mRNA_10315 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|350464
Unique Name	mRNA_10315
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|350464 vs. uniprot
Match: A0A836CBD9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBD9_9STRA)

HSP 1 Score: 751 bits (1940), Expect = 5.160e-272
Identity = 398/398 (100.00%), Postives = 398/398 (100.00%), Query Frame = 1

Query:    1 MRLEDAAEVRFRSEQQKQKGNIKAVSRAVRVLNNIVGSATTLGDMFGQVSSPPVFQHDDDFDDADTETAAALSSPSDALPDASQSSISVNVTGINGTSVSVDKLKRVATRGQVGCATVIDGPFTQLEEYMQTPVSQYSTLDDKLITRLDDETFRLAVPLASYVGLDLTPTVDVAVDTSAVQRERLLRMHSLGSTLYGTSSDTAALGKPQVLAPRGWGRRLAQQERRRRQRRKARITEGKPEWFEVSFEAKVRWSEGMRRDLMTEGAFLGLAQRNATAEGACTLACGVDVEVAVVLPPPFSKVMPRGVVGGAMRVVLRAVLSALAPALLSYLAQDYERRSGMQQRSTPLISHDSSVEDAEFDGEVPNLGLDEANFNDVDADFDEGDEEDDEEWFSDSDD 1194
            MRLEDAAEVRFRSEQQKQKGNIKAVSRAVRVLNNIVGSATTLGDMFGQVSSPPVFQHDDDFDDADTETAAALSSPSDALPDASQSSISVNVTGINGTSVSVDKLKRVATRGQVGCATVIDGPFTQLEEYMQTPVSQYSTLDDKLITRLDDETFRLAVPLASYVGLDLTPTVDVAVDTSAVQRERLLRMHSLGSTLYGTSSDTAALGKPQVLAPRGWGRRLAQQERRRRQRRKARITEGKPEWFEVSFEAKVRWSEGMRRDLMTEGAFLGLAQRNATAEGACTLACGVDVEVAVVLPPPFSKVMPRGVVGGAMRVVLRAVLSALAPALLSYLAQDYERRSGMQQRSTPLISHDSSVEDAEFDGEVPNLGLDEANFNDVDADFDEGDEEDDEEWFSDSDD
Sbjct:    1 MRLEDAAEVRFRSEQQKQKGNIKAVSRAVRVLNNIVGSATTLGDMFGQVSSPPVFQHDDDFDDADTETAAALSSPSDALPDASQSSISVNVTGINGTSVSVDKLKRVATRGQVGCATVIDGPFTQLEEYMQTPVSQYSTLDDKLITRLDDETFRLAVPLASYVGLDLTPTVDVAVDTSAVQRERLLRMHSLGSTLYGTSSDTAALGKPQVLAPRGWGRRLAQQERRRRQRRKARITEGKPEWFEVSFEAKVRWSEGMRRDLMTEGAFLGLAQRNATAEGACTLACGVDVEVAVVLPPPFSKVMPRGVVGGAMRVVLRAVLSALAPALLSYLAQDYERRSGMQQRSTPLISHDSSVEDAEFDGEVPNLGLDEANFNDVDADFDEGDEEDDEEWFSDSDD 398

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350464 vs. uniprot

BLAST of jgi.p|Trimin1|350464 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CBD9_9STRA	5.160e-272	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_63	contig	Contig_63:599905..602627 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|350464\|estExt_Genemark1.C_Ctg_630070
Description	Protein of unknown function (DUF1997)
COG category	S
Max annot lvl	3041\|Chlorophyta
EggNOG OGs	2CN26@1\|root,2QTF3@2759\|Eukaryota,37NMJ@33090\|Viridiplantae,34I4H@3041\|Chlorophyta
Evalue	0.000644
Seed ortholog	3067.XP_002945783.1
Hectar predicted targeting category	other localisation
TranscriptId	350786
Track	FilteredModels1
ProteinId	350464

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350464	gene_10315	Tribonema minus UTEX_B_3156	gene	Contig_63 599905..602627 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_10315_2	exon_10315_2	Tribonema minus UTEX_B_3156	exon	Contig_63 599905..600529 -
exon_10315_1	exon_10315_1	Tribonema minus UTEX_B_3156	exon	Contig_63 601805..602627 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_10315	UTR3_10315	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_63 599905..600155 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_10315	CDS_10315	Tribonema minus UTEX_B_3156	CDS	Contig_63 601805..602627 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350464	Trimin1\|350464\|estExt_Genemark1.C_Ctg_630070	Tribonema minus UTEX_B_3156	polypeptide	Contig_63 600156..602627 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_63:599905..602627-
coding sequence from alignment at Contig_63:599905..602627-

spliced messenger RNA

>mRNA_10315 ID=mRNA_10315|Name=jgi.p|Trimin1|350464|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1448bp|location=Sequence derived from alignment at Contig_63:599905..602627- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATTGGAGGATGCTGCGGAAGTGCGGTTTCGGAGTGAGCAGCAGAA
GCAGAAGGGCAACATCAAGGCAGTCAGCAGGGCTGTACGGGTCCTCAACA
ACATTGTTGGCAGCGCCACGACCTTAGGTGACATGTTTGGGCAGGTGTCC
AGCCCACCTGTGTTCCAGCACGATGATGACTTTGACGACGCTGACACAGA
GACAGCAGCAGCACTCTCATCGCCATCAGACGCTCTTCCTGACGCATCAC
AGTCGTCTATTAGCGTCAACGTAACTGGAATCAATGGCACATCCGTGTCC
GTCGACAAACTCAAGAGAGTTGCCACCCGAGGGCAGGTCGGCTGCGCCAC
CGTAATCGATGGCCCCTTCACGCAGCTGGAGGAATACATGCAGACGCCTG
TTAGTCAGTACTCGACCCTGGATGACAAGCTGATCACGCGTCTCGATGAC
GAGACCTTCCGACTAGCCGTTCCGCTGGCCTCCTACGTGGGCCTGGATCT
CACCCCCACCGTCGACGTAGCAGTCGACACTTCCGCAGTGCAGAGAGAGC
GCTTGCTGCGAATGCACTCCCTGGGCTCAACGCTCTACGGCACCAGCAGC
GACACGGCAGCTCTGGGCAAGCCGCAGGTGCTGGCGCCGCGCGGGTGGGG
GCGGAGGCTTGCGCAGCAGGAGCGGCGGCGGCGGCAGCGGCGGAAAGCGC
GCATCACGGAGGGCAAGCCGGAGTGGTTTGAAGTTAGCTTTGAGGCCAAG
GTGCGGTGGAGCGAGGGAATGCGCAGGGACCTGATGACGGAGGGAGCGTT
TTTGGGGCTGGCGCAGCGTAATGCCACCGCGGAGGGCGCGTGCACGCTGG
CCTGCGGCGTTGATGTTGAAGTTGCGGTTGTGCTCCCCCCCCCCTTCTCC
AAGGTCATGCCGCGGGGCGTCGTGGGCGGAGCGATGCGCGTCGTGCTGCG
TGCCGTGCTGAGCGCGCTAGCACCGGCGCTGCTGTCGTACCTCGCGCAAG
ATTACGAGCGGCGCAGCGGCATGCAGCAGCGCTCAACGCCTCTGATAAGT
CATGACAGCAGTGTTGAAGATGCCGAGTTCGATGGCGAGGTGCCAAATTT
GGGACTTGATGAGGCGAATTTCAATGACGTTGACGCGGACTTCGATGAGG
GAGACGAGGAGGATGACGAGGAGTGGTTTTCGGATTCCGATGATTAGCGC
TCGAGGTACAAGTTGAAGCTGGATCATTGGGACCGCCCCTTGATGTTGGC
GTTTTTCAAAAAGCACACCAGGCGTTTGTGGTGGTGTGTTAGGCGGGTTA
TCGTGTAGCGGGCATTGGCAGCGTGCTCCGAAAGCAGTTTTCACAAGGTG
TTCATATTGTGCATATGGCAGGCAGCCTGTGTTGTCTGCGTTCCATCTTC
CGTGAGTAACGCAGTGCATCACATTCAGGTATTGGCTGCACTGCGATC

protein sequence of jgi.p|Trimin1|350464

>Trimin1|350464|estExt_Genemark1.C_Ctg_630070 ID=Trimin1|350464|estExt_Genemark1.C_Ctg_630070|Name=jgi.p|Trimin1|350464|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=399bp
MRLEDAAEVRFRSEQQKQKGNIKAVSRAVRVLNNIVGSATTLGDMFGQVS
SPPVFQHDDDFDDADTETAAALSSPSDALPDASQSSISVNVTGINGTSVS
VDKLKRVATRGQVGCATVIDGPFTQLEEYMQTPVSQYSTLDDKLITRLDD
ETFRLAVPLASYVGLDLTPTVDVAVDTSAVQRERLLRMHSLGSTLYGTSS
DTAALGKPQVLAPRGWGRRLAQQERRRRQRRKARITEGKPEWFEVSFEAK
VRWSEGMRRDLMTEGAFLGLAQRNATAEGACTLACGVDVEVAVVLPPPFS
KVMPRGVVGGAMRVVLRAVLSALAPALLSYLAQDYERRSGMQQRSTPLIS
HDSSVEDAEFDGEVPNLGLDEANFNDVDADFDEGDEEDDEEWFSDSDD*

mRNA from alignment at Contig_63:599905..602627-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10315 ID=mRNA_10315|Name=jgi.p|Trimin1|350464|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2723bp|location=Sequence derived from alignment at Contig_63:599905..602627- (Tribonema minus UTEX_B_3156 )
ATGCGATTGGAGGATGCTGCGGAAGTGCGGTTTCGGAGTGAGCAGCAGAA
GCAGAAGGGCAACATCAAGGCAGTCAGCAGGGCTGTACGGGTCCTCAACA
ACATTGTTGGCAGCGCCACGACCTTAGGTGACATGTTTGGGCAGGTGTCC
AGCCCACCTGTGTTCCAGCACGATGATGACTTTGACGACGCTGACACAGA
GACAGCAGCAGCACTCTCATCGCCATCAGACGCTCTTCCTGACGCATCAC
AGTCGTCTATTAGCGTCAACGTAACTGGAATCAATGGCACATCCGTGTCC
GTCGACAAACTCAAGAGAGTTGCCACCCGAGGGCAGGTCGGCTGCGCCAC
CGTAATCGATGGCCCCTTCACGCAGCTGGAGGAATACATGCAGACGCCTG
TTAGTCAGTACTCGACCCTGGATGACAAGCTGATCACGCGTCTCGATGAC
GAGACCTTCCGACTAGCCGTTCCGCTGGCCTCCTACGTGGGCCTGGATCT
CACCCCCACCGTCGACGTAGCAGTCGACACTTCCGCAGTGCAGAGAGAGC
GCTTGCTGCGAATGCACTCCCTGGGCTCAACGCTCTACGGCACCAGCAGC
GACACGGCAGCTCTGGGCAAGCCGCAGGTGCTGGCGCCGCGCGGGTGGGG
GCGGAGGCTTGCGCAGCAGGAGCGGCGGCGGCGGCAGCGGCGGAAAGCGC
GCATCACGGAGGGCAAGCCGGAGTGGTTTGAAGTTAGCTTTGAGGCCAAG
GTGCGGTGGAGCGAGGGAATGCGCAGGGACCTGATGACGGAGGGAGCGTT
TTTGGGGCTGGCGCAGCGTAATGGTGAGCATCGCTGTGCGTGCTTGCATG
AATTTCATCGCTAGCCTTTTTGTCTGTTGATTGCAACAACAGCTCTTCAT
TGCAACAGCTCCTTGGCTGCATGCTGTATGAGTATCAGCAGAGAAGAAAG
CGTTGAGGCGCTCATAGTCTGTCAGTGCCATTGACATGAGAGCAAGAGGT
CATCACGTATTATGTGCGTATGCAGTTGAAGAATGCTGTTTGCAGATGGG
CCGCAGCACAATGGCCCAAGTTGATACGTGCCACATGTATATTGAAACGA
AAAATGGCACAACAGTGGCATAACGAACCTTGTTGCATTCATACCTGCAG
ATGGAGGTTGTTGGGCATAGTTTAACATCATTTCGCGCAGCATTTTTTAC
AAAAACCTCCAGCATTCAAGTACCTGAATGGGCTAGGTTCATCGAGCAAG
TTCCTGTACTGCTTGTCTAGACTACTTCAACTACTTCACAGCATGAAACT
ACTGCGAAGCACCATAACATGACAGAAACTCCACCCCGAGTATGGTCCGT
GAACACCTCGCGGCGAGTGAATGATGCTTGGAGTTTCAGTTGCATTATGT
GTTCCTCATGCAGCTGTGTCCAACGACGAGCAGGCTGTTGACATTCACAG
GCTTATGCTGCGGCAGAATAGTGTAGGGGCTACTGACGTACACTGCATAC
GCACCCAAAGTAGCGGTGTCCCCTTCGCACTTGAGTGCTGAGCGATGACG
GGGCAAACACCCTGAGGCGTTCACAGTTTCATGTGCGCAGATCACCAAGG
GTCTGTGTAAGCATTCTGCACATTTGTTTTGTGCAATCGTTTCTGTCTCC
CTTAGTACTGTTGTATGAAGCCGCAATGATGTGAAGGTTTGCAACTCAAG
TACAGCAACTTTGCTGTAAGCGCTGAGCACGGTTGCAGCGAGCGACTTGC
ACCCTCATAATCTGCTGATACAGGGTTGTGCAGTGTGCGGAGCGGTCAAG
TGATGCTGCAAAGCGCGGTACAGTGGCATGTGTCAGATATGGCTGAGACC
ATCTGGCAAACAGATTGCCACGTGCATGACTCTGCAACATATGCACTAAT
ATTTCAAAGTTGCAACATCACCCAACATGAGTTGTGCTGTGCAACTATCA
TTCCCTCTCAAGAACCTTGATCGCCCATGCATAACACTGCCACATCATCG
AGACCACACAAGCTTGCACCACAGCCTTCTGGCACTCACTGTCGCTCACT
TTTCTGTCAATGCCACTCCGTTGCACTCTGCGTTCTCTTCCATTTCAGCC
ACCGCGGAGGGCGCGTGCACGCTGGCCTGCGGCGTTGATGTTGAAGTTGC
GGTTGTGCTCCCCCCCCCCTTCTCCAAGGTCATGCCGCGGGGCGTCGTGG
GCGGAGCGATGCGCGTCGTGCTGCGTGCCGTGCTGAGCGCGCTAGCACCG
GCGCTGCTGTCGTACCTCGCGCAAGATTACGAGCGGCGCAGCGGCATGCA
GCAGCGCTCAACGCCTCTGATAAGTCATGACAGCAGTGTTGAAGATGCCG
AGTTCGATGGCGAGGTGCCAAATTTGGGACTTGATGAGGCGAATTTCAAT
GACGTTGACGCGGACTTCGATGAGGGAGACGAGGAGGATGACGAGGAGTG
GTTTTCGGATTCCGATGATTAGCGCTCGAGGTACAAGTTGAAGCTGGATC
ATTGGGACCGCCCCTTGATGTTGGCGTTTTTCAAAAAGCACACCAGGCGT
TTGTGGTGGTGTGTTAGGCGGGTTATCGTGTAGCGGGCATTGGCAGCGTG
CTCCGAAAGCAGTTTTCACAAGGTGTTCATATTGTGCATATGGCAGGCAG
CCTGTGTTGTCTGCGTTCCATCTTCCGTGAGTAACGCAGTGCATCACATT
CAGGTATTGGCTGCACTGCGATC

Coding sequence (CDS) from alignment at Contig_63:599905..602627-

>mRNA_10315 ID=mRNA_10315|Name=jgi.p|Trimin1|350464|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1197bp|location=Sequence derived from alignment at Contig_63:599905..602627- (Tribonema minus UTEX_B_3156 )
ATGCGATTGGAGGATGCTGCGGAAGTGCGGTTTCGGAGTGAGCAGCAGAA
GCAGAAGGGCAACATCAAGGCAGTCAGCAGGGCTGTACGGGTCCTCAACA
ACATTGTTGGCAGCGCCACGACCTTAGGTGACATGTTTGGGCAGGTGTCC
AGCCCACCTGTGTTCCAGCACGATGATGACTTTGACGACGCTGACACAGA
GACAGCAGCAGCACTCTCATCGCCATCAGACGCTCTTCCTGACGCATCAC
AGTCGTCTATTAGCGTCAACGTAACTGGAATCAATGGCACATCCGTGTCC
GTCGACAAACTCAAGAGAGTTGCCACCCGAGGGCAGGTCGGCTGCGCCAC
CGTAATCGATGGCCCCTTCACGCAGCTGGAGGAATACATGCAGACGCCTG
TTAGTCAGTACTCGACCCTGGATGACAAGCTGATCACGCGTCTCGATGAC
GAGACCTTCCGACTAGCCGTTCCGCTGGCCTCCTACGTGGGCCTGGATCT
CACCCCCACCGTCGACGTAGCAGTCGACACTTCCGCAGTGCAGAGAGAGC
GCTTGCTGCGAATGCACTCCCTGGGCTCAACGCTCTACGGCACCAGCAGC
GACACGGCAGCTCTGGGCAAGCCGCAGGTGCTGGCGCCGCGCGGGTGGGG
GCGGAGGCTTGCGCAGCAGGAGCGGCGGCGGCGGCAGCGGCGGAAAGCGC
GCATCACGGAGGGCAAGCCGGAGTGGTTTGAAGTTAGCTTTGAGGCCAAG
GTGCGGTGGAGCGAGGGAATGCGCAGGGACCTGATGACGGAGGGAGCGTT
TTTGGGGCTGGCGCAGCGTAATGCCACCGCGGAGGGCGCGTGCACGCTGG
CCTGCGGCGTTGATGTTGAAGTTGCGGTTGTGCTCCCCCCCCCCTTCTCC
AAGGTCATGCCGCGGGGCGTCGTGGGCGGAGCGATGCGCGTCGTGCTGCG
TGCCGTGCTGAGCGCGCTAGCACCGGCGCTGCTGTCGTACCTCGCGCAAG
ATTACGAGCGGCGCAGCGGCATGCAGCAGCGCTCAACGCCTCTGATAAGT
CATGACAGCAGTGTTGAAGATGCCGAGTTCGATGGCGAGGTGCCAAATTT
GGGACTTGATGAGGCGAATTTCAATGACGTTGACGCGGACTTCGATGAGG
GAGACGAGGAGGATGACGAGGAGTGGTTTTCGGATTCCGATGATTAG