mRNA_10254 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|148020
Unique NamemRNA_10254
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|148020 vs. uniprot
Match: A0A836C9G1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9G1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.930e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 MGCRALAELAQCAQGSAILIAAGACDTICAAMFAYPEQMEIQGNSC 138
            MGCRALAELAQCAQGSAILIAAGACDTICAAMFAYPEQMEIQGNSC
Sbjct:    1 MGCRALAELAQCAQGSAILIAAGACDTICAAMFAYPEQMEIQGNSC 46
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148020 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C9G1_9STRA3.930e-20100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_63contigContig_63:22464..23006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|148020|gw1.63.85.1
Hectar predicted targeting categoryother localisation
TranscriptId148342
TrackFilteredModels1
ProteinId148020
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148020gene_10254Tribonema minus UTEX_B_3156 geneContig_63 22464..23006 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10254_1exon_10254_1Tribonema minus UTEX_B_3156 exonContig_63 22464..23006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10254CDS_10254Tribonema minus UTEX_B_3156 CDSContig_63 22464..23006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148020Trimin1|148020|gw1.63.85.1Tribonema minus UTEX_B_3156 polypeptideContig_63 22464..23006 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10254 ID=mRNA_10254|Name=jgi.p|Trimin1|148020|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=543bp|location=Sequence derived from alignment at Contig_63:22464..23006+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTGTAGAGCACTGGCAGAGCTAGCACAGTGCGCTCAGGGCAGTGC
GATCCTCATCGCAGCTGGCGCTTGCGACACAATTTGTGCAGCCATGTTTG
CGTATCCTGAGCAAATGGAGATACAAGGCAATTCTTGTGCAGCGATCTGC
AGGCTGCTGGACGCGGGAGAAGCTCCTAGCACACTTTACAGGGCAGGAGG
GGGGATGCGAGTGGCTGAGGCAATGATGGAGTTTCCGCATAGCGTCCACA
TTCAACAAAATGGTTGTGGCGTGACGGCACGGTTGGCACTGGACTCGCAC
AATCGCAACGCGCTCATCGCTGCGGGCAGCTGTGAGATCATCACAAAGGC
CATGGCTACCTTTCCTGAGCAAGAAGCGATCCAAGGCTACGGCTGCGCGG
CGATTGCAAACATTGCTGCGGAGTGTGAGATCAGGGAGCGGCTGAAAAAT
GCGGAGGCGGAGGAGAGGGTAGTGGATGCCATGCTCAAGTTTTCGGGAAA
TGCTCAGTTGCAGCGAGTTGGTGAGCACGCCATTAGCCTGTTG
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protein sequence of jgi.p|Trimin1|148020

>Trimin1|148020|gw1.63.85.1 ID=Trimin1|148020|gw1.63.85.1|Name=jgi.p|Trimin1|148020|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=181bp
MGCRALAELAQCAQGSAILIAAGACDTICAAMFAYPEQMEIQGNSCAAIC
RLLDAGEAPSTLYRAGGGMRVAEAMMEFPHSVHIQQNGCGVTARLALDSH
NRNALIAAGSCEIITKAMATFPEQEAIQGYGCAAIANIAAECEIRERLKN
AEAEERVVDAMLKFSGNAQLQRVGEHAISLL
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mRNA from alignment at Contig_63:22464..23006+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10254 ID=mRNA_10254|Name=jgi.p|Trimin1|148020|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=543bp|location=Sequence derived from alignment at Contig_63:22464..23006+ (Tribonema minus UTEX_B_3156 )
ATGGGGTGTAGAGCACTGGCAGAGCTAGCACAGTGCGCTCAGGGCAGTGC
GATCCTCATCGCAGCTGGCGCTTGCGACACAATTTGTGCAGCCATGTTTG
CGTATCCTGAGCAAATGGAGATACAAGGCAATTCTTGTGCAGCGATCTGC
AGGCTGCTGGACGCGGGAGAAGCTCCTAGCACACTTTACAGGGCAGGAGG
GGGGATGCGAGTGGCTGAGGCAATGATGGAGTTTCCGCATAGCGTCCACA
TTCAACAAAATGGTTGTGGCGTGACGGCACGGTTGGCACTGGACTCGCAC
AATCGCAACGCGCTCATCGCTGCGGGCAGCTGTGAGATCATCACAAAGGC
CATGGCTACCTTTCCTGAGCAAGAAGCGATCCAAGGCTACGGCTGCGCGG
CGATTGCAAACATTGCTGCGGAGTGTGAGATCAGGGAGCGGCTGAAAAAT
GCGGAGGCGGAGGAGAGGGTAGTGGATGCCATGCTCAAGTTTTCGGGAAA
TGCTCAGTTGCAGCGAGTTGGTGAGCACGCCATTAGCCTGTTG
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Coding sequence (CDS) from alignment at Contig_63:22464..23006+

>mRNA_10254 ID=mRNA_10254|Name=jgi.p|Trimin1|148020|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=543bp|location=Sequence derived from alignment at Contig_63:22464..23006+ (Tribonema minus UTEX_B_3156 )
ATGGGGTGTAGAGCACTGGCAGAGCTAGCACAGTGCGCTCAGGGCAGTGC
GATCCTCATCGCAGCTGGCGCTTGCGACACAATTTGTGCAGCCATGTTTG
CGTATCCTGAGCAAATGGAGATACAAGGCAATTCTTGTGCAGCGATCTGC
AGGCTGCTGGACGCGGGAGAAGCTCCTAGCACACTTTACAGGGCAGGAGG
GGGGATGCGAGTGGCTGAGGCAATGATGGAGTTTCCGCATAGCGTCCACA
TTCAACAAAATGGTTGTGGCGTGACGGCACGGTTGGCACTGGACTCGCAC
AATCGCAACGCGCTCATCGCTGCGGGCAGCTGTGAGATCATCACAAAGGC
CATGGCTACCTTTCCTGAGCAAGAAGCGATCCAAGGCTACGGCTGCGCGG
CGATTGCAAACATTGCTGCGGAGTGTGAGATCAGGGAGCGGCTGAAAAAT
GCGGAGGCGGAGGAGAGGGTAGTGGATGCCATGCTCAAGTTTTCGGGAAA
TGCTCAGTTGCAGCGAGTTGGTGAGCACGCCATTAGCCTGTTG
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