mRNA_10243 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351980
Unique NamemRNA_10243
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A836CN02_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN02_9STRA)

HSP 1 Score: 320 bits (819), Expect = 5.200e-110
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1
Query:    1 MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 492
            MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR
Sbjct:    1 MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 164          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A835Z1W0_9STRA (Uncharacterized protein n=8 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W0_9STRA)

HSP 1 Score: 306 bits (785), Expect = 2.040e-102
Identity = 158/164 (96.34%), Postives = 160/164 (97.56%), Query Frame = 1
Query:    1 MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 492
            MHERRLALIDREKTQQLALI NGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHD GALIVARPM EDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAG+ECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRT T+LNR
Sbjct:  164 MHERRLALIDREKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDAGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTATLLNR 327          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A835ZAN0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN0_9STRA)

HSP 1 Score: 267 bits (682), Expect = 2.600e-80
Identity = 138/157 (87.90%), Postives = 146/157 (92.99%), Query Frame = 1
Query:   88 FGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR*DTTSANRRLCQVACAVRVRVV 558
            FGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPM EDDPSVATP A VAHRGPEISM SVAAEMGVRIKAG+ECLIGKKVKALYAIKYGTAAAAAIPKRN+ FRG++FAENTYWKR+QD MEEAI TVTMLNR DTTSA+ RLCQVACA R+ +V
Sbjct:  291 FGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPSAHVAHRGPEISMQSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNITFRGQIFAENTYWKRNQDHMEEAISTVTMLNRRDTTSADCRLCQVACAGRIVLV 447          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A836CBT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT4_9STRA)

HSP 1 Score: 241 bits (615), Expect = 5.200e-71
Identity = 134/176 (76.14%), Postives = 142/176 (80.68%), Query Frame = 1
Query:    1 MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR*DTTSANRRLCQ 528
            +HERRLALIDREKTQQLALI NGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPM EDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAG+          ++  + G                ++ AENTYWKRDQDLMEEAIRTVTMLNR DTTSA+ RLCQ
Sbjct:  101 IHERRLALIDREKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGT----------VFDREEGEGFV----------HHQICAENTYWKRDQDLMEEAIRTVTMLNRCDTTSADCRLCQ 256          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A835YN01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN01_9STRA)

HSP 1 Score: 214 bits (544), Expect = 4.210e-67
Identity = 106/118 (89.83%), Postives = 113/118 (95.76%), Query Frame = 1
Query:  139 RVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 492
            +  +PPAHDDGALIVARPM EDDPSV TPLAQVAH+GPEISMHSVAAEMGVRIKAG+ECLIGKKVKALYAIKYGTAAAAAIPKRN+PFRG++FAENTYWKRDQDLMEEAI TVTMLNR
Sbjct:  120 QATEPPAHDDGALIVARPMSEDDPSVPTPLAQVAHQGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNIPFRGQIFAENTYWKRDQDLMEEAIHTVTMLNR 237          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A836CKR7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKR7_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.240e-42
Identity = 76/85 (89.41%), Postives = 80/85 (94.12%), Query Frame = 1
Query:    1 MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPE 255
            MHERRLALID EKTQQLALI NGFDL+GSFGVADARDR+AFGDL RRVVQPPAHDD ALIVARPM EDDP+VATPLAQVAHRGP+
Sbjct:  164 MHERRLALIDHEKTQQLALIKNGFDLVGSFGVADARDRMAFGDLARRVVQPPAHDDSALIVARPMSEDDPTVATPLAQVAHRGPK 248          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A835YX96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX96_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.870e-36
Identity = 77/153 (50.33%), Postives = 103/153 (67.32%), Query Frame = 1
Query:   19 ALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 477
            AL  ++   Q A+    ++LL + GVAD RDRI F D VRR V     D  A++ A  +  DDP+V TP  +  +RG EISMH+VA+EMGV+I   SE  IGKK++ALY  +YG AAAA+IPKR++ FRG++F  N YWKRD DLM  A+++V
Sbjct:  191 ALAAKKARAQFAV--ESYELLRTMGVADDRDRITFSDAVRRAVGDGGGDAEAVVEALAVGIDDPAVPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDRYGEAAAASIPKRSIEFRGQMFPANAYWKRDADLMRAAVQSV 341          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A835YWG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG0_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.800e-33
Identity = 68/138 (49.28%), Postives = 92/138 (66.67%), Query Frame = 1
Query:   64 NGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 477
            + +++L S G AD RDRI F D VRR+V       GA++ A  +  DDP+V T      +RG EISMHSV+++  +RI  G E  +G+ VKALY  +YG AAAA + KRNVPF G+++ ENTYW RD+DLM++AI  V
Sbjct:  189 DSYEMLRSMGAADDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAAAKMVKRNVPFHGQIYGENTYWARDEDLMKQAIVAV 326          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A835Z3L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L4_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.620e-32
Identity = 73/155 (47.10%), Postives = 99/155 (63.87%), Query Frame = 1
Query:   19 ALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDG--ALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 477
            A+  ++   Q A+   G++LL S G AD RD I F D VRR V     D G  A++ AR +  DDP++ TP     +RG EISMH+VA EM V+I    E  IGK++KALY  +YG AAAA IP RN+ FRG+++  N+YW RD DLM+ A+++V
Sbjct:  173 AIATKKARAQFAV--EGYELLRSMGAADHRDCITFSDAVRRAVT----DGGGAAVVEARALAADDPTIPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAANIPTRNIEFRGQIWPANSYWARDADLMKRAVQSV 321          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A836CFR2_9STRA (KilA-N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFR2_9STRA)

HSP 1 Score: 117 bits (293), Expect = 7.450e-28
Identity = 77/163 (47.24%), Postives = 100/163 (61.35%), Query Frame = 1
Query:    1 MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGAL--IVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRI--KAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 477
            M ERR     +++ + L +I  G DL+ S G  D RD IAF DLVR  +   A   GAL   +   + +  P V TP    + RG EISMH+VAAE GVRI  +AG+   +GK+++ALY  KYG  AA  IPKR+  FRGK F+ENTY+ RD+DL+  AIR V
Sbjct:  256 MSERRAEAAVKKRKRDLEVIKEGHDLMQSIGDLDERDIIAFKDLVRTALT--ATGIGALQDAIVVAVADPGPHVPTPQCPSSVRGAEISMHTVAAEAGVRIGERAGA---VGKRIRALYRAKYGDDAAQGIPKRSTFFRGKPFSENTYFMRDKDLITTAIREV 413          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A836C7W8_9STRA (tRNA pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7W8_9STRA)

HSP 1 Score: 568 bits (1463), Expect = 1.360e-203
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 1
Query:    1 MREARRRGGSGGAFDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYPPMEDILAAAALYAENRAAALQDGQLQGEAADTDDEEGCLSDRETAIRL 930
            MREARRRGGSGGAFDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYPPMEDILAAAALYAENRAAALQDGQLQGEAADTDDEEGCLSDRETAIRL
Sbjct:    1 MREARRRGGSGGAFDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYPPMEDILAAAALYAENRAAALQDGQLQGEAADTDDEEGCLSDRETAIRL 310          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A4R2KKI8_9RHOB (tRNA pseudouridine synthase A n=1 Tax=Rhodovulum euryhalinum TaxID=35805 RepID=A0A4R2KKI8_9RHOB)

HSP 1 Score: 112 bits (281), Expect = 8.530e-26
Identity = 82/243 (33.74%), Postives = 111/243 (45.68%), Query Frame = 1
Query:   55 LGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
            L +A+N+ L+     V ++D   V D FHAR  A  R Y++R+V    P                                    +  E GR WQVP PLDL  +RAAAA L G HDFT+FR + C  KSP++ I+  ++E                 +G P  Q     +R RSFL+ QVR++VG               +++VGAG  S  ++ A L ARDR+   P  PPHGLYL  V Y
Sbjct:   75 LTQALNYHLKPA--PVAVIDCARVEDDFHARFSAIERRYLFRLVARRAP------------------------------------MTLELGRVWQVPHPLDLAPMRAAAAHLVGRHDFTTFRASICQAKSPVKTIDALEIEE----------------TGFPGGQEFRFRLRARSFLHNQVRSIVGT--------------LERVGAGAWSPGQVRAALDARDRAACGPVCPPHGLYLAAVGY 249          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: R6J3M6_9PROT (tRNA pseudouridine synthase A n=1 Tax=Azospirillum sp. CAG:239 TaxID=1262705 RepID=R6J3M6_9PROT)

HSP 1 Score: 112 bits (281), Expect = 4.140e-25
Identity = 80/243 (32.92%), Postives = 110/243 (45.27%), Query Frame = 1
Query:   55 LGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
            L  A+N  LR     V ++ +E V   FHAR  A GR Y+YRI++   PA                                    + E+ R W VPVPLD+E++R  A  L G HDF+SFR AAC  KSP++ +++ D+E  G                    + +   V  RSFL+ QVRNMVG               ++ VG G +  D++  +L A+DR  A P AP  GLYL +V Y
Sbjct:  166 LREAMNARLRDMEAPVCVISVEKVGQDFHARFSAKGRGYLYRILNRRAPA------------------------------------VLEKNRVWWVPVPLDVEKMREGAKYLLGHHDFSSFRAAACQAKSPIKTLDKLDIEVFG--------------------EEIRFIVEARSFLHHQVRNMVGT--------------LKMVGDGHLQPDDVKRILEAKDRKAAGPTAPACGLYLSKVVY 338          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: R6HT74_9PROT (tRNA pseudouridine synthase A n=3 Tax=Azospirillum TaxID=191 RepID=R6HT74_9PROT)

HSP 1 Score: 110 bits (276), Expect = 6.200e-25
Identity = 79/243 (32.51%), Postives = 113/243 (46.50%), Query Frame = 1
Query:   55 LGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
            L  A+N  LR+    V ++ +E V + FHAR  A GR Y+YRI++   PA                                    + E+ R W VPVPLD+E++R  A  L G HDF+SFR AAC  KSP++ ++R D+E RG                    + +   V  RSFL+ QVRNMVG               ++ VG G +  +++  +L A++R+ A   AP  GLYL +V Y
Sbjct:  100 LREAINARLREMEAPVSVIAVEKVGNDFHARFSARGRGYLYRILNRRAPA------------------------------------VLEKNRVWWVPVPLDVEKMREGAGYLIGHHDFSSFRAAACQAKSPVKTLDRLDIEVRG--------------------EEIHFIVEARSFLHHQVRNMVGT--------------LKMVGDGHLHPEDVKRILEAKNRAAAGVNAPACGLYLTKVVY 272          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: G7Z9Q7_AZOL4 (tRNA pseudouridine synthase A n=23 Tax=Azospirillum TaxID=191 RepID=G7Z9Q7_AZOL4)

HSP 1 Score: 109 bits (273), Expect = 9.340e-25
Identity = 82/248 (33.06%), Postives = 108/248 (43.55%), Query Frame = 1
Query:   40 FDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
            F    L  A+N  L+     + ++++E V   FHAR  + GR YVYRIV+   P                                    L  + GRAW V  PLD E + AAA  L G HDFTSFR A C  KSP++ ++R DVE +G  +                     +    RSFL+ QVRNMVG               ++ VGAG  S+D++   L ARDR+ A P  PP GLY +   Y
Sbjct:   70 FTGLKLRDALNFHLKPA--PIAVLEVEAVTGDFHARLTSTGRAYVYRIVNRRAP------------------------------------LALDAGRAWHVTRPLDAEAMHAAAQVLVGQHDFTSFRAALCQAKSPVKTLDRLDVERQGDEIR--------------------VHAAARSFLHHQVRNMVGT--------------LELVGAGKWSVDDVRRALEARDRAKAGPTCPPDGLYFKLARY 245          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A2S2CPS6_9PROT (tRNA pseudouridine synthase A n=1 Tax=Azospirillum thermophilum TaxID=2202148 RepID=A0A2S2CPS6_9PROT)

HSP 1 Score: 108 bits (271), Expect = 1.820e-24
Identity = 82/240 (34.17%), Postives = 104/240 (43.33%), Query Frame = 1
Query:   64 AVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
            A+NH L+     V ++  E VPD FHAR    GR+YV+RIV+   P                                    L  + GRAW V  PLD E +  AA  L G HDFTSFR A C  KSP++ ++R +VE +G                      L +    RSFL+ QVRNMVG               ++ VGAG    D++   L ARDR+ A P APP GLY     Y
Sbjct:   78 ALNHHLKPA--PVAVLLAEEVPDDFHARLSCLGRSYVFRIVNRRAP------------------------------------LALDAGRAWHVQRPLDAEAMNLAARHLIGQHDFTSFRAALCQAKSPVKTLDRLEVERQG--------------------DELRIHAAARSFLHHQVRNMVGT--------------LELVGAGKWQPDDVRRALEARDRAKAGPTAPPDGLYFVSARY 245          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A366FWA2_9HYPH (tRNA pseudouridine synthase A n=1 Tax=Roseiarcus fermentans TaxID=1473586 RepID=A0A366FWA2_9HYPH)

HSP 1 Score: 108 bits (269), Expect = 3.530e-24
Identity = 81/230 (35.22%), Postives = 104/230 (45.22%), Query Frame = 1
Query:   94 HDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
            H V ++ +E V D F ARH A  R YVYR+V+   P                                    L  +RGRAW+V   LD+E +RAAA AL G HDFT+FR A C  KSP+R ++R DV   G                     ++T +V   SFL+RQVR+MVG+              +  VGAG  +  +L A L A +RS     AP HGLYL  V Y
Sbjct:   86 HPVAVLAVEPVADDFDARHSARARHYVYRVVNRRAP------------------------------------LALDRGRAWRVKASLDVEAMRAAARALIGRHDFTTFRDAQCQAKSPIRTLDRLDVARDG--------------------DAITFAVSALSFLHRQVRSMVGS--------------LIDVGAGRWTAADLAAALAAAERSRCGQVAPAHGLYLARVDY 245          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A1I6UGC8_9RHOB (tRNA pseudouridine synthase A n=3 Tax=Sulfitobacter TaxID=60136 RepID=A0A1I6UGC8_9RHOB)

HSP 1 Score: 107 bits (266), Expect = 1.210e-23
Identity = 76/244 (31.15%), Postives = 106/244 (43.44%), Query Frame = 1
Query:   55 LGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYP 786
            L  A+N+ ++   H V +VD   V D FHAR  A  R Y++RI+    PA                                     F+ G  W V  PLDL+ +R  A+ L G HDFT+FR   C   +P++ ++R D+                     PA   +   VR RSFL+ QVR+ VG               +++VGAG +  D++  +L ARDR    P +PPHGLYL  V YP
Sbjct:   75 LSEALNYHMKP--HPVAIVDCVQVDDTFHARFSAQERRYLFRILMRRAPAT------------------------------------FQAGLVWNVKKPLDLDAMREGASHLLGQHDFTTFRSTICQSMTPVKTVDRLDMNL----------------VDTPAGPEVHFDVRARSFLHNQVRSFVGT--------------LERVGAGSLRPDDVKTMLEARDRQACGPVSPPHGLYLSHVGYP 250          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A7W6GFF0_9HYPH (tRNA pseudouridine synthase A n=1 Tax=Hansschlegelia beijingensis TaxID=1133344 RepID=A0A7W6GFF0_9HYPH)

HSP 1 Score: 106 bits (265), Expect = 1.620e-23
Identity = 85/241 (35.27%), Postives = 103/241 (42.74%), Query Frame = 1
Query:   64 AVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYP 786
            A N  LR   H V +++   VP+AF AR  A  R YVYRIV    P                                    L  + GRAW+VP  LD+  + AAA  L G HDFT+FR AAC   SPLR ++R DVE  G  V                     +S   RSFL+ QVR+M G+              + QVG G  S D+L   L   DRS   P APP GL L +V YP
Sbjct:   78 AANAHLRP--HPVAVLEASAVPEAFDARFSAIRRHYVYRIVDRRPP------------------------------------LALDLGRAWRVPKRLDVAAMDAAAKRLLGRHDFTTFRSAACQASSPLRTLDRLDVERSGDAVL--------------------ISTNARSFLHNQVRSMAGS--------------LVQVGLGRWSADDLATALARADRSACGPVAPPDGLTLVQVDYP 246          
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A2S6Q608_9PROT (tRNA pseudouridine synthase A n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q608_9PROT)

HSP 1 Score: 106 bits (264), Expect = 2.300e-23
Identity = 82/244 (33.61%), Postives = 109/244 (44.67%), Query Frame = 1
Query:   64 AVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYPPME 795
            A+N  +R E+  + + D   V   FHAR  A  RTY+YRI++            PR                             E GR W VP+PLD + + AAA AL G H+FTSFR A C  KSP+R IE   V  +G  +                     + VR +SFL+ Q+RN  G+              ++ VG+   +  +L+A L A DRS A P APP GLYL EV YP M+
Sbjct:   78 ALNAHMRNEQ--IVVTDAVQVMPNFHARISAVRRTYLYRILNRR----------PRP--------------------------TLEAGRVWHVPLPLDTKAMHAAAQALVGRHNFTSFRAAMCQAKSPVRTIEELSVIRKGDEIQ--------------------IHVRAQSFLHHQIRNFAGS--------------LELVGSRKWTAADLLAALAAEDRSAAGPTAPPDGLYLVEVEYPNMD 249          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A836CN02_9STRA5.200e-110100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1W0_9STRA2.040e-10296.34Uncharacterized protein n=8 Tax=Tribonema minus Ta... [more]
A0A835ZAN0_9STRA2.600e-8087.90Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CBT4_9STRA5.200e-7176.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YN01_9STRA4.210e-6789.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CKR7_9STRA1.240e-4289.41Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YX96_9STRA2.870e-3650.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWG0_9STRA3.800e-3349.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3L4_9STRA3.620e-3247.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFR2_9STRA7.450e-2847.24KilA-N domain-containing protein n=1 Tax=Tribonema... [more]

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BLAST of jgi.p|Trimin1|351980 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C7W8_9STRA1.360e-203100.00tRNA pseudouridine synthase n=1 Tax=Tribonema minu... [more]
A0A4R2KKI8_9RHOB8.530e-2633.74tRNA pseudouridine synthase A n=1 Tax=Rhodovulum e... [more]
R6J3M6_9PROT4.140e-2532.92tRNA pseudouridine synthase A n=1 Tax=Azospirillum... [more]
R6HT74_9PROT6.200e-2532.51tRNA pseudouridine synthase A n=3 Tax=Azospirillum... [more]
G7Z9Q7_AZOL49.340e-2533.06tRNA pseudouridine synthase A n=23 Tax=Azospirillu... [more]
A0A2S2CPS6_9PROT1.820e-2434.17tRNA pseudouridine synthase A n=1 Tax=Azospirillum... [more]
A0A366FWA2_9HYPH3.530e-2435.22tRNA pseudouridine synthase A n=1 Tax=Roseiarcus f... [more]
A0A1I6UGC8_9RHOB1.210e-2331.15tRNA pseudouridine synthase A n=3 Tax=Sulfitobacte... [more]
A0A7W6GFF0_9HYPH1.620e-2335.27tRNA pseudouridine synthase A n=1 Tax=Hansschlegel... [more]
A0A2S6Q608_9PROT2.300e-2333.61tRNA pseudouridine synthase A n=1 Tax=Alphaproteob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_104contigContig_104:483940..484501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351980|estExt_Genemark1.C_Ctg_1040075
Max annot lvl2759|Eukaryota
EggNOG OGs2EUDG@1|root,2SWJG@2759|Eukaryota
Evalue5.57e-11
Seed ortholog2880.D8LPL9
Hectar predicted targeting categoryother localisation
TranscriptId352302
TrackFilteredModels1
ProteinId351980
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351980gene_10243Tribonema minus UTEX_B_3156 geneContig_104 483940..484501 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10243_1exon_10243_1Tribonema minus UTEX_B_3156 exonContig_104 483940..484501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10243CDS_10243Tribonema minus UTEX_B_3156 CDSContig_104 483940..484434 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10243UTR3_10243Tribonema minus UTEX_B_3156 three_prime_UTRContig_104 484435..484501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351980Trimin1|351980|estExt_Genemark1.C_Ctg_1040075Tribonema minus UTEX_B_3156 polypeptideContig_104 483940..484434 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10243 ID=mRNA_10243|Name=jgi.p|Trimin1|351980|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=562bp|location=Sequence derived from alignment at Contig_104:483940..484501+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGAGCGCAGACTGGCGCTGATCGACCGTGAGAAGACTCAGCAGCT
GGCTTTGATCAACAATGGTTTTGACCTCCTCGGCAGTTTCGGTGTCGCTG
ACGCGCGTGACAGGATCGCCTTCGGAGACCTGGTGCGCCGCGTTGTACAG
CCCCCTGCACATGACGACGGCGCACTCATTGTCGCACGGCCGATGTGCGA
GGATGACCCGAGCGTGGCGACGCCCTTGGCGCAGGTTGCACACCGAGGCC
CCGAAATAAGCATGCACTCGGTCGCAGCCGAGATGGGTGTCCGCATCAAG
GCAGGCTCCGAGTGTTTGATCGGGAAGAAGGTGAAGGCTTTGTACGCCAT
CAAGTACGGCACAGCGGCGGCGGCGGCGATCCCGAAGCGAAATGTTCCTT
TTCGGGGCAAGGTATTCGCTGAGAACACATACTGGAAGCGCGATCAGGAC
CTCATGGAGGAGGCGATCCGCACGGTAACCATGCTGAACCGCTGAGACAC
AACAAGTGCCAATCGTCGACTCTGTCAGGTTGCCTGTGCAGTGCGGGTCC
GAGTCGTCCTGG
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protein sequence of jgi.p|Trimin1|351980

>Trimin1|351980|estExt_Genemark1.C_Ctg_1040075 ID=Trimin1|351980|estExt_Genemark1.C_Ctg_1040075|Name=jgi.p|Trimin1|351980|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=165bp
MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQ
PPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIK
AGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQD
LMEEAIRTVTMLNR*
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mRNA from alignment at Contig_104:483940..484501+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10243 ID=mRNA_10243|Name=jgi.p|Trimin1|351980|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=562bp|location=Sequence derived from alignment at Contig_104:483940..484501+ (Tribonema minus UTEX_B_3156 )
ATGCATGAGCGCAGACTGGCGCTGATCGACCGTGAGAAGACTCAGCAGCT GGCTTTGATCAACAATGGTTTTGACCTCCTCGGCAGTTTCGGTGTCGCTG ACGCGCGTGACAGGATCGCCTTCGGAGACCTGGTGCGCCGCGTTGTACAG CCCCCTGCACATGACGACGGCGCACTCATTGTCGCACGGCCGATGTGCGA GGATGACCCGAGCGTGGCGACGCCCTTGGCGCAGGTTGCACACCGAGGCC CCGAAATAAGCATGCACTCGGTCGCAGCCGAGATGGGTGTCCGCATCAAG GCAGGCTCCGAGTGTTTGATCGGGAAGAAGGTGAAGGCTTTGTACGCCAT CAAGTACGGCACAGCGGCGGCGGCGGCGATCCCGAAGCGAAATGTTCCTT TTCGGGGCAAGGTATTCGCTGAGAACACATACTGGAAGCGCGATCAGGAC CTCATGGAGGAGGCGATCCGCACGGTAACCATGCTGAACCGCTGAGACAC AACAAGTGCCAATCGTCGACTCTGTCAGGTTGCCTGTGCAGTGCGGGTCC GAGTCGTCCTGG
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Coding sequence (CDS) from alignment at Contig_104:483940..484501+

>mRNA_10243 ID=mRNA_10243|Name=jgi.p|Trimin1|351980|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=495bp|location=Sequence derived from alignment at Contig_104:483940..484501+ (Tribonema minus UTEX_B_3156 )
ATGCATGAGCGCAGACTGGCGCTGATCGACCGTGAGAAGACTCAGCAGCT
GGCTTTGATCAACAATGGTTTTGACCTCCTCGGCAGTTTCGGTGTCGCTG
ACGCGCGTGACAGGATCGCCTTCGGAGACCTGGTGCGCCGCGTTGTACAG
CCCCCTGCACATGACGACGGCGCACTCATTGTCGCACGGCCGATGTGCGA
GGATGACCCGAGCGTGGCGACGCCCTTGGCGCAGGTTGCACACCGAGGCC
CCGAAATAAGCATGCACTCGGTCGCAGCCGAGATGGGTGTCCGCATCAAG
GCAGGCTCCGAGTGTTTGATCGGGAAGAAGGTGAAGGCTTTGTACGCCAT
CAAGTACGGCACAGCGGCGGCGGCGGCGATCCCGAAGCGAAATGTTCCTT
TTCGGGGCAAGGTATTCGCTGAGAACACATACTGGAAGCGCGATCAGGAC
CTCATGGAGGAGGCGATCCGCACGGTAACCATGCTGAACCGCTGA
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