9STRA (ATP synthase subunit b', chloroplastic n=1 Tax=Coscinodiscus granii TaxID=265552 RepID=A0A8A6KMM1_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.050e-15 Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 1
Query: 1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSK---PRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
N ILY PLLN+I +RN+YI NLA AS L+++NQL QY+ + RKEAQLEI+ QK+HK IL+ E SQK ID IT
Sbjct: 41 NIILYNPLLNIITERNEYILNNLAKASKTLAEANQLTAQYEQELNSVRKEAQLEITNSQKIHKEILDIELTISQKYIDNLLDTIT 125
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A2U9NNX9_9STRA (ATP synthase subunit b', chloroplastic n=1 Tax=Guinardia striata TaxID=1514137 RepID=A0A2U9NNX9_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.050e-15 Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = 1
Query: 1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSK---PRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
N +LY+PLL VI +RN+YI NLA AS IL+Q+N+L QY+ + RKEAQLEI+ QK+HK ILE E SQK ID IT
Sbjct: 41 NTVLYSPLLEVIAERNEYILNNLAKASEILAQANELTAQYEQELNSVRKEAQLEITNSQKIHKEILEIELNISQKYIDNLLDTIT 125
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A089VPZ1_CERBC (ATP synthase subunit b', chloroplastic n=11 Tax=Bacillariophyta TaxID=2836 RepID=A0A089VPZ1_CERBC) HSP 1 Score: 75.9 bits (185), Expect = 1.480e-15 Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSK---PRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
N +LY+PLL +I++R +YI NLA AS ILSQ+N+L TQY+ + RKEAQLEI+ QK+HK ILE E SQK ID IT
Sbjct: 41 NALLYSPLLAIISERKEYILGNLAKASEILSQANELTTQYEQELDSVRKEAQLEITNSQKIHKEILEIELNISQKYIDNLLDTIT 125
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A8F0FAP4_9PHAE (CF0 subunit II n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAP4_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 2.090e-15 Identity = 45/85 (52.94%), Postives = 64/85 (75.29%), Query Frame = 1
Query: 1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYK---SKPRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
NFILYTPLL+ I++RN YI +L A+++L++SNQL T+Y+ SK RK A+L++ T QKL+K IL+ + KSSQ ID+F V+ T
Sbjct: 41 NFILYTPLLDTIDERNIYIKTSLEEATNVLAKSNQLNTKYEKKASKARKAAKLDLITYQKLYKDILDEKMKSSQIFIDDFLVETT 125
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A2U9NP93_9STRA (ATP synthase subunit b', chloroplastic n=1 Tax=Eunotogramma sp. TaxID=2219035 RepID=A0A2U9NP93_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 2.090e-15 Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 1
Query: 1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSK---PRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
N ILY+PLL +I +R +YI NLA AS IL+Q+N+L QY+ + RKEAQLEI+ QK+HK ILE E SQK ID IT
Sbjct: 41 NVILYSPLLTIIEERKEYILSNLAKASEILAQANELTAQYEEELDTVRKEAQLEITNSQKIHKEILEIELNISQKYIDNLLETIT 125 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10574 ID=mRNA_10574|Name=jgi.p|Trimin1|151919|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=246bp|location=Sequence derived from alignment at Contig_74:558680..558980+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AATTTCATACTGTATACTCCTCTTTTAAATGTTATTAATGACCGTAATCAback to top protein sequence of jgi.p|Trimin1|151919 >Trimin1|151919|gw1.74.83.1 ID=Trimin1|151919|gw1.74.83.1|Name=jgi.p|Trimin1|151919|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=82bp NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSKPRKEAQLback to top mRNA from alignment at Contig_74:558680..558980+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10574 ID=mRNA_10574|Name=jgi.p|Trimin1|151919|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=301bp|location=Sequence derived from alignment at Contig_74:558680..558980+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_74:558680..558980+ >mRNA_10574 ID=mRNA_10574|Name=jgi.p|Trimin1|151919|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=246bp|location=Sequence derived from alignment at Contig_74:558680..558980+ (Tribonema minus UTEX_B_3156 )back to top |