mRNA_10491 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154108
Unique NamemRNA_10491
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|154108 vs. uniprot
Match: A0A835YR22_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR22_9STRA)

HSP 1 Score: 165 bits (418), Expect = 3.310e-47
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 1 
Query:    1 CIAHGGGNRCQYIDHLTGAHAITRQYVXXXXXXXXXXXXXXXXATCESSARTSKTGTGAPGRCKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSAMSGKTGTXXXXXXXXXXXXXXXXXQYIDASTGATCSSSTQSSKTXXXXXXXXXXXXXXXXXHSAKTXXXXXXXXXXXXXXXXXXXXQYIDAATGAICDSSAVXXXXXXXXXXXXXXXXXXXXXEMQCC 720
            CIAHGGGNRCQYIDHLTGAHAITRQYVXXXXXXXXXXXXXXXXATCESSARTSKTGTGAPGRCKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSAMSGKTGTXXXXXXXXXXXXXXXXXQYIDASTGATCSSSTQSSKTXXXXXXXXXXXXXXXXXHSAKTXXXXXXXXXXXXXXXXXXXXQYIDAATGAICDSSAVXXXXXXXXXXXXXXXXXXXXXEMQCC
Sbjct:    1 CIAHGGGNRCQYIDHLTGAHAITRQYVXXXXXXXXXXXXXXXXATCESSARTSKTGTGAPGRCKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSAMSGKTGTXXXXXXXXXXXXXXXXXQYIDASTGATCSSSTQSSKTXXXXXXXXXXXXXXXXXHSAKTXXXXXXXXXXXXXXXXXXXXQYIDAATGAICDSSAVXXXXXXXXXXXXXXXXXXXXXEMQCC 240
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154108 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YR22_9STRA3.310e-47100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_49contigContig_49:782426..783618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154108|gw1.49.147.1
Hectar predicted targeting categoryother localisation
TranscriptId154430
TrackFilteredModels1
ProteinId154108
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154108gene_10491Tribonema minus UTEX_B_3156 geneContig_49 782426..783618 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10491_1exon_10491_1Tribonema minus UTEX_B_3156 exonContig_49 782426..782499 +
exon_10491_2exon_10491_2Tribonema minus UTEX_B_3156 exonContig_49 782554..782808 +
exon_10491_3exon_10491_3Tribonema minus UTEX_B_3156 exonContig_49 782964..783155 +
exon_10491_4exon_10491_4Tribonema minus UTEX_B_3156 exonContig_49 783420..783618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10491CDS_10491Tribonema minus UTEX_B_3156 CDSContig_49 782426..782499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154108Trimin1|154108|gw1.49.147.1Tribonema minus UTEX_B_3156 polypeptideContig_49 782426..783618 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10491 ID=mRNA_10491|Name=jgi.p|Trimin1|154108|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=720bp|location=Sequence derived from alignment at Contig_49:782426..783618+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCATCGCTCACGGAGGCGGCAACCGGTGCCAGTACATAGACCATCTAAC
CGGCGCACATGCGATAACTCGGCAGTACGTTGCTCACGGAGGCGGCGACC
GGTGCCAGTACATAGATGCTGCCACCGGCGCCACATGTGAAAGCAGCGCC
AGAACCAGCAAGACTGGCACTGGGGCACCCGGCAGGTGCAAGCTGCACGG
AGGTGGCGACCGGTGCCAGTACATAGACCATCTAACCGGCGCCAGGTGCG
GAATCAGCGCCAGAACCAGCAAGACTGGTAGCGGGGCACCCGACAGGTGC
GTTTCTCACGGAGGTGGCAACCGGTGCCACTCGGCAATGTCTGGCAAGAC
TGGCACTGCCAGTGGGGCACCCGACAGGTGCGTTGCTCACGGAGGTGGCG
ACCGGTGCCAGTACATAGATGCTTCCACAGGTGCCACATGCAGCAGCTCG
ACACAGAGCAGCAAGACTGGCACTGGGGCACCCAACAGGTGCGTTGCTCA
CGGAGGTGGCGACCGGTGCCACAGCGCCAAAACCAGCAAGACTGGCACTG
GGGCACTCGACAGGTGCAAGCTGCACGGAGGTGGCGACCGGTGCCAGTAC
ATAGATGCTGCCACTGGCGCCATATGCGATAGCTCGGCAGTGTCTAGCAA
GACTGGCACTGGGGCACCCGACAGGTGCGTTGCTCACGGAGGCGGCGACC
GGTGCGAGATGCAGTGCTGC
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protein sequence of jgi.p|Trimin1|154108

>Trimin1|154108|gw1.49.147.1 ID=Trimin1|154108|gw1.49.147.1|Name=jgi.p|Trimin1|154108|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=240bp
CIAHGGGNRCQYIDHLTGAHAITRQYVAHGGGDRCQYIDAATGATCESSA
RTSKTGTGAPGRCKLHGGGDRCQYIDHLTGARCGISARTSKTGSGAPDRC
VSHGGGNRCHSAMSGKTGTASGAPDRCVAHGGGDRCQYIDASTGATCSSS
TQSSKTGTGAPNRCVAHGGGDRCHSAKTSKTGTGALDRCKLHGGGDRCQY
IDAATGAICDSSAVSSKTGTGAPDRCVAHGGGDRCEMQCC
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mRNA from alignment at Contig_49:782426..783618+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10491 ID=mRNA_10491|Name=jgi.p|Trimin1|154108|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1193bp|location=Sequence derived from alignment at Contig_49:782426..783618+ (Tribonema minus UTEX_B_3156 )
TGCATCGCTCACGGAGGCGGCAACCGGTGCCAGTACATAGACCATCTAAC
CGGCGCACATGCGATAACTCGGCAGTGTCTAGAAAGACTGGCACTGGGGC
ACCCGACTGGCACTGGGGCACCCGACAGGTACGTTGCTCACGGAGGCGGC
GACCGGTGCCAGTACATAGATGCTGCCACCGGCGCCACATGTGAAAGCAG
CGCCAGAACCAGCAAGACTGGCACTGGGGCACCCGGCAGGTGCAAGCTGC
ACGGAGGTGGCGACCGGTGCCAGTACATAGACCATCTAACCGGCGCCAGG
TGCGGAATCAGCGCCAGAACCAGCAAGACTGGTAGCGGGGCACCCGACAG
GTGCGTTTCTCACGGAGGTGGCAACCGGTGCCAGTACATAGATGCTTCCA
CAGGTGCCACATGCAGCAGCTCGACACAGAGCAGCAAGACTGGCACTGGG
GCACCCGACAGGTGCGTTGCTCACGGAGGTGGCGACCGGTGCCAGTACAT
AGAAGCAGCTTCCAAAGGTGCCACATGCAGTGCGATAGCTCGGCAATGTC
TGGCAAGACTGGCACTGCCAGTGGGGCACCCGACAGGTGCGTTGCTCACG
GAGGTGGCGACCGGTGCCAGTACATAGATGCTTCCACAGGTGCCACATGC
AGCAGCTCGACACAGAGCAGCAAGACTGGCACTGGGGCACCCAACAGGTG
CGTTGCTCACGGAGGTGGCGACCGGTGCCAGTTTATAGATGGTTCCACAG
GTGCCACATGCAATAGCTCGGCAGTGTCTAGCAAGACTGGCACTGGGGCA
CCTGACAGGTGCGTTGCTCACGGAGGAGGCGACGGTCACCGGTGCCAGTA
CATAGATGCTTCCACCGGGTCCAAGTGCGGCACCTCGGCAGTGTCCAGCA
AGACTGGTAGCGGGGCACACGAAAGGTGCATCGCTCACGGAGGTGGCGAC
CGGTGCCAGTACATAGACCATCTAACCGGCGCCAGGTGCGGCAGCAGCGC
CAAAACCAGCAAGACTGGCACTGGGGCACTCGACAGGTGCAAGCTGCACG
GAGGTGGCGACCGGTGCCAGTACATAGATGCTGCCACTGGCGCCATATGC
GATAGCTCGGCAGTGTCTAGCAAGACTGGCACTGGGGCACCCGACAGGTG
CGTTGCTCACGGAGGCGGCGACCGGTGCGAGATGCAGTGCTGC
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Coding sequence (CDS) from alignment at Contig_49:782426..783618+

>mRNA_10491 ID=mRNA_10491|Name=jgi.p|Trimin1|154108|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=720bp|location=Sequence derived from alignment at Contig_49:782426..783618+ (Tribonema minus UTEX_B_3156 )
TGCATCGCTCACGGAGGCGGCAACCGGTGCCAGTACATAGACCATCTAAC
CGGCGCACATGCGATAACTCGGCAGTACGTTGCTCACGGAGGCGGCGACC
GGTGCCAGTACATAGATGCTGCCACCGGCGCCACATGTGAAAGCAGCGCC
AGAACCAGCAAGACTGGCACTGGGGCACCCGGCAGGTGCAAGCTGCACGG
AGGTGGCGACCGGTGCCAGTACATAGACCATCTAACCGGCGCCAGGTGCG
GAATCAGCGCCAGAACCAGCAAGACTGGTAGCGGGGCACCCGACAGGTGC
GTTTCTCACGGAGGTGGCAACCGGTGCCACTCGGCAATGTCTGGCAAGAC
TGGCACTGCCAGTGGGGCACCCGACAGGTGCGTTGCTCACGGAGGTGGCG
ACCGGTGCCAGTACATAGATGCTTCCACAGGTGCCACATGCAGCAGCTCG
ACACAGAGCAGCAAGACTGGCACTGGGGCACCCAACAGGTGCGTTGCTCA
CGGAGGTGGCGACCGGTGCCACAGCGCCAAAACCAGCAAGACTGGCACTG
GGGCACTCGACAGGTGCAAGCTGCACGGAGGTGGCGACCGGTGCCAGTAC
ATAGATGCTGCCACTGGCGCCATATGCGATAGCTCGGCAGTGTCTAGCAA
GACTGGCACTGGGGCACCCGACAGGTGCGTTGCTCACGGAGGCGGCGACC
GGTGCGAGATGCAGTGCTGC
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