mRNA_10543 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: A0A835YK91_9STRA (TLDc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK91_9STRA) HSP 1 Score: 520 bits (1340), Expect = 1.960e-185 Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 2
Query: 62 MMAEQQQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGAAQLTELKAFVGVYAKDEEIPFDDVIYLSFT 814
MMAEQQQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGAAQLTELKAFVGVYAKDEEIPFDDVIYLSFT
Sbjct: 1 MMAEQQQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGAAQLTELKAFVGVYAKDEEIPFDDVIYLSFT 251
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: A0A6V1NAM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAM7_HETAK) HSP 1 Score: 310 bits (794), Expect = 1.370e-101 Identity = 151/251 (60.16%), Postives = 187/251 (74.50%), Query Frame = 2
Query: 71 EQQQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSK--RPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGA-AQLTELKAFVGVYAKDEEIPFDDVIYLSFT 814
++ QD VE+ F F FGQK +E P+G+KR E FPDQ+PATK +ADPV GD+KDMA+FRP L QT LE RKLK VYDA ++GW P AFH+GVDK GPGV++A+T GGAV+GGYNPKGWVG EYRPGLSAFLFTWPDG+T + +KLRK+GGAGLA D+ GP FG++GLC+ + +R+A+C LG+YYERMP G S+FA GE A +L +LKA+VG+YAK EEIPF+D I S T
Sbjct: 64 QEDQDPVEKLFSFFFGQK---EEEPLGLKRFNKETFPDQFPATKTEFADPVPGDSKDMAVFRPLLKQTELESRKLKLVYDANKNGWNPTAFHKGVDKLGPGVIVAKTKGGAVIGGYNPKGWVGYGEYRPGLSAFLFTWPDGNTVDYTKALKLRKIGGAGLAVIDKPEEGPVFGADGLCIRMAPKK-----QRIAQCSLGSYYERMPGGKKSLFAQGESLANTELVDLKAYVGIYAKGEEIPFNDAIPFSLT 306
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: D8LBZ9_ECTSI (TLDc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBZ9_ECTSI) HSP 1 Score: 308 bits (789), Expect = 1.330e-100 Identity = 154/252 (61.11%), Postives = 191/252 (75.79%), Query Frame = 2
Query: 71 EQQQDIVERFFGFVFGQKALDDEAPMG-MKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGSGGGGAERVARCKLGAYYERMPD--GGNSMFAPGEKGA-AQLTELKAFVGVYAKDEEIPFDDVIYLSFT 814
E+QQD++E+FF FG K D+AP G + R+T++ FPDQYPA K A+PV GD+KDMA+ RP L QT LE RKLK VYDA R+GW+PAAFH+GVD KGPG+V+ +T GGAVVGGYNPKGWVG EYRPGLSAFLFTW DGDT+KR +KLRK+GGAGLA +D+ GP FGS+G V + GS ER+ R KLG+YYER+P GG S+FAPG+ G A++ +LKA+VGVY + E+IPFDD I S +
Sbjct: 79 EEQQDVIEKFFSMFFGNK---DDAPGGDLDRITVKKFPDQYPAEKILQAEPVKGDSKDMAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTNKRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGMQKGS-----ERMGRSKLGSYYERLPAAYGGASIFAPGDNGGIAEMVDLKAYVGVYERGEKIPFDDAIPFSLS 322
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: A0A7S0DY99_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DY99_9CRYP) HSP 1 Score: 280 bits (716), Expect = 4.100e-87 Identity = 139/238 (58.40%), Postives = 168/238 (70.59%), Query Frame = 2
Query: 92 ERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDA--GSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGAAQLTELKAFVGVYAKDEEIPFDDVI 799
E+FF +FG+ E +G+KR FP+ YPAT +A PVA D FRP LA+T LEKR+LK V+DA RDGW P AFH VDK GPGVVLART GAVVGGYNPKGWVG EYR ++AFLF+WPDGDTSK +KLRKVGGAGLAC D +GP FG++GL +PL+A G ER+ARCKLG YYE+ PDG N++F EK A LT+LK +VGVY + EEIP++D +
Sbjct: 272 EKFFASLFGKIGASPEQ-VGLKRFDQSKFPELYPATLTEFAAPVASDDATAQQFRPLLAKTSLEKRELKLVFDANRDGWTPGAFHGAVDKLGPGVVLARTEQGAVVGGYNPKGWVGYGEYRGSIAAFLFSWPDGDTSKPAIKLRKVGGAGLACIDDPESGPRFGADGLHIPLEAPRSEAEAGRERLARCKLGPYYEKRPDGSNTIFTKAEKATATLTDLKVYVGVYEEGEEIPYNDAL 508
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: A0A5J4YZD4_PORPP (TLDc domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZD4_PORPP) HSP 1 Score: 264 bits (675), Expect = 1.340e-83 Identity = 137/265 (51.70%), Postives = 180/265 (67.92%), Query Frame = 2
Query: 26 AAAGSGRRGSVVMMAEQQQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKD--MALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPL-DA-GSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGAAQLTELKAFVGVYAKDEEIPFDDVIYLS 808
A G R G+ AE+ D++ER ++ +K ++ P G+ R + FP+ +PA + ADPV GD KD + L RP +A+T L+ R ++CV+DA GW+ A+FHR VDK+GP VVLART GGAVVGGY+PKGWVG E R ++AFLFTWPDGDTSKR +KLRK+G A +A D+ +GP FG+EGL +PL DA + G ERVARCKLG YY+++PDG S+FA GE +L L+AFVG+Y DEEIPF D + S
Sbjct: 43 AVVGKTRLGAEQQDAEEDLDVIERAMKWLGFKK---EKTPFGLARFDRDKFPELWPAELEEQADPVEGDEKDPDLQLIRPMMARTSLQTRPMECVFDAEVHGWKAASFHRCVDKRGPAVVLARTKGGAVVGGYSPKGWVGYGESRGSIAAFLFTWPDGDTSKRSIKLRKIGMASMASMDQPESGPRFGAEGLTIPLLDARATEYDGTERVARCKLGTYYDKLPDGSKSLFAHGEGLLTELVSLRAFVGIYGSDEEIPFLDALPFS 304
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: R7QPM3_CHOCR (TLDc domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPM3_CHOCR) HSP 1 Score: 259 bits (661), Expect = 1.840e-81 Identity = 137/248 (55.24%), Postives = 167/248 (67.34%), Query Frame = 2
Query: 77 QQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLD---AGSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGAAQ-LTELKAFVGVYAKDEEIPFDDVIYLS 808
+ DIVER + +FG K + P G+KR + FP+ YPAT D +ADPV DT +MALFRP LA+T L+ R+++ +YDA RDGW FH +++KG VV+A TAG AV GGYNPKG+VG E R +AFLFTWPDGDTSK VKLRKVGGA LA D TGP FG++ L VPL A G +R+A KLG+YYER PDGGN++FA GE + L ELK F GVYA EEIPFDD + S
Sbjct: 63 EMDIVERVYTAIFGAKQAE---PFGLKRFDRDRFPELYPATLDEFADPVPADTPEMALFRPLLARTQLQTREIQLLYDANRDGWSADTFHEALNRKGASVVMASTAG-AVFGGYNPKGFVGYGESRGSKAAFLFTWPDGDTSKPAVKLRKVGGAALAVVDEPETGPKFGADSLVVPLRPPRANWGESQKDRIAYSKLGSYYERRPDGGNTLFANGENPKGEVLQELKVFAGVYADGEEIPFDDALPFS 306
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: L1IZU1_GUITC (TLDc domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IZU1_GUITC) HSP 1 Score: 249 bits (635), Expect = 3.630e-79 Identity = 120/188 (63.83%), Postives = 141/188 (75.00%), Query Frame = 2
Query: 242 MALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDA--GSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGAAQLTELKAFVGVYAKDEEIPFDDVI 799
M FRP LA+T LEKR LK V+DA RDGW P+AFH VDK GPGVVLART GAVVGGYNPKGWVG EYR ++AFLF WPDGDTS+ +KLRKVGGAGLAC D +GP FG++G VPL+A G G ER+ARCKLG YYE+ PDG N++F EK A LT+LK +VG+Y DEEIP++D +
Sbjct: 1 MQQFRPLLARTSLEKRDLKLVFDANRDGWTPSAFHLAVDKLGPGVVLARTEQGAVVGGYNPKGWVGYGEYRGSIAAFLFCWPDGDTSRPAIKLRKVGGAGLACIDDPESGPRFGADGFHVPLEAPRSEGEAGRERLARCKLGPYYEKRPDGSNTIFTKAEKATATLTDLKVYVGIYDADEEIPYNDAL 188
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: A0A7S2ZTI4_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZTI4_9RHOD) HSP 1 Score: 248 bits (633), Expect = 1.220e-77 Identity = 129/254 (50.79%), Postives = 170/254 (66.93%), Query Frame = 2
Query: 44 RRGSVVMMAEQQQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAG--SGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGAAQLTELKAFVGVYAKDEEIPFDDVI 799
RR V+M E+ D+ E+ FG +FG++ +E P+G +R + FP+QY AT D +ADPVA DT++MALFRP LA+T L R+L+ +YDA GW +AFH V+KKG GVVLA T GG V GGYNPKGWVG E R L++FLFTWP GDTSK +KLRKVGG ++ D TGP FG++GL V L + + G+E++A KLG +YE PDG +F+ E +L L+A+ GVY + EEIPFDD +
Sbjct: 26 RRSRRVVMREK--DLGEKLFGLIFGKQ---EETPLGFQRFDRDRFPEQYEATLDEFADPVASDTEEMALFRPMLARTQLVTRELQLLYDAEEHGWTASAFHECVNKKGAGVVLAVTEGGTVCGGYNPKGWVGYGESRGSLASFLFTWPGGDTSKPAIKLRKVGGKSMSVLDDPETGPKFGADGLVVMLMSPFQTELDGSEKIASSKLGTFYEVRPDGVRHLFSKAEGKKTKLVSLRAYFGVYEEGEEIPFDDAV 274
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: A0A7S1TFM7_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TFM7_9RHOD) HSP 1 Score: 248 bits (633), Expect = 2.450e-77 Identity = 124/250 (49.60%), Postives = 167/250 (66.80%), Query Frame = 2
Query: 74 QQQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGS--GGGGAERVARCKLGAYYERMPDGGNSMFAPGE---KGAAQLTELKAFVGVYAKDEEIPFDDVIYLS 808
+ D++E+ FG FG+K +E P+G+KR + FP+Q+PA D +A+ V GD+KD+ALFRP LA+T L +R L+ V+D DGW AFHR VD++G GVVL RT G V GGYNPKGWVG E R +++FLFTWPDG+T+K +K+RKVG A L+ D TGP FG++ L +PL G G+E+ AR KLG+YYER+PDG N +F KG + +K FVGVY + E+IPF+D + S
Sbjct: 53 EDSDLLEKLFGVFFGKK---EENPLGLKRFDRDRFPEQFPAPLDEFAEAVQGDSKDVALFRPLLARTQLCRRSLRLVFDTDSDGWTAEAFHRAVDRQGAGVVLLRTVDGVVCGGYNPKGWVGYGESRGSVASFLFTWPDGNTNKPAMKMRKVGQAYLSVLDNPETGPQFGADSLVIPLQDTRLRGPDGSEKQARSKLGSYYERLPDGRNCLFPDSSHPRKGYCYVDSVKVFVGVYEEGEQIPFNDALPFS 299
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: A0A7S4EVG5_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EVG5_CHRCT) HSP 1 Score: 247 bits (631), Expect = 4.110e-76 Identity = 130/260 (50.00%), Postives = 166/260 (63.85%), Query Frame = 2
Query: 35 GSGRRGSVVMMAEQ----QQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGA-AQLTELKAFVGVYAKDEEIPFDDVI 799
G+ +R SV +A + + D +E+ FG FG + A G+ R + PD YPATK +ADPV GD ++ + RP L T LE L+ YDA RDGWR A FH VDK GP +V+ T GGAV GGY PKG+ G EYR ++AFL+TWPDGDT + P+KL+K+GGAGLA D TGP FG+EGL +P+D GS ER+AR KLG YYERMPDGG S+FA + +L EL+ +VGV+ + E IPFD I
Sbjct: 116 GANKRHSVHPIANEDNKNEPDFIEKLFGVFFGAPQEGEVA--GLARTA--SAPDTYPATKTEFADPVEGDIEEATILRPLLKNTNLEYLPLRLAYDANRDGWRAADFHEKVDKTGPCIVVCETEGGAVCGGYAPKGFAGYGEYRGSIAAFLYTWPDGDTDRAPIKLQKMGGAGLATIDEPETGPRFGAEGLSIPMDPGS-----ERIARSKLGPYYERMPDGGGSIFAANDNSKRCELKELRVYVGVWPEGERIPFDGAI 366 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10543 ID=mRNA_10543|Name=jgi.p|Trimin1|88709|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1018bp|location=Sequence derived from alignment at Contig_74:326686..330529+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTTCACACAGCGGAGACAGGCTGGCGCAGCAGCAGGATCTGGCAGGCGAGback to top protein sequence of jgi.p|Trimin1|88709 >Trimin1|88709|CE88708_65 ID=Trimin1|88709|CE88708_65|Name=jgi.p|Trimin1|88709|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=252bp MMAEQQQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWback to top mRNA from alignment at Contig_74:326686..330529+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10543 ID=mRNA_10543|Name=jgi.p|Trimin1|88709|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3844bp|location=Sequence derived from alignment at Contig_74:326686..330529+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_74:326686..330529+ >mRNA_10543 ID=mRNA_10543|Name=jgi.p|Trimin1|88709|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=756bp|location=Sequence derived from alignment at Contig_74:326686..330529+ (Tribonema minus UTEX_B_3156 )back to top |