mRNA_10476 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|71705
Unique Name	mRNA_10476
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|71705 vs. uniprot
Match: A0A835Z0I4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I4_9STRA)

HSP 1 Score: 639 bits (1648), Expect = 1.070e-230
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 1

Query:   10 MAAAAALIAVVSCCVTCAEAFTFQHGSLSHRGFDYARSRSVPQATSTEERGVAARRVVCMGAADGGITRREVLTGAAAVAVGVSLASYPEPAEASLVMSPPLRLNNRYFLMRSGQSFADAAGQIQTHPIYKLHMSNGLTELGRRQAEKAAESLSGLGAGQDNRGVIIYHDISARCLETANVLCDCMEIGRERVVPEYAFLEPRGMGLWESGNVTAILPALYRADAQDPTWRPPPNDDGTLSESVLDVLVRGRQLMSKLETQFSAEDIVLVSPDSDNLSILQAFVLGEEFFAKHSKFFFRAGEMRPLLLSEKTQTRYEPVYYAKVKAAADA 999
            MAAAAALIAVVSCCVTCAEAFTFQHGSLSHRGFDYARSRSVPQATSTEERGVAARRVVCMGAADGGITRREVLTGAAAVAVGVSLASYPEPAEASLVMSPPLRLNNRYFLMRSGQSFADAAGQIQTHPIYKLHMSNGLTELGRRQAEKAAESLSGLGAGQDNRGVIIYHDISARCLETANVLCDCMEIGRERVVPEYAFLEPRGMGLWESGNVTAILPALYRADAQDPTWRPPPNDDGTLSESVLDVLVRGRQLMSKLETQFSAEDIVLVSPDSDNLSILQAFVLGEEFFAKHSKFFFRAGEMRPLLLSEKTQTRYEPVYYAKVKAAADA
Sbjct:    1 MAAAAALIAVVSCCVTCAEAFTFQHGSLSHRGFDYARSRSVPQATSTEERGVAARRVVCMGAADGGITRREVLTGAAAVAVGVSLASYPEPAEASLVMSPPLRLNNRYFLMRSGQSFADAAGQIQTHPIYKLHMSNGLTELGRRQAEKAAESLSGLGAGQDNRGVIIYHDISARCLETANVLCDCMEIGRERVVPEYAFLEPRGMGLWESGNVTAILPALYRADAQDPTWRPPPNDDGTLSESVLDVLVRGRQLMSKLETQFSAEDIVLVSPDSDNLSILQAFVLGEEFFAKHSKFFFRAGEMRPLLLSEKTQTRYEPVYYAKVKAAADA 330

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BLAST of jgi.p|Trimin1|71705 vs. uniprot
Match: A0A6H5JV72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV72_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 1.390e-58
Identity = 106/210 (50.48%), Postives = 140/210 (66.67%), Query Frame = 1

Query:  340 MRSGQSFADAAGQIQTHPIYKLHMSNGLTELGRRQAEKAAESLSGLGAGQDNRGVIIYHDISARCLETANVLCDCMEIGRERVVPEYAFLEPRGMGLWESGNVTAILPA----LYRADAQDPTWRPPPNDDGTLSESVLDVLVRGRQLMSKLETQFSAEDIVLVSPDSDNLSILQAFVLGEEFFAKHSKFFFRAGEMRPLLLSEKTQTRY 957
            MRSGQ  +D  G +Q+HPI KLH+ N LT+ G  + ++AA  L  LG         I+ DIS   ++TA +L   + I +ERV+PEYAFLEPRGMG+++   V  +LP     +Y  DA   TWRPPPN DGT +ESV DV VR RQL+SKLETQ+  ED+++V+PDSD LS+LQ+FVLGE+   KHSK++ R GE R L +S  T+  Y
Sbjct:    1 MRSGQGGSDKEGVVQSHPIDKLHVDNRLTDQGVEETQRAAGVLRALGVAD----AFIWADISRVDMDTARILAQELGIRQERVIPEYAFLEPRGMGIFDGKEVATVLPEAEGKVYEKDAVSLTWRPPPNTDGTPNESVDDVFVRVRQLLSKLETQYQGEDVIIVAPDSDCLSVLQSFVLGEDM-GKHSKYYLRPGEGRQLRVSLDTEVGY 205

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BLAST of jgi.p|Trimin1|71705 vs. uniprot
Match: K3XKJ8_SETIT (Uncharacterized protein n=12 Tax=Panicoideae TaxID=147369 RepID=K3XKJ8_SETIT)

HSP 1 Score: 184 bits (468), Expect = 2.190e-52
Identity = 108/240 (45.00%), Postives = 154/240 (64.17%), Query Frame = 1

Query:  214 RREVLTGAAAVAVGVS-LASYPEPAEA-SLVMSPPLRLNNRYFLMRSGQSFADAAGQIQTHPIYKLHMSNGLTELGRRQAEKAAESLSGLGAGQDNRGVIIYHDISARCLETANVLCDCMEIGRERVVPEYAFLEPRGMGLWESGNVTAILPALYRADAQDPTWRPPPNDDGTLSESVLDVLVRGRQLMSKLETQFSAEDIVLVSPDSDNLSILQAFVLGEEFFAKHSKFFFRAGEMRPL 927
            RR++L   AA+++ ++  A+ P PA A  L   PP  L NRYFL+R+G+S  +  G ++T+P+ K  + NGL+ +G RQ  +AA  L  LGA +D+    I+  I+ R  + A ++     I R R+VPEY+FL+ RG+G +E G     LP +Y +D   P  +PPP  DGT +ESV DV VR  QLMS LETQ+S E +V+VSPDSDNLSILQA ++G +   +HS  FF+ GE+RP+
Sbjct:   35 RRDLLLLPAALSLQLAPSAAAPAPAAARGLFRMPPAALANRYFLVRAGESVYEGQGLLRTNPVAKTSVDNGLSPVGLRQTARAALELQRLGACEDD--CWIWPSITQRAYQAAEIIAAANGINRSRIVPEYSFLDARGLGAFE-GKSLDTLPEVYASDNISPDMKPPPISDGTPNESVADVFVRVTQLMSILETQYSGETVVIVSPDSDNLSILQAGLIGLDLL-RHSSLFFKPGEVRPV 270

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BLAST of jgi.p|Trimin1|71705 vs. uniprot
Match: A0A835YJD9_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YJD9_9CHLO)

HSP 1 Score: 184 bits (468), Expect = 2.590e-52
Identity = 105/250 (42.00%), Postives = 157/250 (62.80%), Query Frame = 1

Query:  205 GITRREVLTGAAAVAVGVSLASYP-----EPAEASLVMSPPLRLNNRYFLMRSGQSFADAAGQIQTHPIYKLHMSNGLTELGRRQAEKAA-ESLSGLGAGQDNRGVIIYHDISARCLETANVLCDCMEIGRERVVPEYAFLEPRGMGLWESGNVTAILPALYRADAQDPTWRPPPNDDGTLSESVLDVLVRGRQLMSKLETQFSAEDIVLVSPDSDNLSILQAFVLGEEFFAKHSKFFFRAGEMRPLLLS 936
            G +RR +L G   + +G+SL          P+ ASLV  P   LNNRYFL+R+G+S+A++ G+  T+P++K    +GL+E G+ Q  +     LS LG+ +D     ++  I+    +TA V+   + +GR R+VPEY+FL+ RG+G  E   +   L A+   D+ D  WRPP  +DGT  ES  DVLVR RQ+MS  ETQ+S +D++++SPDSD LS+LQA VLG +   +H ++ FR+GE+RPL L+
Sbjct:    6 GSSRRSLLLG---LGLGLSLTGLEVALPIPPSHASLVRFPADVLNNRYFLVRAGESYAESFGEPLTNPVWKTSERHGLSEFGKEQVLRGIIPELSKLGSCEDG-SCWLWPSITQNSYQTAEVVAYVLGVGRSRIVPEYSFLDARGLGALERVRLDTALEAIAEGDSLDSNWRPPKGEDGTPHESAQDVLVRMRQMMSITETQYSGDDVIIISPDSDCLSVLQAAVLGVDL-RQHRRYAFRSGEVRPLQLA 250

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BLAST of jgi.p|Trimin1|71705 vs. uniprot
Match: A0A1Y1ILS9_KLENI (Histidine phosphatase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ILS9_KLENI)

HSP 1 Score: 184 bits (466), Expect = 3.090e-52
Identity = 108/247 (43.72%), Postives = 154/247 (62.35%), Query Frame = 1

Query:  217 REVLTGAAAVAVGVSLASYPEPAEAS-LVMSPPLRLNNRYFLMRSGQSFADAAGQIQTHPIYKLHMSNGLTELGRRQAEKAAESLSGLGAGQDNRGVIIYHDISARCLETANVLCDCMEIGRERVVPEYAFLEPRGMGLWESGNVTAILPALYRADAQDPTWRPPPNDDGTLSESVLDVLVRGRQLMSKLETQFSAEDIVLVSPDSDNLSILQAFVLGEEFFAKHSKFFFRAGEMRPLLLSEKTQTR 954
            R +L GA A A G     + E A A+ L++ PP +L N YFL+R+G+S  +  G I T+P+ K  M +GL++LGR+Q     + L  LGA   N    I+  I+ R  +TA ++     +GR R+VPEY+FL+ RG+G +E G   A +  +Y +D +   +RPP   DGT +ESV DVLVR RQLMS LETQ+  + +V+VSPDSDNLS+LQA +LG +   +HS   FR GE+R ++LS +   R
Sbjct:   25 RALLLGAGACAAG----EWEESAAATGLILLPPAKLTNEYFLVRAGESEVETQGFIMTNPVAKTSMDSGLSKLGRQQVLSTIQQLQDLGACTAN--CWIWPSITQRAYQTAELVASAFTVGRSRIVPEYSFLDARGLGSYE-GRSLAQIQEVYESDRESAFYRPPAFVDGTPNESVNDVLVRVRQLMSILETQYQGDQVVIVSPDSDNLSVLQAALLGLDL-RQHSSLAFRPGEVRKVVLSGEAPPR 263

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BLAST of jgi.p|Trimin1|71705 vs. uniprot
Match: A0A061RZ05_9CHLO (Phosphoglycerate bisphosphoglycerate mutase family protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZ05_9CHLO)

HSP 1 Score: 184 bits (466), Expect = 1.640e-51
Identity = 101/223 (45.29%), Postives = 142/223 (63.68%), Query Frame = 1

Query:  268 SYPEPAEASLVMSPPLRLNNRYFLMRSGQSFADAAGQIQTHPIYKLHMSNGLTELGRRQA-EKAAESLSGLGAGQDNRGVIIYHDISARCLETANVLCDCMEIGRERVVPEYAFLEPRGMGLWESGNVTAILPALYRADAQDPTWRPPPNDDGTLSESVLDVLVRGRQLMSKLETQFSAEDIVLVSPDSDNLSILQAFVLGEEFFAKHSKFFFRAGEMRPLLL 933
            S P   +A+LV  P   L+NRYFL+R+G+   +A  ++ T+P+ K  + +GL+E G+RQ  +  A SL   G G       ++  ++ R  +TA +L    ++GR R+VPE+ FL+ RG G  E  N+++    +   D  DP+W+ PP  DGT +ESVLD+LVR RQ+MS LETQFS ED+V+VSPDSDNLSILQA VLG +   +H +F FR GE R L L
Sbjct:  105 SCPLRVDAALVQFPVTELHNRYFLVRAGEGVREAQNRVYTNPVNKTSVDSGLSERGKRQVVQVTAPSLEIAGIGDTPW---LWAGMNQRSYQTAEILAGLFQVGRNRIVPEFTFLDARGYGSLEGENLSSAAAQVAAGDLLDPSWKMPPGTDGTPNESVLDILVRVRQMMSVLETQFSDEDVVVVSPDSDNLSILQAAVLGADL-RRHGEFGFRPGEARALEL 323

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BLAST of jgi.p|Trimin1|71705 vs. uniprot
Match: I1NQD2_ORYGL (Uncharacterized protein n=12 Tax=Oryzeae TaxID=147380 RepID=I1NQD2_ORYGL)

HSP 1 Score: 181 bits (460), Expect = 3.110e-51
Identity = 102/219 (46.58%), Postives = 142/219 (64.84%), Query Frame = 1

Query:  280 PAEAS---LVMSPPLRLNNRYFLMRSGQSFADAAGQIQTHPIYKLHMSNGLTELGRRQAEKAAESLSGLGAGQDNRGVIIYHDISARCLETANVLCDCMEIGRERVVPEYAFLEPRGMGLWESGNVTAILPALYRADAQDPTWRPPPNDDGTLSESVLDVLVRGRQLMSKLETQFSAEDIVLVSPDSDNLSILQAFVLGEEFFAKHSKFFFRAGEMRPL 927
            PA AS   L   PP RL NRYFL+R+G+S  +  G ++T+P+ K  + +GL+  G RQA +AA  L  LGA +D+    I+  I+ R  + A ++    EI R  +VPEY+FL+ RG+G +E G     LP +Y +D+  P  +PPP  DGT +ESV DV VR  QLMS LETQ+S + +V+VSPDSDNLSILQA ++G +   +HS  FF+ GE+RP+
Sbjct:   53 PAAASARGLFRMPPPRLANRYFLVRAGESVYEGQGVVRTNPVSKTSVDSGLSPAGLRQAARAALELQRLGACEDD--CWIWPSITQRAYQAAEIIAAANEINRSHIVPEYSFLDARGLGAFE-GKSLETLPEVYASDSISPDIKPPPISDGTPNESVADVFVRVTQLMSILETQYSGDTVVIVSPDSDNLSILQAGLIGLDL-RRHSSLFFQPGEVRPV 267

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BLAST of jgi.p|Trimin1|71705 vs. uniprot
Match: A0A3L6STI6_PANMI (Uncharacterized protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6STI6_PANMI)

HSP 1 Score: 179 bits (453), Expect = 5.480e-51
Identity = 97/207 (46.86%), Postives = 136/207 (65.70%), Query Frame = 1

Query:  307 PPLRLNNRYFLMRSGQSFADAAGQIQTHPIYKLHMSNGLTELGRRQAEKAAESLSGLGAGQDNRGVIIYHDISARCLETANVLCDCMEIGRERVVPEYAFLEPRGMGLWESGNVTAILPALYRADAQDPTWRPPPNDDGTLSESVLDVLVRGRQLMSKLETQFSAEDIVLVSPDSDNLSILQAFVLGEEFFAKHSKFFFRAGEMRPL 927
            P  RL NRYFL+R+G S  +  G ++T+P+ K  + NGL+ +G RQ  +AA  L  LGA +D+    I+  I+ R  + A ++     + R R+VPEY+FL+ RG+G +E  ++ A LP +Y AD   P  +PPP  DGT +ESV DV VR  QLMS LETQ+S E +V+VSPDSDNLSILQA ++G +   +HS  FF+ GE+RP+
Sbjct:    2 PTQRLANRYFLVRAGDSVYEGQGLLRTNPVAKTSVDNGLSPVGLRQTARAALELQRLGACEDD--CWIWPSITQRAYQAAEIIAAANGVNRSRIVPEYSFLDARGLGAFEGKSLDA-LPEVYAADNISPDLKPPPISDGTPNESVADVFVRVTQLMSILETQYSGETVVIVSPDSDNLSILQAGLIGLDL-RRHSSLFFKPGEVRPV 204

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BLAST of jgi.p|Trimin1|71705 vs. uniprot
Match: A0A6V2TEN6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2TEN6_HETAK)

HSP 1 Score: 181 bits (460), Expect = 6.350e-51
Identity = 104/247 (42.11%), Postives = 154/247 (62.35%), Query Frame = 1

Query:  208 ITRREVLTGAAAVAVGVSLASY------PEPAEASLVMSPPLR-LNNRYFLMRSGQSFADAAGQIQTHPIYKLHMSNGLTELGRRQAEKAAESLSGLGAGQDNRGVIIYHDISARCLETANVLCDCMEIGRERVVPEYAFLEPRGMGLWESGNVTAILPALYRADAQDPTWRPPPNDDGTLSESVLDVLVRGRQLMSKLETQFSAEDIVLVSPDSDNLSILQAFVLGEEFFAKHSKFFFRAGEMRPL 927
            I+RR+V+       +G +LAS+       E AEASL   PP   LNNRY+ +R G+ FADA G + T+P  KL+++NGLT  G  Q E AA +L   G G D  G ++++  +AR  +TA VL + + IGR+++VPEY+FL+ RG+G +   N+T  L  +   D     +RPP N+DGT  ES+ D+ VR RQ +S  ETQ++ ED++ ++ DSD LS+LQA + G +   +H +F+F  GE+R L
Sbjct:   64 ISRRQVIQH-----LGAALASFGFVYCKKEKAEASLQSFPPRAPLNNRYYALRPGECFADAEGVVSTNPADKLNVNNGLTSKGIAQVEAAAAALEA-GMGADAIGAVVWYSTTARAAQTATVLGEKLNIGRDKLVPEYSFLDARGLGAFNGKNLTLSLAEIDAEDQISADYRPPENEDGTTHESLNDLFVRVRQAISITETQYNGEDVIFIADDSDVLSVLQAALTGVDL-REHKQFYFENGEIRRL 303

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BLAST of jgi.p|Trimin1|71705 vs. uniprot
Match: A0A804IM79_MUSAM (Uncharacterized protein n=2 Tax=Musaceae TaxID=4637 RepID=A0A804IM79_MUSAM)

HSP 1 Score: 179 bits (454), Expect = 2.630e-50
Identity = 98/219 (44.75%), Postives = 143/219 (65.30%), Query Frame = 1

Query:  274 PEPAEA-SLVMSPPLRLNNRYFLMRSGQSFADAAGQIQTHPIYKLHMSNGLTELGRRQAEKAAESLSGLGAGQDNRGVIIYHDISARCLETANVLCDCMEIGRERVVPEYAFLEPRGMGLWESGNVTAILPALYRADAQDPTWRPPPNDDGTLSESVLDVLVRGRQLMSKLETQFSAEDIVLVSPDSDNLSILQAFVLGEEFFAKHSKFFFRAGEMRPL 927
            P PA A  L   PP RL NRYFL+R+G+S  + AG ++T+P+ K  + +GL+  G RQA +AA  L  +GA +D+    I+  I+ +  + A ++     I R R+VPEY+FL+ RG+G +E  N+ +I   +Y +D+  P  +PPP DDGT +ESV DV VR  QLMS LETQ+S + +++VSPDSDNLS+LQA ++G +   +HS   F  GE+RP+
Sbjct:   56 PSPARARGLFRMPPARLANRYFLVRAGESVYETAGVLRTNPVAKTSVDSGLSPEGARQAARAALELKQMGACEDS--CWIWPSITQQSYQAAEIIASVNSIDRSRIVPEYSFLDARGLGAFEGRNLGSIS-EVYESDSLSPDNKPPPVDDGTPNESVADVFVRVTQLMSILETQYSGDTVIIVSPDSDNLSVLQAGLVGLDL-RRHSDLLFSPGEVRPV 270

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|71705 vs. uniprot

BLAST of jgi.p|Trimin1|71705 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835Z0I4_9STRA	1.070e-230	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6H5JV72_9PHAE	1.390e-58	50.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
K3XKJ8_SETIT	2.190e-52	45.00	Uncharacterized protein n=12 Tax=Panicoideae TaxID...	[more]
A0A835YJD9_9CHLO	2.590e-52	42.00	Uncharacterized protein n=1 Tax=Edaphochlamys deba...	[more]
A0A1Y1ILS9_KLENI	3.090e-52	43.72	Histidine phosphatase n=1 Tax=Klebsormidium nitens...	[more]
A0A061RZ05_9CHLO	1.640e-51	45.29	Phosphoglycerate bisphosphoglycerate mutase family...	[more]
I1NQD2_ORYGL	3.110e-51	46.58	Uncharacterized protein n=12 Tax=Oryzeae TaxID=147...	[more]
A0A3L6STI6_PANMI	5.480e-51	46.86	Uncharacterized protein n=1 Tax=Panicum miliaceum ...	[more]
A0A6V2TEN6_HETAK	6.350e-51	42.11	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A804IM79_MUSAM	2.630e-50	44.75	Uncharacterized protein n=2 Tax=Musaceae TaxID=463...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_49	contig	Contig_49:603072..608801 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|71705\|CE71704_71
Description	Histidine phosphatase superfamily (branch 1)
COG category	S
Max annot lvl	35493\|Streptophyta
EggNOG OGs	28IES@1\|root,2QQRI@2759\|Eukaryota,37SP3@33090\|Viridiplantae,3GFKT@35493\|Streptophyta,3KMPP@4447\|Liliopsida,3IB7Q@38820\|Poales
Evalue	1.38e-53
Seed ortholog	38727.Pavir.Ea02319.1.p
Hectar predicted targeting category	signal peptide
TranscriptId	72027
Track	FilteredModels1
ProteinId	71705

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|71705	gene_10476	Tribonema minus UTEX_B_3156	gene	Contig_49 603072..608801 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|71705	Trimin1\|71705\|CE71704_71	Tribonema minus UTEX_B_3156	polypeptide	Contig_49 603158..608792 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_10476_6	exon_10476_6	Tribonema minus UTEX_B_3156	exon	Contig_49 603072..603307 -
exon_10476_5	exon_10476_5	Tribonema minus UTEX_B_3156	exon	Contig_49 604909..604996 -
exon_10476_4	exon_10476_4	Tribonema minus UTEX_B_3156	exon	Contig_49 605672..605850 -
exon_10476_3	exon_10476_3	Tribonema minus UTEX_B_3156	exon	Contig_49 606468..606563 -
exon_10476_2	exon_10476_2	Tribonema minus UTEX_B_3156	exon	Contig_49 607086..607245 -
exon_10476_1	exon_10476_1	Tribonema minus UTEX_B_3156	exon	Contig_49 608473..608801 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_10476	UTR3_10476	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_49 603072..603157 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_10476	CDS_10476	Tribonema minus UTEX_B_3156	CDS	Contig_49 608473..608792 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_10476	UTR5_10476	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_49 608793..608801 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_49:603072..608801-
coding sequence from alignment at Contig_49:603072..608801-

spliced messenger RNA

>mRNA_10476 ID=mRNA_10476|Name=jgi.p|Trimin1|71705|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1088bp|location=Sequence derived from alignment at Contig_49:603072..608801- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTTGGAAGAATGGCGGCTGCAGCGGCACTCATTGCCGTTGTCAGCTGCTG
CGTCACCTGTGCAGAGGCGTTCACGTTTCAGCACGGCAGCCTCAGTCACC
GTGGTTTTGATTATGCACGCTCCAGATCAGTGCCCCAGGCTACGTCAACA
GAGGAGCGTGGCGTGGCGGCTAGGCGAGTGGTGTGTATGGGTGCAGCAGA
TGGAGGAATAACTCGGAGAGAAGTGCTCACAGGTGCTGCGGCGGTCGCTG
TGGGTGTGTCCCTGGCGTCATATCCAGAGCCTGCTGAGGCTTCCCTTGTG
ATGTCGCCACCTTTGAGATTAAACAACAGGTACTTCCTGATGCGCTCCGG
GCAGAGCTTTGCGGATGCTGCGGGCCAGATTCAAACGCACCCCATCTACA
AGCTGCACATGAGCAACGGTCTCACAGAGCTGGGCCGCAGGCAGGCGGAG
AAGGCGGCGGAATCGCTCAGTGGGTTGGGAGCAGGGCAGGACAACCGGGG
GGTGATCATCTACCATGACATCAGCGCGCGGTGCCTGGAAACGGCCAATG
TGCTGTGTGACTGCATGGAAATAGGGCGCGAGCGGGTGGTACCGGAATAC
GCCTTCTTGGAACCGCGCGGCATGGGCCTGTGGGAGAGCGGAAACGTAAC
CGCCATTCTGCCGGCGCTGTACAGGGCGGACGCTCAGGACCCCACCTGGC
GGCCGCCGCCGAATGACGACGGCACGCTCTCGGAGTCAGTGCTCGACGTG
CTGGTGCGCGGGAGGCAGCTAATGTCAAAGCTGGAGACCCAGTTCAGCGC
CGAGGACATCGTGCTTGTGTCCCCCGACTCCGACAACCTCTCCATTCTTC
AGGCCTTTGTGCTGGGCGAGGAGTTCTTTGCCAAGCACTCCAAGTTCTTC
TTCCGCGCGGGCGAGATGCGCCCGCTGCTGCTGTCGGAGAAGACGCAGAC
GCGCTACGAGCCCGTCTACTACGCCAAGGTCAAGGCCGCCGCTGACGCGT
GAGGCGGTGACGCTCCCTCCTCCTGCAGCGCTGCTGCCGTGCAGTATGTA
GATTAGCGCTGCTGCTCGGCAGCGTGCAGCGAGGCACT

protein sequence of jgi.p|Trimin1|71705

>Trimin1|71705|CE71704_71 ID=Trimin1|71705|CE71704_71|Name=jgi.p|Trimin1|71705|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=331bp
MAAAAALIAVVSCCVTCAEAFTFQHGSLSHRGFDYARSRSVPQATSTEER
GVAARRVVCMGAADGGITRREVLTGAAAVAVGVSLASYPEPAEASLVMSP
PLRLNNRYFLMRSGQSFADAAGQIQTHPIYKLHMSNGLTELGRRQAEKAA
ESLSGLGAGQDNRGVIIYHDISARCLETANVLCDCMEIGRERVVPEYAFL
EPRGMGLWESGNVTAILPALYRADAQDPTWRPPPNDDGTLSESVLDVLVR
GRQLMSKLETQFSAEDIVLVSPDSDNLSILQAFVLGEEFFAKHSKFFFRA
GEMRPLLLSEKTQTRYEPVYYAKVKAAADA*

mRNA from alignment at Contig_49:603072..608801-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10476 ID=mRNA_10476|Name=jgi.p|Trimin1|71705|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5730bp|location=Sequence derived from alignment at Contig_49:603072..608801- (Tribonema minus UTEX_B_3156 )
CTTGGAAGAATGGCGGCTGCAGCGGCACTCATTGCCGTTGTCAGCTGCTG
CGTCACCTGTGCAGAGGCGTTCACGTTTCAGCACGGCAGCCTCAGTCACC
GTGGTTTTGATTATGCACGCTCCAGATCAGTGCCCCAGGCTACGTCAACA
GAGGAGCGTGGCGTGGCGGCTAGGCGAGTGGTGTGTATGGGTGCAGCAGA
TGGAGGAATAACTCGGAGAGAAGTGCTCACAGGTGCTGCGGCGGTCGCTG
TGGGTGTGTCCCTGGCGTCATATCCAGAGCCTGCTGAGGCTTCCCTTGTG
ATGTCGCCACCTTTGAGATTAAACAACAGGTATGCTGCCCTTTCTAATAA
TCTTCGAGGTCAATCAATCCACATTCTCATGCAGGCTAATGTTTGGTGTT
GCATTAGATACCAAACAGCTTGGTTTGACCGTGCGCGCCACGCTCCGATC
TTCGGCCTGCCAAGATATATTCAGCCGACCAGCCCTGCGCTTGCGGCATA
TGCCTGGTTACAAGTGTAAAATGCCACCCAAGTCTCGCACGCATCTGTTT
GCTTCAACAGCGGGCACAGCTGTTGTTTACTTGAGTTGACGTTGAGCTGG
TGTTCGGCAGCTGCGCCCGTAGATCTGTTGCCACCGCTTTGCTCACCATA
TTTACTTTAGTGCTGGCTTAGTTGGGATGGGGTCAATGCTGACTGGTGAT
GAGCACAGGGCAGATGCAAGCATCCCATTGCCAAGTACAAAGCTGCTTCA
ATCAGGCAACGCAGATGTCAATAGTTGGCAAGGGTGCTCTTCTAGTGCAA
CGTGTCTTTCAGCTCAGAAAATTTGAAGCGGAACTCAACTGCACGTGCGT
CGTCCGTGCTGTAGTCGCTGAAGTTTCACTTTTACGTGTTAGAACTGCAA
CAAGCTCTGCAGGTTGTTAGCCACTTTCTTCCTGCATTTGAGCTGCACAG
TGAATGGGACCAGGCCAGCCAGTGTGCCACATTAAAGCATGGACATGCAG
GACATGTATTTTGTTGCGATGGGTTTAAAAACGCAAGGCAACAATTTCGA
GTGTGGCGCTGAATTTACACATGTAGACAAGTTGTGCGGCCTCAGCTTGT
GCGGCAAAGGCCAGATTAACATGCATTGGCATCTTTGCAACCTTGACGTG
CATGCACGTCGATGACCGTAACATCCTTGTCAGTGGTCTCTCCCATTGTT
GCATTCGTAAGATGCGTCTGCAGCTTTGAAACAGCGCGACGCAGACAACA
GTCGGTCGGAGTGCATGCGTCTGGTCTGATATCTCTGACCACTGCCGCAA
CGCGAGTTTCACACACTGGTGCAAGCATCGATAGTAGTATCAACATCCAG
CCGCTTCTTTAGTTCCTTCAACGGCCTGCGCAAATACTTTCAACTCATCA
TGGCTGCCACACAGAGCTCTGCCAGCGCCGTCAGTCATCAACACTTACCT
TTGGCACTCGACCCTCAACTTCAAATCCCGATACCGTGACGCACCATGGT
TCCCAATTGGATTAAACACGGCACCGCTTTTTTTTCTCTGCCGTGTCACC
ACGCAGGTACTTCCTGATGCGCTCCGGGCAGAGCTTTGCGGATGCTGCGG
GCCAGATTCAAACGCACCCCATCTACAAGCTGCACATGAGCAACGGTCTC
ACAGAGCTGGGCCGCAGGCAGGCGGAGAAGGCGGCGGAATCGCTCAGTGG
GTTGGGAGCAGGGCAGGTGACTGAGTTGCAGATGGAGTTGAGGTTGAGGT
CAGATTGGTTGTCAAAAAATGTGTTTGTAAGGGAGGGGGGGGGGGGGGGG
GGGGGGGCTCTGGCGTGCTGATGCATATTTTAGGTGGCGGGCGTTGTAGG
TTTTACACTGACGATGAGGCGTTCGGGAGGGGGAGGTGCAGTAAAGTTGT
CGGGCAATACCTGCTCCCGCGCTGATGAGCAGCCTTGGCCGTGCGCTGTC
CTTCATTGCATTCAAGGGACGATTCGTCAGATCAGCAATAGCCAAAGAAG
CAAATGAATCACAATGACCAGAGTTCGGACAGCCACTCAGGCAATATTGT
AGACTTGAAGCACTCATTTCCAGCGTTCCACAAACGCCATGTCATTCGTT
ACACAAAACGCAATACCACCAGCGAGGCTGTCAGCTGTTGTGTGTTGCCA
CATCTTCAACTGCTTCAACTGGCGCAATGCGGCCAGTTGAGTCGACCGCT
GACATTTGACTTCATGTCCCCTTGACTCTGGTCAACAGGACAACCGGGGG
GTGATCATCTACCATGACATCAGCGCGCGGTGCCTGGAAACGGCCAATGT
GCTGTGTGACTGCATGGAAATAGGGCGCGAGCGGGTGAGCCCATATTTGC
AGTTTGGGCCAGCAAAAGCAGATACTTCTAAATCAATTATTGTCAATTTA
TGAGCTGTAGGGCATTGGATGGCACAATCACTGTTGAACTATGTGCTTTG
ACTGCAGATTGTCATTGCGTGTATGATGGCTAGTGCATACATACCATGCA
ACTTACGTACTCACCTGTGCAAACTGCCATGTTATACACGACATGCCAGC
CAGGCGCATGCACGCTTGCAACGCCAGCAGCGCCTGCATTTAGCACTGGA
CTGGACAGCTTCATGAATGGGCAGATAGCTAGTGGCAGGGCAGTGCGCGC
GAAATGTCAAGCCTGCCCTTACTGGTATTGCCCCCTTTGAGCACACTGTT
TGCTACTTTGACGAGCGAGCCCCACCGCACCTATTACTATTTCAGAAAAT
ACTTCGGCCACCCGCACCACTGTCGCCAGAGTGACACTTCCATGGTGCTG
AGCTTATACCTAATCTACACGCTTATGCTTCAGGATAACATAGTCCATAT
GCCACATGGCCACGCCTGCCGGGTCGCCGTGCCCAATTGTTTTCTCTAAT
CTACAGGGCACAGCATCACGTCTCCCGCACCACCATTCTGCATGCCCCCA
GGTGGTACCGGAATACGCCTTCTTGGAACCGCGCGGCATGGGCCTGTGGG
AGAGCGGAAACGTAACCGCCATTCTGCCGGCGCTGTACAGGGCGGACGCT
CAGGACCCCACCTGGCGGCCGCCGCCGAATGACGACGGCACGCTCTCGGA
GTCAGTGCTCGACGTGCTGGTGCGCGGGAGGTGAGGGAGGCGCTGTGCAG
CGCTCCGGAACGCTGTTGAAGATGCTGTTGAAGTTGCTGTTGAAGGTATT
GGAGATGCTGTAGGTGATTGCGCGCTACGCACGCGCGCAGTGCGCGAACG
TGCGTGGTGCAGGCGCACTGAATATTTGGCGTTGCACTTCAAGGCAGTGC
TCAGCTCATTGCGCGCCCTCATCAAATGTGTGCGGTCAGCTGCTTGTGTC
AGATTTGCTTGGCTGGCTGCCTTCCTCGACTGACACCGTTTAAAACTCAA
ACCTGCAAGCTATTTGGCATTGCCTGCTGCCTGCTCAGGAAACAAAATGC
ATGGGCATTAATGCGTGCATTACCTTCCGTCGTTTCAGGCTTCACTGCCC
CCTCACATTTTTCCCGCGCCTCGGCTGGCAGTGGCGCTGTGCGCAGATAG
CGCCCAGCTTTTCTGTTCTTGCATTGCCGCGCTTCGGTCGTGGTGGGTCC
TCTCATCTGCCCCTGCAGGCAGCTCTTGTCTGGCTGTTCTCGCGGGGACC
CGATGACCCTCGCTTTGTGCTCATGTCGTTGTCCTATGCGGCTTGATGCC
TTTGTTACGCGAGTCTTGGCAGCTTTGAATGCAGTTGAAGCACATCAGTG
CTCAGGTGCTGACCTGTGACTGAATTCTGCTGCCTTGACATCTGTGCCCA
TGCAGGCAGCTAATGTCAAAGCTGGAGACCCAGTTCAGCGCCGAGGACAT
CGTGCTTGTGTCCCCCGACTCCGACAACCTCTCCATTCTTCAGGTACGAC
GGAGTTCACGTAGGGGCTGCCCTCCTGGTCTTTGAAGGGCCTGGCTGAGG
CAGGACCCAGAGGTAGCGTTTGCGCAAGCACTGGGTGAAGACGGCTGCTG
TGACTGCCGATGGTATGTCTACACGCCATTTGCGACCAGTGCTCAGCAGC
CAGCAGGCTCCAAGTGGGTGAGTACGGCTGCTGCGAGTGCTGGTGGCTGT
ACTTCACATGCGACAGTGCTCAGCGGCTGGAGCCTGCGCATTCAGACTAC
GCTACCGTCTTGTCTACATGTAATCAAGAACACTGGACGGCTTTTTTGTT
TTTGCGTAAAAAGGGGGGGTGGACGTCCTTTATGCGAAGCTAATCAAAAG
GGATGGACGCATTTTCAGAAGAGCACAAACGTCAACTTCTATGCGCTTCG
TTGTTCATCAAGGATGATTGCTGGCCGTACCCTGGAGGGCCGCAAAACAT
TTCGGTCCCTCGCCAGTTTTGTCAGGGTCCGCGTGCCGCAGCAGCCTTCG
ATGTGCCAAAGTGTTGCTCAGTATCCATAGAGCAGAGGTTGAATCTGGTA
AACAGCGCCTATAAGGCTTGAACCCAGTCACGCAGCAGCGTACAGCAGCG
CCACCTGGCCCAGCTCCACCACCACGAGCAAGTTCAGCTCTGCTTTGAAC
TGGCGTGAACATGCAATCGGACTGTAGGGCACACTAAAGAGGGGGTGAAC
ATCTTGTTGTTGAAGCAATTAAATACGGAGTGGACATCTTGTTGATGAAG
CAATCAAAATGGTGTCCCTATGTTTTGGTTCTGGCTTTAAAACCAACAAC
AACGCCGTCCAGTGTCCTTTAAAAGTATAGACAAGACGGCACTTGTGCAT
GTAGTGGCGATCTAGAAAATGTGTAGACACCGCAGTACAAAGAGACTGGA
ACTCTGATCAGACTGAGGCTACGGTTCGCTGGAAGCAGTAACTGTTAGAA
TATGGACCGGTTCCTGCTTGTGTCACAATCATCTGGTACGGGTGGGGGTT
CAGACCCAGCAGTTTCATAGCACGTATCAGGCGTGTTCTCGGCAATGTCC
GTTACTTGGCGGTTACATCTACCGTCTGACGGTTACATTCTGCTTTGTGT
GTTTAGTAATATTCACTCTCGTAAGCCCAGCACCCACGGTCTGGCGATGC
CTCTCAGCCTCCTCTGCTGCCTGTGCTGGTGCGCAACACCGCATTCCTAA
CGTAACTCTGATACCATTACAACATGAGGCCTTCATGTTTTGTGGGGCCT
TTTGTGTGTGCAAAGCAACTACTTCGAAATATGCTAATTCATAGCCACAT
ACTTGACCCGGACTGACTACCTGAGCAGCATTGAAGCATACATGAGCAGG
CAGTTTCACGTCCCATGCCTCCTTTCCGTATGCATTGAGTTCATCCTCCT
GCTGCCGCCAGATGAACTCCTTGCGCAACGCGGTAAATCTGCCAAAACGC
TTAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCACACACA
CACACACACGCTTCAACTCATTACTAATACACATGCAGCTAATCTCCCGC
GATCCAACTCATCAACCCCACTACCTCCCTTTATGTGCGCACAGGCCTTT
GTGCTGGGCGAGGAGTTCTTTGCCAAGCACTCCAAGTTCTTCTTCCGCGC
GGGCGAGATGCGCCCGCTGCTGCTGTCGGAGAAGACGCAGACGCGCTACG
AGCCCGTCTACTACGCCAAGGTCAAGGCCGCCGCTGACGCGTGAGGCGGT
GACGCTCCCTCCTCCTGCAGCGCTGCTGCCGTGCAGTATGTAGATTAGCG
CTGCTGCTCGGCAGCGTGCAGCGAGGCACT

Coding sequence (CDS) from alignment at Contig_49:603072..608801-

>mRNA_10476 ID=mRNA_10476|Name=jgi.p|Trimin1|71705|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=993bp|location=Sequence derived from alignment at Contig_49:603072..608801- (Tribonema minus UTEX_B_3156 )
ATGGCGGCTGCAGCGGCACTCATTGCCGTTGTCAGCTGCTGCGTCACCTG
TGCAGAGGCGTTCACGTTTCAGCACGGCAGCCTCAGTCACCGTGGTTTTG
ATTATGCACGCTCCAGATCAGTGCCCCAGGCTACGTCAACAGAGGAGCGT
GGCGTGGCGGCTAGGCGAGTGGTGTGTATGGGTGCAGCAGATGGAGGAAT
AACTCGGAGAGAAGTGCTCACAGGTGCTGCGGCGGTCGCTGTGGGTGTGT
CCCTGGCGTCATATCCAGAGCCTGCTGAGGCTTCCCTTGTGATGTCGCCA
CCTTTGAGATTAAACAACAGGTACTTCCTGATGCGCTCCGGGCAGAGCTT
TGCGGATGCTGCGGGCCAGATTCAAACGCACCCCATCTACAAGCTGCACA
TGAGCAACGGTCTCACAGAGCTGGGCCGCAGGCAGGCGGAGAAGGCGGCG
GAATCGCTCAGTGGGTTGGGAGCAGGGCAGGACAACCGGGGGGTGATCAT
CTACCATGACATCAGCGCGCGGTGCCTGGAAACGGCCAATGTGCTGTGTG
ACTGCATGGAAATAGGGCGCGAGCGGGTGGTACCGGAATACGCCTTCTTG
GAACCGCGCGGCATGGGCCTGTGGGAGAGCGGAAACGTAACCGCCATTCT
GCCGGCGCTGTACAGGGCGGACGCTCAGGACCCCACCTGGCGGCCGCCGC
CGAATGACGACGGCACGCTCTCGGAGTCAGTGCTCGACGTGCTGGTGCGC
GGGAGGCAGCTAATGTCAAAGCTGGAGACCCAGTTCAGCGCCGAGGACAT
CGTGCTTGTGTCCCCCGACTCCGACAACCTCTCCATTCTTCAGGCCTTTG
TGCTGGGCGAGGAGTTCTTTGCCAAGCACTCCAAGTTCTTCTTCCGCGCG
GGCGAGATGCGCCCGCTGCTGCTGTCGGAGAAGACGCAGACGCGCTACGA
GCCCGTCTACTACGCCAAGGTCAAGGCCGCCGCTGACGCGTGA