mRNA_10572 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|148778
Unique NamemRNA_10572
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|148778 vs. uniprot
Match: A0A836CAA5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAA5_9STRA)

HSP 1 Score: 157 bits (398), Expect = 4.150e-49
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 KRKFFVLRGGSLSYHKDHKSVDDPAHSREVLLTEDCDVEYFYDPPGAPFGLCVAAPGKVRQTTRGYLGKRNAG 219
            KRKFFVLRGGSLSYHKDHKSVDDPAHSREVLLTEDCDVEYFYDPPGAPFGLCVAAPGKVRQTTRGYLGKRNAG
Sbjct:    1 KRKFFVLRGGSLSYHKDHKSVDDPAHSREVLLTEDCDVEYFYDPPGAPFGLCVAAPGKVRQTTRGYLGKRNAG 73
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BLAST of jgi.p|Trimin1|148778 vs. uniprot
Match: A0A835ZB29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB29_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.940e-29
Identity = 61/98 (62.24%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:    1 KRKFFVLRGGSLSYHKDHKSVDDPAHSREVLLTEDCDVEYFYDPPGAPFGLCVAAPGKV-------------------------RQTTRGYLGKRNAG 219
            KRKFFVLRGGSL+YHKDH SVDDP  SRE+LLT DCDVEYFYDPP APFG CV + GKV                         RQTTRGYL KRNAG
Sbjct:   38 KRKFFVLRGGSLTYHKDHHSVDDPTSSREILLTADCDVEYFYDPPTAPFGFCVTSRGKVLQLVAKDVMERQEWKDAISMVINQVRQTTRGYLLKRNAG 135
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BLAST of jgi.p|Trimin1|148778 vs. uniprot
Match: D7G545_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G545_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.070e-13
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    1 KRKFFVLRGGSLSYHKDHKSVDDPAHSREVLLTEDCDVEYFYDPPGAPFGLCVAAPGKVRQTTRGYLGKRNAG 219
            K++FFVL G SL YH DHK++DDP +S+E++L E+  +  F + P   F + + A GK++ +TRGYL K  AG
Sbjct:    6 KKRFFVLTGESLLYHHDHKNLDDPLNSKEIILDENSVIS-FSNEPSLGFAIELIADGKLKGSTRGYLMKLRAG 77
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148778 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CAA5_9STRA4.150e-49100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZB29_9STRA2.940e-2962.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G545_ECTSI1.070e-1346.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_74contigContig_74:515514..516784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|148778|gw1.74.73.1
Hectar predicted targeting categoryother localisation
TranscriptId149100
TrackFilteredModels1
ProteinId148778
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148778gene_10572Tribonema minus UTEX_B_3156 geneContig_74 515514..516784 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10572_1exon_10572_1Tribonema minus UTEX_B_3156 exonContig_74 515514..515687 +
exon_10572_2exon_10572_2Tribonema minus UTEX_B_3156 exonContig_74 516740..516784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10572CDS_10572Tribonema minus UTEX_B_3156 CDSContig_74 515514..515687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148778Trimin1|148778|gw1.74.73.1Tribonema minus UTEX_B_3156 polypeptideContig_74 515514..516784 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10572 ID=mRNA_10572|Name=jgi.p|Trimin1|148778|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=219bp|location=Sequence derived from alignment at Contig_74:515514..516784+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGCGCAAGTTCTTCGTCCTGCGCGGCGGCTCGCTGAGCTACCACAAGGA
CCACAAGAGCGTCGACGACCCCGCGCACTCGCGCGAGGTGCTGCTCACCG
AGGACTGCGACGTCGAGTACTTCTACGACCCGCCGGGGGCGCCGTTCGGC
CTGTGCGTGGCGGCGCCGGGGAAGGTGCGGCAGACGACGCGCGGCTACCT
CGGTAAGCGCAACGCCGGA
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protein sequence of jgi.p|Trimin1|148778

>Trimin1|148778|gw1.74.73.1 ID=Trimin1|148778|gw1.74.73.1|Name=jgi.p|Trimin1|148778|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=73bp
KRKFFVLRGGSLSYHKDHKSVDDPAHSREVLLTEDCDVEYFYDPPGAPFG
LCVAAPGKVRQTTRGYLGKRNAG
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mRNA from alignment at Contig_74:515514..516784+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10572 ID=mRNA_10572|Name=jgi.p|Trimin1|148778|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1271bp|location=Sequence derived from alignment at Contig_74:515514..516784+ (Tribonema minus UTEX_B_3156 )
AAGCGCAAGTTCTTCGTCCTGCGCGGCGGCTCGCTGAGCTACCACAAGGA
CCACAAGAGCGTCGACGACCCCGCGCACTCGCGCGAGGTGCTGCTCACCG
AGGACTGCGACGTCGAGTACTTCTACGACCCGCCGGGGGCGCCGTTCGGC
CTGTGCGTGGCGGCGCCGGGGAAGGTGCGGCGCGCGCGGTCTGGGCTCGG
GGGGTGTCCGCGCACCGTTTGGGGCTGTGGCGCATGGCAGTATCGGGCAA
ACCGACGCATGTGCTATTGGGAAGTGTACACGGGGTGCCTATATGACCTG
CCGATGGCGCCGTCTGGGCAGTGCGGCGCGGCGCCGGGAAAGGCAGGGCG
CGCTGCTCGCGCAGCACGCTGTGTGCACTGCGGGCGACGCTGCAGGCGTA
CACGCTGCTGCACGCCAAGCAGCAGCGGCGGCTGCTGCGCACTGCGCCGA
GCGGCGCATGCGCAGATGCTGCGTCGTGCGCGGCGCTTGAACACCCAAGT
CAACGGCCTCCGCCGAGCTCCGCGTCATGAAGCAATGCTCAAGAGCGGTC
TCATCAGTCAGCTGTTACGGAGTGTGCATCAGCTACCTGAGGAACTGCTG
TTGTGAAGCGCGGGTGCTGGCTCAGCAGTAGGCGATGCAGCATTGGGCCA
CACGCATAAGCTTCATCGCTGTGGCTCAAATATTGTGTAAAGTGATTTCT
GCCCTTCAGTGCCAGCAGCCCCCTCGCAGCGACACCGACAACTTGATAGA
CCAGCAGTCAATAAACACTGCAGCATGCATGACACTGCAGCACGCGGAGC
GTACACAGTTGCAGCTCCGGCGTGGCAGTTCTCAGCTGACGGGCACTGGC
TGCTGCAAATCCTGCGCTCGCTCTCGCACGAGCAGGTGTTGCAGCTGGTG
GCGCGCGACGTGCTGGAGCGGCAGGAGTGGAAGGACGCTATTTGCATGGT
CATCAATCAGGTGCGCGTACGGAATTGTGGAAGGTGCCGCCACAATGTTG
TGGGCGGCGCGTCAGGACGCTGCTATCGGGACTGTCACAACATGCGTTGT
GCAAGCGCGTATTGCCTGCGACACGGGCGCGAGCTCAGAGCGCTGCGCCT
ACACGTGTGTGCGGGACGGCGGCGATGCCGCTGAAAGGGCGCACCACTGC
CCTCAGTTGCCATGACGCCACAAAGCGCGTTGTGATCCCGGAATGCTTGC
TGTGCCGTTGCGCGCGTGCTCTGCAGGTGCGGCAGACGACGCGCGGCTAC
CTCGGTAAGCGCAACGCCGGA
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Coding sequence (CDS) from alignment at Contig_74:515514..516784+

>mRNA_10572 ID=mRNA_10572|Name=jgi.p|Trimin1|148778|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=219bp|location=Sequence derived from alignment at Contig_74:515514..516784+ (Tribonema minus UTEX_B_3156 )
AAGCGCAAGTTCTTCGTCCTGCGCGGCGGCTCGCTGAGCTACCACAAGGA
CCACAAGAGCGTCGACGACCCCGCGCACTCGCGCGAGGTGCTGCTCACCG
AGGACTGCGACGTCGAGTACTTCTACGACCCGCCGGGGGCGCCGTTCGGC
CTGTGCGTGGCGGCGCCGGGGAAGGTGCGGCAGACGACGCGCGGCTACCT
CGGTAAGCGCAACGCCGGA
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