mRNA_10243 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A836CN02_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN02_9STRA) HSP 1 Score: 320 bits (819), Expect = 5.200e-110 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1
Query: 1 MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 492
MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR
Sbjct: 1 MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 164
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A835Z1W0_9STRA (Uncharacterized protein n=8 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W0_9STRA) HSP 1 Score: 306 bits (785), Expect = 2.040e-102 Identity = 158/164 (96.34%), Postives = 160/164 (97.56%), Query Frame = 1
Query: 1 MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 492
MHERRLALIDREKTQQLALI NGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHD GALIVARPM EDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAG+ECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRT T+LNR
Sbjct: 164 MHERRLALIDREKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDAGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTATLLNR 327
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A835ZAN0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN0_9STRA) HSP 1 Score: 267 bits (682), Expect = 2.600e-80 Identity = 138/157 (87.90%), Postives = 146/157 (92.99%), Query Frame = 1
Query: 88 FGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR*DTTSANRRLCQVACAVRVRVV 558
FGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPM EDDPSVATP A VAHRGPEISM SVAAEMGVRIKAG+ECLIGKKVKALYAIKYGTAAAAAIPKRN+ FRG++FAENTYWKR+QD MEEAI TVTMLNR DTTSA+ RLCQVACA R+ +V
Sbjct: 291 FGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPSAHVAHRGPEISMQSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNITFRGQIFAENTYWKRNQDHMEEAISTVTMLNRRDTTSADCRLCQVACAGRIVLV 447
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A836CBT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT4_9STRA) HSP 1 Score: 241 bits (615), Expect = 5.200e-71 Identity = 134/176 (76.14%), Postives = 142/176 (80.68%), Query Frame = 1
Query: 1 MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR*DTTSANRRLCQ 528
+HERRLALIDREKTQQLALI NGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPM EDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAG+ ++ + G ++ AENTYWKRDQDLMEEAIRTVTMLNR DTTSA+ RLCQ
Sbjct: 101 IHERRLALIDREKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGT----------VFDREEGEGFV----------HHQICAENTYWKRDQDLMEEAIRTVTMLNRCDTTSADCRLCQ 256
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A835YN01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN01_9STRA) HSP 1 Score: 214 bits (544), Expect = 4.210e-67 Identity = 106/118 (89.83%), Postives = 113/118 (95.76%), Query Frame = 1
Query: 139 RVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 492
+ +PPAHDDGALIVARPM EDDPSV TPLAQVAH+GPEISMHSVAAEMGVRIKAG+ECLIGKKVKALYAIKYGTAAAAAIPKRN+PFRG++FAENTYWKRDQDLMEEAI TVTMLNR
Sbjct: 120 QATEPPAHDDGALIVARPMSEDDPSVPTPLAQVAHQGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNIPFRGQIFAENTYWKRDQDLMEEAIHTVTMLNR 237
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A836CKR7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKR7_9STRA) HSP 1 Score: 152 bits (383), Expect = 1.240e-42 Identity = 76/85 (89.41%), Postives = 80/85 (94.12%), Query Frame = 1
Query: 1 MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPE 255
MHERRLALID EKTQQLALI NGFDL+GSFGVADARDR+AFGDL RRVVQPPAHDD ALIVARPM EDDP+VATPLAQVAHRGP+
Sbjct: 164 MHERRLALIDHEKTQQLALIKNGFDLVGSFGVADARDRMAFGDLARRVVQPPAHDDSALIVARPMSEDDPTVATPLAQVAHRGPK 248
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A835YX96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX96_9STRA) HSP 1 Score: 138 bits (347), Expect = 2.870e-36 Identity = 77/153 (50.33%), Postives = 103/153 (67.32%), Query Frame = 1
Query: 19 ALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 477
AL ++ Q A+ ++LL + GVAD RDRI F D VRR V D A++ A + DDP+V TP + +RG EISMH+VA+EMGV+I SE IGKK++ALY +YG AAAA+IPKR++ FRG++F N YWKRD DLM A+++V
Sbjct: 191 ALAAKKARAQFAV--ESYELLRTMGVADDRDRITFSDAVRRAVGDGGGDAEAVVEALAVGIDDPAVPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDRYGEAAAASIPKRSIEFRGQMFPANAYWKRDADLMRAAVQSV 341
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A835YWG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG0_9STRA) HSP 1 Score: 129 bits (325), Expect = 3.800e-33 Identity = 68/138 (49.28%), Postives = 92/138 (66.67%), Query Frame = 1
Query: 64 NGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 477
+ +++L S G AD RDRI F D VRR+V GA++ A + DDP+V T +RG EISMHSV+++ +RI G E +G+ VKALY +YG AAAA + KRNVPF G+++ ENTYW RD+DLM++AI V
Sbjct: 189 DSYEMLRSMGAADDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAAAKMVKRNVPFHGQIYGENTYWARDEDLMKQAIVAV 326
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A835Z3L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L4_9STRA) HSP 1 Score: 127 bits (318), Expect = 3.620e-32 Identity = 73/155 (47.10%), Postives = 99/155 (63.87%), Query Frame = 1
Query: 19 ALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDG--ALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 477
A+ ++ Q A+ G++LL S G AD RD I F D VRR V D G A++ AR + DDP++ TP +RG EISMH+VA EM V+I E IGK++KALY +YG AAAA IP RN+ FRG+++ N+YW RD DLM+ A+++V
Sbjct: 173 AIATKKARAQFAV--EGYELLRSMGAADHRDCITFSDAVRRAVT----DGGGAAVVEARALAADDPTIPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAANIPTRNIEFRGQIWPANSYWARDADLMKRAVQSV 321
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A836CFR2_9STRA (KilA-N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFR2_9STRA) HSP 1 Score: 117 bits (293), Expect = 7.450e-28 Identity = 77/163 (47.24%), Postives = 100/163 (61.35%), Query Frame = 1
Query: 1 MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGAL--IVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRI--KAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 477
M ERR +++ + L +I G DL+ S G D RD IAF DLVR + A GAL + + + P V TP + RG EISMH+VAAE GVRI +AG+ +GK+++ALY KYG AA IPKR+ FRGK F+ENTY+ RD+DL+ AIR V
Sbjct: 256 MSERRAEAAVKKRKRDLEVIKEGHDLMQSIGDLDERDIIAFKDLVRTALT--ATGIGALQDAIVVAVADPGPHVPTPQCPSSVRGAEISMHTVAAEAGVRIGERAGA---VGKRIRALYRAKYGDDAAQGIPKRSTFFRGKPFSENTYFMRDKDLITTAIREV 413
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A836C7W8_9STRA (tRNA pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7W8_9STRA) HSP 1 Score: 568 bits (1463), Expect = 1.360e-203 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 1
Query: 1 MREARRRGGSGGAFDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYPPMEDILAAAALYAENRAAALQDGQLQGEAADTDDEEGCLSDRETAIRL 930
MREARRRGGSGGAFDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYPPMEDILAAAALYAENRAAALQDGQLQGEAADTDDEEGCLSDRETAIRL
Sbjct: 1 MREARRRGGSGGAFDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYPPMEDILAAAALYAENRAAALQDGQLQGEAADTDDEEGCLSDRETAIRL 310
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A4R2KKI8_9RHOB (tRNA pseudouridine synthase A n=1 Tax=Rhodovulum euryhalinum TaxID=35805 RepID=A0A4R2KKI8_9RHOB) HSP 1 Score: 112 bits (281), Expect = 8.530e-26 Identity = 82/243 (33.74%), Postives = 111/243 (45.68%), Query Frame = 1
Query: 55 LGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
L +A+N+ L+ V ++D V D FHAR A R Y++R+V P + E GR WQVP PLDL +RAAAA L G HDFT+FR + C KSP++ I+ ++E +G P Q +R RSFL+ QVR++VG +++VGAG S ++ A L ARDR+ P PPHGLYL V Y
Sbjct: 75 LTQALNYHLKPA--PVAVIDCARVEDDFHARFSAIERRYLFRLVARRAP------------------------------------MTLELGRVWQVPHPLDLAPMRAAAAHLVGRHDFTTFRASICQAKSPVKTIDALEIEE----------------TGFPGGQEFRFRLRARSFLHNQVRSIVGT--------------LERVGAGAWSPGQVRAALDARDRAACGPVCPPHGLYLAAVGY 249
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: R6J3M6_9PROT (tRNA pseudouridine synthase A n=1 Tax=Azospirillum sp. CAG:239 TaxID=1262705 RepID=R6J3M6_9PROT) HSP 1 Score: 112 bits (281), Expect = 4.140e-25 Identity = 80/243 (32.92%), Postives = 110/243 (45.27%), Query Frame = 1
Query: 55 LGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
L A+N LR V ++ +E V FHAR A GR Y+YRI++ PA + E+ R W VPVPLD+E++R A L G HDF+SFR AAC KSP++ +++ D+E G + + V RSFL+ QVRNMVG ++ VG G + D++ +L A+DR A P AP GLYL +V Y
Sbjct: 166 LREAMNARLRDMEAPVCVISVEKVGQDFHARFSAKGRGYLYRILNRRAPA------------------------------------VLEKNRVWWVPVPLDVEKMREGAKYLLGHHDFSSFRAAACQAKSPIKTLDKLDIEVFG--------------------EEIRFIVEARSFLHHQVRNMVGT--------------LKMVGDGHLQPDDVKRILEAKDRKAAGPTAPACGLYLSKVVY 338
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: R6HT74_9PROT (tRNA pseudouridine synthase A n=3 Tax=Azospirillum TaxID=191 RepID=R6HT74_9PROT) HSP 1 Score: 110 bits (276), Expect = 6.200e-25 Identity = 79/243 (32.51%), Postives = 113/243 (46.50%), Query Frame = 1
Query: 55 LGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
L A+N LR+ V ++ +E V + FHAR A GR Y+YRI++ PA + E+ R W VPVPLD+E++R A L G HDF+SFR AAC KSP++ ++R D+E RG + + V RSFL+ QVRNMVG ++ VG G + +++ +L A++R+ A AP GLYL +V Y
Sbjct: 100 LREAINARLREMEAPVSVIAVEKVGNDFHARFSARGRGYLYRILNRRAPA------------------------------------VLEKNRVWWVPVPLDVEKMREGAGYLIGHHDFSSFRAAACQAKSPVKTLDRLDIEVRG--------------------EEIHFIVEARSFLHHQVRNMVGT--------------LKMVGDGHLHPEDVKRILEAKNRAAAGVNAPACGLYLTKVVY 272
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: G7Z9Q7_AZOL4 (tRNA pseudouridine synthase A n=23 Tax=Azospirillum TaxID=191 RepID=G7Z9Q7_AZOL4) HSP 1 Score: 109 bits (273), Expect = 9.340e-25 Identity = 82/248 (33.06%), Postives = 108/248 (43.55%), Query Frame = 1
Query: 40 FDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
F L A+N L+ + ++++E V FHAR + GR YVYRIV+ P L + GRAW V PLD E + AAA L G HDFTSFR A C KSP++ ++R DVE +G + + RSFL+ QVRNMVG ++ VGAG S+D++ L ARDR+ A P PP GLY + Y
Sbjct: 70 FTGLKLRDALNFHLKPA--PIAVLEVEAVTGDFHARLTSTGRAYVYRIVNRRAP------------------------------------LALDAGRAWHVTRPLDAEAMHAAAQVLVGQHDFTSFRAALCQAKSPVKTLDRLDVERQGDEIR--------------------VHAAARSFLHHQVRNMVGT--------------LELVGAGKWSVDDVRRALEARDRAKAGPTCPPDGLYFKLARY 245
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A2S2CPS6_9PROT (tRNA pseudouridine synthase A n=1 Tax=Azospirillum thermophilum TaxID=2202148 RepID=A0A2S2CPS6_9PROT) HSP 1 Score: 108 bits (271), Expect = 1.820e-24 Identity = 82/240 (34.17%), Postives = 104/240 (43.33%), Query Frame = 1
Query: 64 AVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
A+NH L+ V ++ E VPD FHAR GR+YV+RIV+ P L + GRAW V PLD E + AA L G HDFTSFR A C KSP++ ++R +VE +G L + RSFL+ QVRNMVG ++ VGAG D++ L ARDR+ A P APP GLY Y
Sbjct: 78 ALNHHLKPA--PVAVLLAEEVPDDFHARLSCLGRSYVFRIVNRRAP------------------------------------LALDAGRAWHVQRPLDAEAMNLAARHLIGQHDFTSFRAALCQAKSPVKTLDRLEVERQG--------------------DELRIHAAARSFLHHQVRNMVGT--------------LELVGAGKWQPDDVRRALEARDRAKAGPTAPPDGLYFVSARY 245
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A366FWA2_9HYPH (tRNA pseudouridine synthase A n=1 Tax=Roseiarcus fermentans TaxID=1473586 RepID=A0A366FWA2_9HYPH) HSP 1 Score: 108 bits (269), Expect = 3.530e-24 Identity = 81/230 (35.22%), Postives = 104/230 (45.22%), Query Frame = 1
Query: 94 HDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
H V ++ +E V D F ARH A R YVYR+V+ P L +RGRAW+V LD+E +RAAA AL G HDFT+FR A C KSP+R ++R DV G ++T +V SFL+RQVR+MVG+ + VGAG + +L A L A +RS AP HGLYL V Y
Sbjct: 86 HPVAVLAVEPVADDFDARHSARARHYVYRVVNRRAP------------------------------------LALDRGRAWRVKASLDVEAMRAAARALIGRHDFTTFRDAQCQAKSPIRTLDRLDVARDG--------------------DAITFAVSALSFLHRQVRSMVGS--------------LIDVGAGRWTAADLAAALAAAERSRCGQVAPAHGLYLARVDY 245
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A1I6UGC8_9RHOB (tRNA pseudouridine synthase A n=3 Tax=Sulfitobacter TaxID=60136 RepID=A0A1I6UGC8_9RHOB) HSP 1 Score: 107 bits (266), Expect = 1.210e-23 Identity = 76/244 (31.15%), Postives = 106/244 (43.44%), Query Frame = 1
Query: 55 LGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYP 786
L A+N+ ++ H V +VD V D FHAR A R Y++RI+ PA F+ G W V PLDL+ +R A+ L G HDFT+FR C +P++ ++R D+ PA + VR RSFL+ QVR+ VG +++VGAG + D++ +L ARDR P +PPHGLYL V YP
Sbjct: 75 LSEALNYHMKP--HPVAIVDCVQVDDTFHARFSAQERRYLFRILMRRAPAT------------------------------------FQAGLVWNVKKPLDLDAMREGASHLLGQHDFTTFRSTICQSMTPVKTVDRLDMNL----------------VDTPAGPEVHFDVRARSFLHNQVRSFVGT--------------LERVGAGSLRPDDVKTMLEARDRQACGPVSPPHGLYLSHVGYP 250
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A7W6GFF0_9HYPH (tRNA pseudouridine synthase A n=1 Tax=Hansschlegelia beijingensis TaxID=1133344 RepID=A0A7W6GFF0_9HYPH) HSP 1 Score: 106 bits (265), Expect = 1.620e-23 Identity = 85/241 (35.27%), Postives = 103/241 (42.74%), Query Frame = 1
Query: 64 AVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYP 786
A N LR H V +++ VP+AF AR A R YVYRIV P L + GRAW+VP LD+ + AAA L G HDFT+FR AAC SPLR ++R DVE G V +S RSFL+ QVR+M G+ + QVG G S D+L L DRS P APP GL L +V YP
Sbjct: 78 AANAHLRP--HPVAVLEASAVPEAFDARFSAIRRHYVYRIVDRRPP------------------------------------LALDLGRAWRVPKRLDVAAMDAAAKRLLGRHDFTTFRSAACQASSPLRTLDRLDVERSGDAVL--------------------ISTNARSFLHNQVRSMAGS--------------LVQVGLGRWSADDLATALARADRSACGPVAPPDGLTLVQVDYP 246
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Match: A0A2S6Q608_9PROT (tRNA pseudouridine synthase A n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q608_9PROT) HSP 1 Score: 106 bits (264), Expect = 2.300e-23 Identity = 82/244 (33.61%), Postives = 109/244 (44.67%), Query Frame = 1
Query: 64 AVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYPPME 795
A+N +R E+ + + D V FHAR A RTY+YRI++ PR E GR W VP+PLD + + AAA AL G H+FTSFR A C KSP+R IE V +G + + VR +SFL+ Q+RN G+ ++ VG+ + +L+A L A DRS A P APP GLYL EV YP M+
Sbjct: 78 ALNAHMRNEQ--IVVTDAVQVMPNFHARISAVRRTYLYRILNRR----------PRP--------------------------TLEAGRVWHVPLPLDTKAMHAAAQALVGRHNFTSFRAAMCQAKSPVRTIEELSVIRKGDEIQ--------------------IHVRAQSFLHHQIRNFAGS--------------LELVGSRKWTAADLLAALAAEDRSAAGPTAPPDGLYLVEVEYPNMD 249 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351980 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
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BLAST of jgi.p|Trimin1|351980 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10243 ID=mRNA_10243|Name=jgi.p|Trimin1|351980|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=562bp|location=Sequence derived from alignment at Contig_104:483940..484501+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCATGAGCGCAGACTGGCGCTGATCGACCGTGAGAAGACTCAGCAGCTback to top protein sequence of jgi.p|Trimin1|351980 >Trimin1|351980|estExt_Genemark1.C_Ctg_1040075 ID=Trimin1|351980|estExt_Genemark1.C_Ctg_1040075|Name=jgi.p|Trimin1|351980|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=165bp MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQback to top mRNA from alignment at Contig_104:483940..484501+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10243 ID=mRNA_10243|Name=jgi.p|Trimin1|351980|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=562bp|location=Sequence derived from alignment at Contig_104:483940..484501+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_104:483940..484501+ >mRNA_10243 ID=mRNA_10243|Name=jgi.p|Trimin1|351980|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=495bp|location=Sequence derived from alignment at Contig_104:483940..484501+ (Tribonema minus UTEX_B_3156 )back to top |