mRNA_10325 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|169384 vs. uniprot
Match: A0A835YNI0_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNI0_9STRA) HSP 1 Score: 327 bits (838), Expect = 3.790e-111 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 1 Query: 1 MTAPTAKQVCDAAKAGDVAKLRELQLAGADINAQNEDGDVALLLAAQGGFHEAVRWLCMAGAKKDVMDKHVGATPMLFACIEGASMVVNGGVLLDGGADVSARDKSGRTALMFAAELGHPELVQWCLEFKSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVSSGFWRHSLHVSGVCARALAHAPLLYAHMLKDVVLLEVSCII 690 MTAPTAKQVCDAAKAGDVAKLRELQLAGADINAQNEDGDVALLLAAQGGFHEAVRWLCMAGAKKDVMDKHVGATPMLFACIEGASMVVNGGVLLDGGADVSARDKSGRTALMFAAELGHPELVQWCLEFKSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVSSGFWRHSLHVSGVCARALAHAPLLYAHMLKDVVLLEVSCII Sbjct: 1 MTAPTAKQVCDAAKAGDVAKLRELQLAGADINAQNEDGDVALLLAAQGGFHEAVRWLCMAGAKKDVMDKHVGATPMLFACIEGASMVVNGGVLLDGGADVSARDKSGRTALMFAAELGHPELVQWCLEFKSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVSSGFWRHSLHVSGVCARALAHAPLLYAHMLKDVVLLEVSCII 230
BLAST of jgi.p|Trimin1|169384 vs. uniprot
Match: UPI001C8C0145 (ankyrin repeat domain-containing protein n=1 Tax=Lysobacter sp. BMK333-48F3 TaxID=2867962 RepID=UPI001C8C0145) HSP 1 Score: 66.6 bits (161), Expect = 7.510e-10 Identity = 42/113 (37.17%), Postives = 67/113 (59.29%), Query Frame = 1 Query: 31 DAAKAGDVAKLRELQLAGADINAQNEDGDVALLLAAQGGFHEAVRWLCMAGAKKDVMDKHVGATPMLFACIEGASMVVNGGVLLDGGADVSARDKSGRTALMFAAELGHPELV 369 DAA+AGD+ +LR GA +A+++ G+ L+LAA G +AV L AGA +V D G T ++ A +G + ++ + G DV+A++K+G+TA MFAA G ++ Sbjct: 45 DAARAGDLERLRSALAEGASTSARDDRGNTPLILAAYYGNAQAVEALLAAGADPNVGDGARGNTALMGAIFKGDEDIARR-LIAEPGTDVNAKNKAGQTAAMFAALFGRAAII 156
BLAST of jgi.p|Trimin1|169384 vs. uniprot
Match: A0A7C4P633_9BACT (Ankyrin repeat domain-containing protein n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7C4P633_9BACT) HSP 1 Score: 59.7 bits (143), Expect = 1.150e-7 Identity = 41/112 (36.61%), Postives = 62/112 (55.36%), Query Frame = 1 Query: 37 AKAGDVAKLRELQLAGADINAQNEDGDVALLLAAQGGFHEAVRWLCMAGAKKDVMDKHVGATPMLFACIEGASMVVNGGVLLDGGADVSARDKSGRTALMFAAELGHPELVQ 372 AK G+ ++ L AGA++NA+NE G+ AL+LAA G + V L GAK + +++ + A L + ++ G ADV+A D G TALM AA GH ++V+ Sbjct: 44 AKNGNTNEVIRLIKAGANVNAKNEYGETALMLAASKGHKDIVEILIKNGAKFESINEELIAYSALGEINKVKELITKG-------ADVNANDNGGWTALMLAALKGHKDIVE 148
BLAST of jgi.p|Trimin1|169384 vs. uniprot
Match: UPI001BE749F1 (ankyrin repeat domain-containing protein n=1 Tax=Rhodoferax sp. U11-2br TaxID=2838878 RepID=UPI001BE749F1) HSP 1 Score: 58.5 bits (140), Expect = 1.280e-6 Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = 1 Query: 34 AAKAGDVAKLRELQLAGADINAQNEDGDVALLLAAQGGFHEAVRWLCMAGAKKDVMDKHVGATPMLFACIEGASMVVNGGVLLDGGADVSARDKSGRTALMFAAELGHPELVQWCLE 384 AA +GDVA++R+L AGA +NA +E G+ ALL+ A+ G ++ R L A A DV + TP+ A + G + +V +LL GADV+A + +TALM A +L Q L+ Sbjct: 76 AAASGDVARIRQLIKAGAQVNAVDEWGNTALLMGAREGEMDSARALLRARA--DVDGRGGVMTPLAAAALRGHTQMVQ--LLLRFGADVNAVGLNEQTALMNAVKLNRLGAAQALLK 188
BLAST of jgi.p|Trimin1|169384 vs. uniprot
Match: A0A1X2GTJ0_9FUNG (Glycerophosphocholine phosphodiesterase n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GTJ0_9FUNG) HSP 1 Score: 58.9 bits (141), Expect = 1.950e-6 Identity = 44/111 (39.64%), Postives = 63/111 (56.76%), Query Frame = 1 Query: 25 VCDAAKAGDVAKLRELQLAGADINAQNEDGDVALLLAAQGGFHEAVRWLCMAG-AKKDVMDKHVGATPMLFACIEGASMVVNGGVLLDGGADVSARDKSGRTALMFAAELG 354 V AA+ ++ L+ L GA +NA +++G+ ALL+A + GF V L G A D+ +K G TP++ A IEG S +V +LLDGGAD S +D +G A A G Sbjct: 442 VAVAAELKNLPLLKLLIEKGASVNACDDEGETALLVATRRGFTSGVGVLIDLGHADVDLSEKVNGMTPLMVAAIEGNSEIVQ--LLLDGGADKSRKDANGWKAFEHAVFRG 550
BLAST of jgi.p|Trimin1|169384 vs. uniprot
Match: A0A2T5H055_9SPHN (Uncharacterized protein n=8 Tax=Sphingomonas TaxID=13687 RepID=A0A2T5H055_9SPHN) HSP 1 Score: 56.6 bits (135), Expect = 2.570e-6 Identity = 43/122 (35.25%), Postives = 58/122 (47.54%), Query Frame = 1 Query: 31 DAAKAGDVAKLRELQLAGADINAQNEDGDVALLLAAQGGFHEAVRWLCMAGAKKDVMDKHVGATPMLFACIEGASMVVNGGVLLDGGADVSARDKSGRTALMFAAELGHPELVQWCLEFKSD 396 DAA+ G + L AGADINA ++ G AL+LAA G V L GA D+ G T + +G + LL G DV+AR+ +G+TALM A+ V L +D Sbjct: 41 DAARLGRTDMIDPLLKAGADINAYDDRGFTALILAAYNGQLSTVDALIAKGANACRPDRDQGNTAQMGVAFKGEDAIA--ARLLKAGCDVNARNNAGQTALMMASLFNRTRQVDMLLAAGAD 160
BLAST of jgi.p|Trimin1|169384 vs. uniprot
Match: A0A8H6D025_9HYPO (Allantoate permease n=1 Tax=Fusarium mundagurra TaxID=1567541 RepID=A0A8H6D025_9HYPO) HSP 1 Score: 58.2 bits (139), Expect = 3.520e-6 Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1 Query: 61 LRELQLAGADINAQNEDGDVALLLAAQGGFHEAVRWLCMAGAKKDVMDKHVGATPMLFACIEGASMVVNGGVLLDGGADVSARDKSGRTALMFAAELGHPELVQ 372 L+ L AG DINA + G AL +AAQ ++V +L GA DV+D+ +G TP L I GA V N +++ GA+V + KSGR AA+ G ++++ Sbjct: 180 LKRLVKAGVDINAADRKGVTALHIAAQRRSTDSVNYLIQQGATVDVIDRGLGGTP-LAGTIFGAK-VNNARAMIEAGANVFHKLKSGRPLFHLAAQQGQQKILE 281
BLAST of jgi.p|Trimin1|169384 vs. uniprot
Match: A0A365N0L1_GIBIN (Uncharacterized protein n=1 Tax=Gibberella intermedia TaxID=948311 RepID=A0A365N0L1_GIBIN) HSP 1 Score: 57.8 bits (138), Expect = 4.660e-6 Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 46 GDVAKLRELQLAGADINAQNEDGDVALLLAAQGGFHEAVRWLCMAGAKKDVMDKHVGATPMLFACIEGASMVVNGGVLLDGGADVSARDKSGRTALMFAAELGHPELV 369 GD+ K+ E+ L GAD+NA+ +G L AA+ GF V+ L +GAK D MD TP ++A +EG V++ L + + RDK GRT L A G +V Sbjct: 793 GDMKKVTEVYLKGADVNARARNGSTPLHYAAREGFISIVKLLVESGAKFDAMDS-ARMTPAMWAALEGEKEVLS---YLWRKTNFNLRDKGGRTMLHHAVLGGRCGIV 896
BLAST of jgi.p|Trimin1|169384 vs. uniprot
Match: A0A0M0L7T0_9EUKA (Ankyrin repeat-containing protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0L7T0_9EUKA) HSP 1 Score: 53.9 bits (128), Expect = 1.360e-5 Identity = 45/119 (37.82%), Postives = 61/119 (51.26%), Query Frame = 1 Query: 19 KQVCDAAKAGDVAKLRELQLAGADINAQNED--GDVALLLAAQGGFHEAVRWLCMAGAKKDVMDKHVGATPMLFACIEGASMVVNGGVLLDGGADVSARDKSGRTALMFAAELGHPELV 369 K V DAAKAG A+L L G ++N N D G AL+ A+ G VR L A A + + T + +A +G + LL+GGADV+ RDK G TA+ A + G E+V Sbjct: 7 KAVWDAAKAGKEAELGRLIGLGGNVNWHNPDYYGLTALIWASSYGREGCVRLLLEAKAIEVNAKNNYDQTALHYAAHDGYLAIAKR--LLEGGADVTLRDKYGETAIDLARKQGKSEVV 123
BLAST of jgi.p|Trimin1|169384 vs. uniprot
Match: A0A2K0VXA6_GIBNY (Uncharacterized protein n=1 Tax=Gibberella nygamai TaxID=42673 RepID=A0A2K0VXA6_GIBNY) HSP 1 Score: 56.2 bits (134), Expect = 1.490e-5 Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 1 Query: 52 VAKLRELQLAGADINAQNEDGDVALLLAAQGGFHEAVRWLCMAGAKKDVMDKHVGATPMLFACIEGASMVVNGGVLLDGGADVSARDKSGRTALMFAAELGHPELVQ 372 +A L+ L AG DINA + G L +AAQ ++V++L GA D +D +G TP L I GA V N +++ GA+V + KSGR L AA+ G ++++ Sbjct: 177 LAPLKRLVKAGVDINAVDRKGVTPLHIAAQRRRTDSVKYLIQHGASVDAIDHGLGGTP-LAGTIFGAK-VNNARAMIEAGANVFHKLKSGRPLLHLAAQQGQQKILE 281 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169384 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10325 ID=mRNA_10325|Name=jgi.p|Trimin1|169384|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=693bp|location=Sequence derived from alignment at Contig_63:656769..658929+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGACCGCACCGACGGCGAAGCAGGTGTGCGATGCTGCGAAAGCTGGCGAback to top protein sequence of jgi.p|Trimin1|169384 >Trimin1|169384|e_gw1.63.58.1 ID=Trimin1|169384|e_gw1.63.58.1|Name=jgi.p|Trimin1|169384|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=231bp MTAPTAKQVCDAAKAGDVAKLRELQLAGADINAQNEDGDVALLLAAQGGFback to top mRNA from alignment at Contig_63:656769..658929+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10325 ID=mRNA_10325|Name=jgi.p|Trimin1|169384|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2161bp|location=Sequence derived from alignment at Contig_63:656769..658929+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_63:656769..658929+ >mRNA_10325 ID=mRNA_10325|Name=jgi.p|Trimin1|169384|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=693bp|location=Sequence derived from alignment at Contig_63:656769..658929+ (Tribonema minus UTEX_B_3156 )back to top |