mRNA_10543 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|88709
Unique NamemRNA_10543
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: A0A835YK91_9STRA (TLDc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK91_9STRA)

HSP 1 Score: 520 bits (1340), Expect = 1.960e-185
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 2
Query:   62 MMAEQQQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGAAQLTELKAFVGVYAKDEEIPFDDVIYLSFT 814
            MMAEQQQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGAAQLTELKAFVGVYAKDEEIPFDDVIYLSFT
Sbjct:    1 MMAEQQQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGAAQLTELKAFVGVYAKDEEIPFDDVIYLSFT 251          
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: A0A6V1NAM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAM7_HETAK)

HSP 1 Score: 310 bits (794), Expect = 1.370e-101
Identity = 151/251 (60.16%), Postives = 187/251 (74.50%), Query Frame = 2
Query:   71 EQQQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSK--RPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGA-AQLTELKAFVGVYAKDEEIPFDDVIYLSFT 814
            ++ QD VE+ F F FGQK   +E P+G+KR   E FPDQ+PATK  +ADPV GD+KDMA+FRP L QT LE RKLK VYDA ++GW P AFH+GVDK GPGV++A+T GGAV+GGYNPKGWVG  EYRPGLSAFLFTWPDG+T    + +KLRK+GGAGLA  D+   GP FG++GLC+ +         +R+A+C LG+YYERMP G  S+FA GE  A  +L +LKA+VG+YAK EEIPF+D I  S T
Sbjct:   64 QEDQDPVEKLFSFFFGQK---EEEPLGLKRFNKETFPDQFPATKTEFADPVPGDSKDMAVFRPLLKQTELESRKLKLVYDANKNGWNPTAFHKGVDKLGPGVIVAKTKGGAVIGGYNPKGWVGYGEYRPGLSAFLFTWPDGNTVDYTKALKLRKIGGAGLAVIDKPEEGPVFGADGLCIRMAPKK-----QRIAQCSLGSYYERMPGGKKSLFAQGESLANTELVDLKAYVGIYAKGEEIPFNDAIPFSLT 306          
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: D8LBZ9_ECTSI (TLDc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBZ9_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 1.330e-100
Identity = 154/252 (61.11%), Postives = 191/252 (75.79%), Query Frame = 2
Query:   71 EQQQDIVERFFGFVFGQKALDDEAPMG-MKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGSGGGGAERVARCKLGAYYERMPD--GGNSMFAPGEKGA-AQLTELKAFVGVYAKDEEIPFDDVIYLSFT 814
            E+QQD++E+FF   FG K   D+AP G + R+T++ FPDQYPA K   A+PV GD+KDMA+ RP L QT LE RKLK VYDA R+GW+PAAFH+GVD KGPG+V+ +T GGAVVGGYNPKGWVG  EYRPGLSAFLFTW DGDT+KR +KLRK+GGAGLA +D+   GP FGS+G  V +  GS     ER+ R KLG+YYER+P   GG S+FAPG+ G  A++ +LKA+VGVY + E+IPFDD I  S +
Sbjct:   79 EEQQDVIEKFFSMFFGNK---DDAPGGDLDRITVKKFPDQYPAEKILQAEPVKGDSKDMAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTNKRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGMQKGS-----ERMGRSKLGSYYERLPAAYGGASIFAPGDNGGIAEMVDLKAYVGVYERGEKIPFDDAIPFSLS 322          
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: A0A7S0DY99_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DY99_9CRYP)

HSP 1 Score: 280 bits (716), Expect = 4.100e-87
Identity = 139/238 (58.40%), Postives = 168/238 (70.59%), Query Frame = 2
Query:   92 ERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDA--GSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGAAQLTELKAFVGVYAKDEEIPFDDVI 799
            E+FF  +FG+     E  +G+KR     FP+ YPAT   +A PVA D      FRP LA+T LEKR+LK V+DA RDGW P AFH  VDK GPGVVLART  GAVVGGYNPKGWVG  EYR  ++AFLF+WPDGDTSK  +KLRKVGGAGLAC D   +GP FG++GL +PL+A       G ER+ARCKLG YYE+ PDG N++F   EK  A LT+LK +VGVY + EEIP++D +
Sbjct:  272 EKFFASLFGKIGASPEQ-VGLKRFDQSKFPELYPATLTEFAAPVASDDATAQQFRPLLAKTSLEKRELKLVFDANRDGWTPGAFHGAVDKLGPGVVLARTEQGAVVGGYNPKGWVGYGEYRGSIAAFLFSWPDGDTSKPAIKLRKVGGAGLACIDDPESGPRFGADGLHIPLEAPRSEAEAGRERLARCKLGPYYEKRPDGSNTIFTKAEKATATLTDLKVYVGVYEEGEEIPYNDAL 508          
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: A0A5J4YZD4_PORPP (TLDc domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZD4_PORPP)

HSP 1 Score: 264 bits (675), Expect = 1.340e-83
Identity = 137/265 (51.70%), Postives = 180/265 (67.92%), Query Frame = 2
Query:   26 AAAGSGRRGSVVMMAEQQQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKD--MALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPL-DA-GSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGAAQLTELKAFVGVYAKDEEIPFDDVIYLS 808
            A  G  R G+    AE+  D++ER   ++  +K   ++ P G+ R   + FP+ +PA  +  ADPV GD KD  + L RP +A+T L+ R ++CV+DA   GW+ A+FHR VDK+GP VVLART GGAVVGGY+PKGWVG  E R  ++AFLFTWPDGDTSKR +KLRK+G A +A  D+  +GP FG+EGL +PL DA  +   G ERVARCKLG YY+++PDG  S+FA GE    +L  L+AFVG+Y  DEEIPF D +  S
Sbjct:   43 AVVGKTRLGAEQQDAEEDLDVIERAMKWLGFKK---EKTPFGLARFDRDKFPELWPAELEEQADPVEGDEKDPDLQLIRPMMARTSLQTRPMECVFDAEVHGWKAASFHRCVDKRGPAVVLARTKGGAVVGGYSPKGWVGYGESRGSIAAFLFTWPDGDTSKRSIKLRKIGMASMASMDQPESGPRFGAEGLTIPLLDARATEYDGTERVARCKLGTYYDKLPDGSKSLFAHGEGLLTELVSLRAFVGIYGSDEEIPFLDALPFS 304          
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: R7QPM3_CHOCR (TLDc domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPM3_CHOCR)

HSP 1 Score: 259 bits (661), Expect = 1.840e-81
Identity = 137/248 (55.24%), Postives = 167/248 (67.34%), Query Frame = 2
Query:   77 QQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLD---AGSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGAAQ-LTELKAFVGVYAKDEEIPFDDVIYLS 808
            + DIVER +  +FG K  +   P G+KR   + FP+ YPAT D +ADPV  DT +MALFRP LA+T L+ R+++ +YDA RDGW    FH  +++KG  VV+A TAG AV GGYNPKG+VG  E R   +AFLFTWPDGDTSK  VKLRKVGGA LA  D   TGP FG++ L VPL    A  G    +R+A  KLG+YYER PDGGN++FA GE    + L ELK F GVYA  EEIPFDD +  S
Sbjct:   63 EMDIVERVYTAIFGAKQAE---PFGLKRFDRDRFPELYPATLDEFADPVPADTPEMALFRPLLARTQLQTREIQLLYDANRDGWSADTFHEALNRKGASVVMASTAG-AVFGGYNPKGFVGYGESRGSKAAFLFTWPDGDTSKPAVKLRKVGGAALAVVDEPETGPKFGADSLVVPLRPPRANWGESQKDRIAYSKLGSYYERRPDGGNTLFANGENPKGEVLQELKVFAGVYADGEEIPFDDALPFS 306          
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: L1IZU1_GUITC (TLDc domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IZU1_GUITC)

HSP 1 Score: 249 bits (635), Expect = 3.630e-79
Identity = 120/188 (63.83%), Postives = 141/188 (75.00%), Query Frame = 2
Query:  242 MALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDA--GSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGAAQLTELKAFVGVYAKDEEIPFDDVI 799
            M  FRP LA+T LEKR LK V+DA RDGW P+AFH  VDK GPGVVLART  GAVVGGYNPKGWVG  EYR  ++AFLF WPDGDTS+  +KLRKVGGAGLAC D   +GP FG++G  VPL+A    G  G ER+ARCKLG YYE+ PDG N++F   EK  A LT+LK +VG+Y  DEEIP++D +
Sbjct:    1 MQQFRPLLARTSLEKRDLKLVFDANRDGWTPSAFHLAVDKLGPGVVLARTEQGAVVGGYNPKGWVGYGEYRGSIAAFLFCWPDGDTSRPAIKLRKVGGAGLACIDDPESGPRFGADGFHVPLEAPRSEGEAGRERLARCKLGPYYEKRPDGSNTIFTKAEKATATLTDLKVYVGIYDADEEIPYNDAL 188          
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: A0A7S2ZTI4_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZTI4_9RHOD)

HSP 1 Score: 248 bits (633), Expect = 1.220e-77
Identity = 129/254 (50.79%), Postives = 170/254 (66.93%), Query Frame = 2
Query:   44 RRGSVVMMAEQQQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAG--SGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGAAQLTELKAFVGVYAKDEEIPFDDVI 799
            RR   V+M E+  D+ E+ FG +FG++   +E P+G +R   + FP+QY AT D +ADPVA DT++MALFRP LA+T L  R+L+ +YDA   GW  +AFH  V+KKG GVVLA T GG V GGYNPKGWVG  E R  L++FLFTWP GDTSK  +KLRKVGG  ++  D   TGP FG++GL V L +   +   G+E++A  KLG +YE  PDG   +F+  E    +L  L+A+ GVY + EEIPFDD +
Sbjct:   26 RRSRRVVMREK--DLGEKLFGLIFGKQ---EETPLGFQRFDRDRFPEQYEATLDEFADPVASDTEEMALFRPMLARTQLVTRELQLLYDAEEHGWTASAFHECVNKKGAGVVLAVTEGGTVCGGYNPKGWVGYGESRGSLASFLFTWPGGDTSKPAIKLRKVGGKSMSVLDDPETGPKFGADGLVVMLMSPFQTELDGSEKIASSKLGTFYEVRPDGVRHLFSKAEGKKTKLVSLRAYFGVYEEGEEIPFDDAV 274          
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: A0A7S1TFM7_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TFM7_9RHOD)

HSP 1 Score: 248 bits (633), Expect = 2.450e-77
Identity = 124/250 (49.60%), Postives = 167/250 (66.80%), Query Frame = 2
Query:   74 QQQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGS--GGGGAERVARCKLGAYYERMPDGGNSMFAPGE---KGAAQLTELKAFVGVYAKDEEIPFDDVIYLS 808
            +  D++E+ FG  FG+K   +E P+G+KR   + FP+Q+PA  D +A+ V GD+KD+ALFRP LA+T L +R L+ V+D   DGW   AFHR VD++G GVVL RT  G V GGYNPKGWVG  E R  +++FLFTWPDG+T+K  +K+RKVG A L+  D   TGP FG++ L +PL      G  G+E+ AR KLG+YYER+PDG N +F       KG   +  +K FVGVY + E+IPF+D +  S
Sbjct:   53 EDSDLLEKLFGVFFGKK---EENPLGLKRFDRDRFPEQFPAPLDEFAEAVQGDSKDVALFRPLLARTQLCRRSLRLVFDTDSDGWTAEAFHRAVDRQGAGVVLLRTVDGVVCGGYNPKGWVGYGESRGSVASFLFTWPDGNTNKPAMKMRKVGQAYLSVLDNPETGPQFGADSLVIPLQDTRLRGPDGSEKQARSKLGSYYERLPDGRNCLFPDSSHPRKGYCYVDSVKVFVGVYEEGEQIPFNDALPFS 299          
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Match: A0A7S4EVG5_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EVG5_CHRCT)

HSP 1 Score: 247 bits (631), Expect = 4.110e-76
Identity = 130/260 (50.00%), Postives = 166/260 (63.85%), Query Frame = 2
Query:   35 GSGRRGSVVMMAEQ----QQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGA-AQLTELKAFVGVYAKDEEIPFDDVI 799
            G+ +R SV  +A +    + D +E+ FG  FG     + A  G+ R    + PD YPATK  +ADPV GD ++  + RP L  T LE   L+  YDA RDGWR A FH  VDK GP +V+  T GGAV GGY PKG+ G  EYR  ++AFL+TWPDGDT + P+KL+K+GGAGLA  D   TGP FG+EGL +P+D GS     ER+AR KLG YYERMPDGG S+FA  +     +L EL+ +VGV+ + E IPFD  I
Sbjct:  116 GANKRHSVHPIANEDNKNEPDFIEKLFGVFFGAPQEGEVA--GLARTA--SAPDTYPATKTEFADPVEGDIEEATILRPLLKNTNLEYLPLRLAYDANRDGWRAADFHEKVDKTGPCIVVCETEGGAVCGGYAPKGFAGYGEYRGSIAAFLYTWPDGDTDRAPIKLQKMGGAGLATIDEPETGPRFGAEGLSIPMDPGS-----ERIARSKLGPYYERMPDGGGSIFAANDNSKRCELKELRVYVGVWPEGERIPFDGAI 366          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|88709 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YK91_9STRA1.960e-185100.00TLDc domain-containing protein n=1 Tax=Tribonema m... [more]
A0A6V1NAM7_HETAK1.370e-10160.16Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LBZ9_ECTSI1.330e-10061.11TLDc domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S0DY99_9CRYP4.100e-8758.40Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A5J4YZD4_PORPP1.340e-8351.70TLDc domain-containing protein n=1 Tax=Porphyridiu... [more]
R7QPM3_CHOCR1.840e-8155.24TLDc domain-containing protein n=1 Tax=Chondrus cr... [more]
L1IZU1_GUITC3.630e-7963.83TLDc domain-containing protein n=1 Tax=Guillardia ... [more]
A0A7S2ZTI4_9RHOD1.220e-7750.79Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S1TFM7_9RHOD2.450e-7749.60Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S4EVG5_CHRCT4.110e-7650.00Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_74contigContig_74:326686..330529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|88709|CE88708_65
DescriptionTLD
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2BGQI@1|root,2S19X@2759|Eukaryota
Evalue1.26e-102
Seed ortholog2880.D8LBZ9
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_003910.1
TranscriptId89031
TrackFilteredModels1
ProteinId88709
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|88709gene_10543Tribonema minus UTEX_B_3156 geneContig_74 326686..330529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|88709Trimin1|88709|CE88708_65Tribonema minus UTEX_B_3156 polypeptideContig_74 326747..330328 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10543_1exon_10543_1Tribonema minus UTEX_B_3156 exonContig_74 326686..326790 +
exon_10543_2exon_10543_2Tribonema minus UTEX_B_3156 exonContig_74 327902..328003 +
exon_10543_3exon_10543_3Tribonema minus UTEX_B_3156 exonContig_74 328647..328737 +
exon_10543_4exon_10543_4Tribonema minus UTEX_B_3156 exonContig_74 329319..329750 +
exon_10543_5exon_10543_5Tribonema minus UTEX_B_3156 exonContig_74 330242..330529 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10543UTR5_10543Tribonema minus UTEX_B_3156 five_prime_UTRContig_74 326686..326746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10543CDS_10543Tribonema minus UTEX_B_3156 CDSContig_74 326747..326790 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10543UTR3_10543Tribonema minus UTEX_B_3156 three_prime_UTRContig_74 330329..330529 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10543 ID=mRNA_10543|Name=jgi.p|Trimin1|88709|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1018bp|location=Sequence derived from alignment at Contig_74:326686..330529+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTTCACACAGCGGAGACAGGCTGGCGCAGCAGCAGGATCTGGCAGGCGAG
GCTCCGTTGTCATGATGGCCGAGCAACAGCAGGACATTGTCGAGCGGTTC
TTCGGGTTTGTGTTCGGCCAGAAAGCGCTGGACGACGAGGCGCCGATGGG
CATGAAGCGCATGACCATTGAGAACTTCCCCGACCAGTACCCTGCCACCA
AGGACAGGTGGGCAGACCCTGTGGCCGGCGACACCAAGGACATGGCGCTT
TTCCGACCGGCGCTGGCGCAGACGATGCTTGAGAAGCGGAAACTCAAGTG
CGTCTACGACGCGGCGCGCGACGGCTGGCGCCCCGCCGCCTTCCACCGCG
GCGTCGACAAGAAGGGCCCCGGCGTCGTGCTCGCACGCACCGCGGGCGGC
GCGGTCGTCGGCGGCTACAACCCCAAGGGCTGGGTCGGCGAGTCAGAGTA
CCGCCCGGGCCTGTCCGCGTTCCTCTTCACGTGGCCGGACGGCGACACGA
GCAAGCGCCCCGTCAAGCTGCGCAAGGTCGGCGGGGCGGGGCTCGCGTGC
TACGACCGCGCGAGCACGGGGCCGTTCTTCGGCAGCGAGGGGCTGTGCGT
GCCGCTGGACGCGGGGAGCGGCGGCGGCGGCGCGGAGCGCGTCGCGCGCT
GCAAGCTCGGCGCGTACTACGAGCGCATGCCGGACGGCGGCAACAGCATG
TTCGCGCCGGGGGAGAAGGGGGCCGCGCAGTTGACTGAGCTCAAGGCTTT
CGTGGGCGTTTATGCCAAGGATGAGGAGATCCCCTTTGATGACGTGATTT
ACCTGTCATTCACATAGGCCAGCACTACACACAGGGGCAATAATGAGTGA
GTTCTTAATGCAAGTCTTAGGTTTGTGCAGTACCATATTACAGTCAAACA
CGCTTCAAGTAGAGAGCACAAGACATCAACATCCCAGCTCAATGCACACA
GCATGGCTTATAGTCCGGCCAACGTGGCCTAACGCATCAGATGATTGAGC
ATTTAATAGAAGTATGTA
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protein sequence of jgi.p|Trimin1|88709

>Trimin1|88709|CE88708_65 ID=Trimin1|88709|CE88708_65|Name=jgi.p|Trimin1|88709|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=252bp
MMAEQQQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRW
ADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDK
KGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRP
VKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGSGGGGAERVARCKLG
AYYERMPDGGNSMFAPGEKGAAQLTELKAFVGVYAKDEEIPFDDVIYLSF
T*
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mRNA from alignment at Contig_74:326686..330529+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10543 ID=mRNA_10543|Name=jgi.p|Trimin1|88709|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3844bp|location=Sequence derived from alignment at Contig_74:326686..330529+ (Tribonema minus UTEX_B_3156 )
GTTCACACAGCGGAGACAGGCTGGCGCAGCAGCAGGATCTGGCAGGCGAG GCTCCGTTGTCATGATGGCCGAGCAACAGCAGGACATTGTCGAGCGGTTC TTCGGGTGAGCCATTCGAAGAGAGCAGTTTCTGCTGCTGCTGCTGCAGAT GGATGCACGCCAGATTTAAGAGAGATTGGCTCATGCTTTGCCCTGGTCGA GTAGTCCTGTACTTGAGCAGTGCAAGTTTCAAACACTCAGCAAAATGGGG TGTGTGCTGAGGAATGTGGTGTGGGTGAGTTTGTCAAAATAAACTTCGTG GGCGTCCTGAGTAGCTGGGCCTATCACAACAGCAGCAGCAGTGGAACTGA GACAGGTCATCAAGTTGTTGCAGTAATTGTGCATCCTATCTGCTGATGGT TTGTATTCTGGTGAGCGCACTTAACCTACCCAGCACTTGCGCACCCATGA GCAACACTGCCCATGGAGCAGAGTGCCCAGTGTGCACATCGATTCGACTG CCAGACACAAACGTACAGGGTAGCTGTCGACGTCAATCCGAGAGCAGGGA ACATTGTGTCTGTTGCAGTTGATTTTCACGACTCACTCTACACCACACAC GGCCACTAGAGCCACGCTGCTCAACTGTCGTCATCCACACTGAGCTCGTT GTTGCAGCTGTTTCAAAACAACTGCAGACGCCTCTGTGGCATTTGCGTTT CAAGGCACCGCCGCCCACAAACCCTCTGAGATGTGACTCGGTGTGCCAAC AGGCACATGAGGTGCGCATTGCAGCTGTATGAATATCTAGTGTGTTGACT TCCTGGCTGAATGACCGTTCCGCTCAGCTGTAACACACTGTCAGCGGCCT GCGCGTGCTGCACAACAAATTCAGTAGTCATACGTGTTGCCCTCATTACT TTGTGTCTAATGCGTGTGTCGACATCCTTGAGTTTTGTATGAAGAGAAGC TGTGTTATTGTGCGCAACCTGGCAGGTTATGTGTTGCAACCTGTCGATCG GGGAAAAGCCATGCGGGTCGCCCTTCGTTATTGATGCCATGACTGGGCTG TAACCTTCTAGAACTTCAGCTGTATCGCCACAGGCAGCATGCCTATGCCG CGTGCGGCATTGTCTGCAACGAGTGCTGCTGCATACTAGTAGCATACGTT CAGCAGTAGCAAGTCGTCACCAGAATGCTCCTTTTGTTTCTGGCGCTGCC CTCGTGACATGCTCAGGTTTGTGTTCGGCCAGAAAGCGCTGGACGACGAG GCGCCGATGGGCATGAAGCGCATGACCATTGAGAACTTCCCCGACCAGTA CCCTGCCACCAAGGACAGGTGCGAACCTCGCCTCATGCATAACACATCTA AGTAGAAGCAGCGGTGAATTTGTGGAGCCACAGTGCGCTTGCTAATGTGA ACTTGTGGTGCAGTTAAGTCGTGGACTTTACTGGGTGCGGCACTGATGCA TGAAGTGGCCCGCAATCCCTGGCAGCGCTCATCACATTGTTATCGCCAGA TCGGCGGGCATGTACCACGACATGTGACGCGCTGTGTGGTACAAAACATG TTCCACTCTCGTTCACATTGCCTTTGCGTGTCGTGCAAATCTGAGAGCGC CATTCAAGCTTTGCTGCAGGGTCTGCCACAGCCATCTTTCCGTACGTGGT GTTGTGCCGTGCTCGGGGTACCCTTCAGGATTGGTTGAGAGTTGTACGCG TCAACTCGCCTGCGCTCATGCCTGATGTATGGGGCGTGCGCGCAGTACTA CTGCGCTCACTCTATCTGCTGCGTGCTTCGCCACAGCATTTCTGTAGCAT GTGTCACCCGCACTCTGTCGAGGTGGCCTCAGCAATGTTCACTCCTGTGC TCTGCGCAGCAGGCAGCTATCTAGTCGTAAACTGCGCAAACAAACATATG ATGTTCCTACCCACAGCTCATGTTGTGCGCCCTCTCGTGCATGCCGTCCG CGCTTGTGAAGGTGGGCAGACCCTGTGGCCGGCGACACCAAGGACATGGC GCTTTTCCGACCGGCGCTGGCGCAGACGATGCTTGAGAAGCGGAAACTCA AGGCAAGCGACCCTTGCGGCATTGCAGATGTTAGCACGGTAGATACTGGA ATGATAAAGACGCAGTCATCATCGTGGCTTGTTGTGGCGCTTTCTGTGTG GTCAGCAGTGCCCAGCAACGCTCCTTTCCATCATCAACATCCATCTGATG CAAGTGACTGATAGCATCAACAGGATGTCTTGTTGCCGGCTCGTGCTCGA GCAGGGCGCGCCGCCAAGTTCGTCACATCAGAGATGCGTACATAAATACC AATGCGACCGACGTCCATGACCGTGCACTGCAGCCGCAGCTCCTGAATCC AGGTATGCCTCACCTGCATGCGCCACACGTCACTCATTACATTCACACAA GTCGACCACGAAGGAGCGGCAGCACACTCACAGCGCCCGTGCAGATCCTC CATTAGCACCATACGGCCGCAGCGCAGCAGCCTCGGCGAGTCGCGTACAT GGCATCTCTCACCCGCCCCCTTCCCCCCCCCCCCCCGGTGTGTCACGTAC GTGGCATCCCTGAACCAGCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCC CGCCCCCCCCCCCCGCTATTCCCCCCCCTGCAGTGCGTCTACGACGCGGC GCGCGACGGCTGGCGCCCCGCCGCCTTCCACCGCGGCGTCGACAAGAAGG GCCCCGGCGTCGTGCTCGCACGCACCGCGGGCGGCGCGGTCGTCGGCGGC TACAACCCCAAGGGCTGGGTCGGCGAGTCAGAGTACCGCCCGGGCCTGTC CGCGTTCCTCTTCACGTGGCCGGACGGCGACACGAGCAAGCGCCCCGTCA AGCTGCGCAAGGTCGGCGGGGCGGGGCTCGCGTGCTACGACCGCGCGAGC ACGGGGCCGTTCTTCGGCAGCGAGGGGCTGTGCGTGCCGCTGGACGCGGG GAGCGGCGGCGGCGGCGCGGAGCGCGTCGCGCGCTGCAAGCTCGGCGCGT ACTACGAGCGCATGCCGGACGGCGGCAACAGCATGTTCGCGCCGGGGGAG AAGGGGGCCGCGCAGGTACTTGAACGTGTGTAGGTATGCTCTTGCGCGTG TGATGCTGTGAGGGCAGTGCTCAGGGGCTATGTACATACTTTTTAGTACG TATACTCCTGAAGTATATGCGTCTTGCTCAGCTGCTGCATTGCGTTGCCG TGCTTCGGCGAACCGCGAGCGCACGGCGCGGGCATGGATGCTCAACACTC TGGCGCATGGACTGCGCTGAGGCTTGCGGAGCGCGTTGGGCCAGCGGCGG CAGTGGCTCATTGCGTGCGGGGCATTCAGCGCACACAGTATTGTCTGCAA CGACATGCGGTTGCTGTAGGCGTTGCGGGCATCAGCGACGTTACGGGATT CGTGTTGCCAGTTGGGGGCTGCATGTGACGGTGTTGGCCTCCGTCTGTAT CAGCAACAGCTGCCAGTGCAGGCAGGCACCCATGACCCCATCTGTTGCTG TACACCTGACCACCGTGATGGCGTGTTGCTGCCTGATTGCTGTTTGTCGC TCTCAGTTGACTGAGCTCAAGGCTTTCGTGGGCGTTTATGCCAAGGATGA GGAGATCCCCTTTGATGACGTGATTTACCTGTCATTCACATAGGCCAGCA CTACACACAGGGGCAATAATGAGTGAGTTCTTAATGCAAGTCTTAGGTTT GTGCAGTACCATATTACAGTCAAACACGCTTCAAGTAGAGAGCACAAGAC ATCAACATCCCAGCTCAATGCACACAGCATGGCTTATAGTCCGGCCAACG TGGCCTAACGCATCAGATGATTGAGCATTTAATAGAAGTATGTA
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Coding sequence (CDS) from alignment at Contig_74:326686..330529+

>mRNA_10543 ID=mRNA_10543|Name=jgi.p|Trimin1|88709|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=756bp|location=Sequence derived from alignment at Contig_74:326686..330529+ (Tribonema minus UTEX_B_3156 )
ATGATGGCCGAGCAACAGCAGGACATTGTCGAGCGGTTCTTCGGGTTTGT
GTTCGGCCAGAAAGCGCTGGACGACGAGGCGCCGATGGGCATGAAGCGCA
TGACCATTGAGAACTTCCCCGACCAGTACCCTGCCACCAAGGACAGGTGG
GCAGACCCTGTGGCCGGCGACACCAAGGACATGGCGCTTTTCCGACCGGC
GCTGGCGCAGACGATGCTTGAGAAGCGGAAACTCAAGTGCGTCTACGACG
CGGCGCGCGACGGCTGGCGCCCCGCCGCCTTCCACCGCGGCGTCGACAAG
AAGGGCCCCGGCGTCGTGCTCGCACGCACCGCGGGCGGCGCGGTCGTCGG
CGGCTACAACCCCAAGGGCTGGGTCGGCGAGTCAGAGTACCGCCCGGGCC
TGTCCGCGTTCCTCTTCACGTGGCCGGACGGCGACACGAGCAAGCGCCCC
GTCAAGCTGCGCAAGGTCGGCGGGGCGGGGCTCGCGTGCTACGACCGCGC
GAGCACGGGGCCGTTCTTCGGCAGCGAGGGGCTGTGCGTGCCGCTGGACG
CGGGGAGCGGCGGCGGCGGCGCGGAGCGCGTCGCGCGCTGCAAGCTCGGC
GCGTACTACGAGCGCATGCCGGACGGCGGCAACAGCATGTTCGCGCCGGG
GGAGAAGGGGGCCGCGCAGTTGACTGAGCTCAAGGCTTTCGTGGGCGTTT
ATGCCAAGGATGAGGAGATCCCCTTTGATGACGTGATTTACCTGTCATTC
ACATAG
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