mRNA_1028 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151461
Unique NamemRNA_1028
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|151461 vs. uniprot
Match: A0A835ZQ54_9STRA (EsV-1-7 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ54_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.040e-30
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 CTKTPSYGYEADRRRRCCSLHRRDGMIYLKRRKCAVADCEKLSSYGKQGGAARF 162
            CTKTPSYGYEADRRRRCCSLHRRDGMIYLKRRKCAVADCEKLSSYGKQGGAARF
Sbjct:    1 CTKTPSYGYEADRRRRCCSLHRRDGMIYLKRRKCAVADCEKLSSYGKQGGAARF 54
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BLAST of jgi.p|Trimin1|151461 vs. uniprot
Match: A0A835Z5G2_9STRA (EsV-1-7 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G2_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.820e-19
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 CTKTPSYGYEADRRRRCCSLHRRDGMIYLKRRKCAVADCEKLSSYGKQGGAARF 162
            C+KTPSYGYE DR+RR CS H+ DGM+YLKRRKC++  CEKLSSYG+ GG+ARF
Sbjct:   22 CSKTPSYGYEDDRKRRRCSQHKLDGMVYLKRRKCSMGACEKLSSYGRVGGSARF 75
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151461 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZQ54_9STRA1.040e-30100.00EsV-1-7 (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
A0A835Z5G2_9STRA1.820e-1972.22EsV-1-7 (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:675594..676766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151461|gw1.1.330.1
Hectar predicted targeting categoryother localisation
TranscriptId151783
TrackFilteredModels1
ProteinId151461
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151461gene_1028Tribonema minus UTEX_B_3156 geneContig_1 675594..676766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151461Trimin1|151461|gw1.1.330.1Tribonema minus UTEX_B_3156 polypeptideContig_1 675594..676766 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1028_2exon_1028_2Tribonema minus UTEX_B_3156 exonContig_1 675594..675830 -
exon_1028_1exon_1028_1Tribonema minus UTEX_B_3156 exonContig_1 676590..676766 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1028CDS_1028Tribonema minus UTEX_B_3156 CDSContig_1 676590..676766 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1028 ID=mRNA_1028|Name=jgi.p|Trimin1|151461|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=414bp|location=Sequence derived from alignment at Contig_1:675594..676766- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCACGAAGACGCCCTCATATGGCTACGAAGCAGACCGGCGGCGCAGGTG
CTGCAGCCTGCACCGGCGCGACGGCATGATCTATCTCAAGAGGCGCAAGT
GCGCCGTGGCGGACTGCGAGAAGCTGTCGAGCTACGGCAAGCAGGGGGGG
GCGGCGCGCTTCTGCCTGGCGCACAAGACGCCGGAGATGGTGGACCTCGT
GAACCGCCGCTGCGAGATGGAGGGCTGCAACCGCCGCCCCGTCTTTGCGC
TGCCGGGGCAGAAGGCACGGGTGTGCTTGGACCACCGGTCCTTGATGATG
GTCGACGTTATCAACCATAGGTGTATGTGGGCGCAGTGCACGCTCGTCGC
GTGCTACGGGCTGCCGGGCGAGCGCGCGAGCAGCTGCGCGCAGCACCACA
CGGAGGGCATGCAG
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protein sequence of jgi.p|Trimin1|151461

>Trimin1|151461|gw1.1.330.1 ID=Trimin1|151461|gw1.1.330.1|Name=jgi.p|Trimin1|151461|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=138bp
CTKTPSYGYEADRRRRCCSLHRRDGMIYLKRRKCAVADCEKLSSYGKQGG
AARFCLAHKTPEMVDLVNRRCEMEGCNRRPVFALPGQKARVCLDHRSLMM
VDVINHRCMWAQCTLVACYGLPGERASSCAQHHTEGMQ
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mRNA from alignment at Contig_1:675594..676766-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1028 ID=mRNA_1028|Name=jgi.p|Trimin1|151461|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1173bp|location=Sequence derived from alignment at Contig_1:675594..676766- (Tribonema minus UTEX_B_3156 )
TGCACGAAGACGCCCTCATATGGCTACGAAGCAGACCGGCGGCGCAGGTG
CTGCAGCCTGCACCGGCGCGACGGCATGATCTATCTCAAGAGGCGCAAGT
GCGCCGTGGCGGACTGCGAGAAGCTGTCGAGCTACGGCAAGCAGGGGGGG
GCGGCGCGCTTCTGCCTGGCGCACAAGGTGCGACACGCGTCCCCGATGTA
CGAACCTGTACACTAGGTAGCAGTGGCCTTTGCAGTAGCACGCGGCGCTG
CGCTGCGCGATTTGTGTCTGTGCGACCTCGAAGCACGTCTGCAACCTTAG
CACGCATTCAAGCTGTCTCGAGCCCTGGCGTTGCTTCTGCGTCTGCTGCG
GCGCTGCTGCGGCGGGCACTGGAATCAGCGAAGCTTGTGAGTCAGCGCGG
CGAGGCGGAGCGCTGCAGCCGCCGCCTCCTGAATGACTTGTTGCGGGGCT
CTGCCACACTCTCCTGCCGCTGCCGCGGAGACCGCAGGACTACGAGGCAT
GTGCCATTGCAAGTCGGCGCAAGCACAGATGTAGGAGATGGTGAACCTTT
CACCCGCCGCAAGCACTGGCTCCTGTAATCGCCTAGGTATTGAACTGCGC
ATGTCGCGGCTGCCACTGCCTTCGTTAACAATCGACCTCGTGCGCAGGCA
TCACAAGGCAGCGATTGAAACGGCCGCTGATATCCTTATTTGAGTTGTAG
CCGAGGCGCAATTTTTGCTGCCGTGGCGCACGCCGGGATGCGGGGCCCGG
CGCTGCGCAATCTGACGCCACCACCGCTGCCGCAACTCCTCCCCACAAGC
GCGTGTGCCGACCTCGTGGTTGCTACTGTTCACTGCTTCGGCGACTGCGC
CGCGGCTGCCGCCCCGCGCTCTGGTCACTGATCTCGCTGCCTCCGCCCGC
CGCCGCCGCCGCCCGCTGCCGCCGCCGCTGCCGCAGACGCCGGAGATGGT
GGACCTCGTGAACCGCCGCTGCGAGATGGAGGGCTGCAACCGCCGCCCCG
TCTTTGCGCTGCCGGGGCAGAAGGCACGGGTGTGCTTGGACCACCGGTCC
TTGATGATGGTCGACGTTATCAACCATAGGTGTATGTGGGCGCAGTGCAC
GCTCGTCGCGTGCTACGGGCTGCCGGGCGAGCGCGCGAGCAGCTGCGCGC
AGCACCACACGGAGGGCATGCAG
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Coding sequence (CDS) from alignment at Contig_1:675594..676766-

>mRNA_1028 ID=mRNA_1028|Name=jgi.p|Trimin1|151461|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=414bp|location=Sequence derived from alignment at Contig_1:675594..676766- (Tribonema minus UTEX_B_3156 )
TGCACGAAGACGCCCTCATATGGCTACGAAGCAGACCGGCGGCGCAGGTG
CTGCAGCCTGCACCGGCGCGACGGCATGATCTATCTCAAGAGGCGCAAGT
GCGCCGTGGCGGACTGCGAGAAGCTGTCGAGCTACGGCAAGCAGGGGGGG
GCGGCGCGCTTCTGCCTGGCGCACAAGACGCCGGAGATGGTGGACCTCGT
GAACCGCCGCTGCGAGATGGAGGGCTGCAACCGCCGCCCCGTCTTTGCGC
TGCCGGGGCAGAAGGCACGGGTGTGCTTGGACCACCGGTCCTTGATGATG
GTCGACGTTATCAACCATAGGTGTATGTGGGCGCAGTGCACGCTCGTCGC
GTGCTACGGGCTGCCGGGCGAGCGCGCGAGCAGCTGCGCGCAGCACCACA
CGGAGGGCATGCAG
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