mRNA_10207 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351961
Unique NamemRNA_10207
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351961 vs. uniprot
Match: A0A835ZHM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM7_9STRA)

HSP 1 Score: 610 bits (1574), Expect = 1.860e-218
Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 1
Query:    1 MSRPGPAVWYHPDIDYSPPDXXXXXXXXXXXXXXXXXXXXXXXGAGRASTPVRVSGSRAVTPQRAVYAAPIAAAQEGRPSQHRGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGGVKTVYVSLAGGXXXXXXXXXXXXXXXXXVSMCAFVEATRVAQSEADRLRRAQLSDGHIRAAALTGGSNIESAARFGXXXXXXXXXSRILVKA 1125
            MSRPGPAVWYHPDIDYSPPDXXXXXXXXXXXXXXXXXXXXXXXGAGRASTPVRVSGSRAVTPQRAVYAAPIAAAQEGRPSQHRGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGGVKTVYVSLAGGXXXXXXXXXXXXXXXXXVSMCAFVEATRVAQSEADRLRRAQLSDGHIRAAALTGGSNIESAARFGXXXXXXXXXSRILVKA
Sbjct:    1 MSRPGPAVWYHPDIDYSPPDXXXXXXXXXXXXXXXXXXXXXXXGAGRASTPVRVSGSRAVTPQRAVYAAPIAAAQEGRPSQHRGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGGVKTVYVSLAGGXXXXXXXXXXXXXXXXXVSMCAFVEATRVAQSEADRLRRAQLSDGHIRAAALTGGSNIESAARFGXXXXXXXXXSRILVKA 375          
BLAST of jgi.p|Trimin1|351961 vs. uniprot
Match: D7FP96_ECTSI (R3H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP96_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.090e-28
Identity = 99/265 (37.36%), Postives = 135/265 (50.94%), Query Frame = 1
Query:  130 GAGRASTPVRVS---GSRAVTPQRAVY--AAPI----AAAQEGRPS-QHRGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAP---ALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTPLQLQ------------AGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGG 849
            GAGRA TP R++       + P   ++  AAP+    A  +EG    Q  GRR+QRRW NDN  G+ K + G       G A+       HL++  +WRSSLGDLV+D   A +R + R G  P P     + GSG + + G  WEDAEERF  + +RLRD+V ++L    L  ++  +E  L  F   + +    P  L  AL +P +++            A    G  L V L  SPFHRLLLHA CQY  L SKS+  + G
Sbjct:   98 GAGRAHTPQRLNRXXXXXXLRPSSILHTAAAPVQQSSATRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAH-EEGEAE-------HLTVKHTWRSSLGDLVSDPRAAEVRESFRNGMQPTPQKGGSAPGSGARHFTGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFTQTKQILTEMPSALRSALASPPKVEVRKXXXXXXXXXAEAGAGPTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETKRG 354          
BLAST of jgi.p|Trimin1|351961 vs. uniprot
Match: A0A8K1FEI2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEI2_PYTOL)

HSP 1 Score: 99.0 bits (245), Expect = 1.610e-19
Identity = 78/267 (29.21%), Postives = 132/267 (49.44%), Query Frame = 1
Query:  250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTH-WEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTP--DPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGGVKTVYVSLAGGXXXXXXXXXXXXXXXXXVSMCAFVEATRVAQSEA-------DRLRRAQLSDGH 1020
            G R+Q+RW ND+ FG +KA S             +  LM+H++L+V WRS+   L   E +  L+ A R+G      + +GS   ++R    W DAEE F RI +R R ++ +S +      ++ AVE  +L+F+  R LP      D L+  L  P++L    +   RL + L DS FHRL++H+ CQ++G+ S+++A +     + V  +                   +S+C F+  TR+ +  +       D  + ++ SDG+
Sbjct:  111 GVRKQQRWFNDHHFG-NKAAS-----------TRLEDLMEHMTLNVEWRSNFQKLAEPE-NKDLQVAFRKGRVQ---VQNGSNQPKWRRKDDWNDAEEMFTRIDRRARTLLMRSFNSFV--DFIEAVEHVVLHFVQWRELPSEIEITDGLSRVLAHPIELATVNENDVRLCIPLSDSAFHRLIVHSVCQFYGVRSRTEANRRFNTKIMVLKS-------PKKKFSQEQLEKISLCEFIRETRLGRHSSAVEDPLEDLTKSSECSDGY 352          
BLAST of jgi.p|Trimin1|351961 vs. uniprot
Match: A0A024GEX0_9STRA (R3H domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GEX0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 9.160e-15
Identity = 73/267 (27.34%), Postives = 126/267 (47.19%), Query Frame = 1
Query:  250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTP--DPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQG-GVKTVYVSLAGGXXXXXXXXXXXXXXXXXVSMCAFVEATRVAQSEADR-------LRRAQLSDGH 1020
            G+R Q+RWAND      + +            + +  LMQHL + V+WRS+   L  D     L+ A  +       +S  +  +  +  +W +AE  F R+ +R R ++++S+   +  +++ A+E T+L+F+  R  P        L + L +PL++         L ++L +SPFHRLL+HA CQ++GL SK++  Q    KT+ V                      +S+C F+  TRV   E ++        R ++ SDG+
Sbjct:   67 GKRNQKRWANDYHIENSEMLG-----------NNVEELMQHLHIQVNWRSNFQQLAKDRA---LQDAFLEAKVHPKPIS--TNCRNKKTGYWNEAEYMFRRMDRRARALLSKSI--ISFGSFLEAMEHTILHFVKWREAPSDLELMPALRKMLISPLEITESAFSVRSLRLSLPNSPFHRLLVHALCQFYGLQSKTEQNQEKSFKTIVV-------LQPQTEKMEKLNCTAISLCRFLLETRVPHHENNKEDSMEVSTRTSECSDGY 308          
BLAST of jgi.p|Trimin1|351961 vs. uniprot
Match: W4H8G5_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8G5_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.130e-14
Identity = 70/216 (32.41%), Postives = 107/216 (49.54%), Query Frame = 1
Query:  250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRG---THWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFIT-ARALP-----PTTPDPLAEALR----TPLQLQAGPKGGAR---------LGVALHDSPFHRLLLHAACQYHGLLSKS 831
            G+R Q R+ ND+ FG   A +             +  LM+H+S+ V W+S+  +L   E +  L  A R    P  A S+ S +  +R      W +A++ F R+ KR R ++  S    +++ YV AVE  +++F+   + LP     PT  + LA  +     TP+   +   GG           L V L +SPFHRLL+HA CQ++GLLSKS
Sbjct:  100 GKRSQNRYFNDHHFGNRAATA------------TLDELMEHMSVSVEWKSNFEELARPE-NQELAEAFRSVKEPTHARSNASQNGTHRAKPSVDWTEADDMFTRVDKRARSILLASF--VSMQEYVHAVEQVVVHFVQWNQVLPSEDFSPTLVNWLAAPITIDVVTPMVRDSKAAGGRAKPAKHDETVLVVPLLESPFHRLLIHATCQFYGLLSKS 300          
BLAST of jgi.p|Trimin1|351961 vs. uniprot
Match: W4H7Z2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H7Z2_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.910e-13
Identity = 67/210 (31.90%), Postives = 103/210 (49.05%), Query Frame = 1
Query:  268 RWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRG---THWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFIT-ARALP-----PTTPDPLAEALR----TPLQLQAGPKGGAR---------LGVALHDSPFHRLLLHAACQYHGLLSKS 831
            R+ ND+ FG   A +             +  LM+H+S+ V W+S+  +L   E +  L  A R    P  A S+ S +  +R      W +A++ F R+ KR R ++  S    +++ YV AVE  +++F+   + LP     PT  + LA  +     TP+   +   GG           L V L +SPFHRLL+HA CQ++GLLSKS
Sbjct:    5 RYFNDHHFGNRAATA------------TLDELMEHMSVSVEWKSNFEELARPE-NQELAEAFRSVKEPTHARSNASQNGTHRAKPSVDWTEADDMFTRVDKRARSILLASF--VSMQEYVHAVEQVVVHFVQWNQVLPSEDFSPTLVNWLAAPITIDVVTPMVRDSKAAGGRAKPAKHDETVLVVPLLESPFHRLLIHATCQFYGLLSKS 199          
BLAST of jgi.p|Trimin1|351961 vs. uniprot
Match: A0A6G0W807_9STRA (R3H-assoc domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W807_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.100e-13
Identity = 62/214 (28.97%), Postives = 99/214 (46.26%), Query Frame = 1
Query:  250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTH---WEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTPLQLQA-------GPKGGARLGVALH----------DSPFHRLLLHAACQYHGLLSKS 831
            G+R Q R+ ND+ FG   A +             +  LM+H+S+ V W+S+  +++A   +  L  A R    P  A S+   +  +RG     W +AE  F R+ KR R ++  +    +++ YV AVE  +++F+     P      L   L  P+ ++              R+  + H          DSPFHRLL+HA CQ++GL SKS
Sbjct:   99 GKRSQNRYFNDHHFGNRAATA------------TLEELMEHMSVSVEWKSNF-EILARPENQELAEAFRNVKEPTHARSNSKQNGTHRGKRNDDWTEAENMFTRVDKRARSILLATF--TSMQEYVEAVELVVVHFVQWNEAPSDISPMLLNWLAAPMTVETLTPMVREAKAASTRMKPSKHKETVLVLPLADSPFHRLLIHATCQFYGLHSKS 297          
BLAST of jgi.p|Trimin1|351961 vs. uniprot
Match: A0A067D2K7_SAPPC (R3H domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D2K7_SAPPC)

HSP 1 Score: 81.3 bits (199), Expect = 2.610e-13
Identity = 67/216 (31.02%), Postives = 107/216 (49.54%), Query Frame = 1
Query:  250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTH---WEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTP-DP-LAEALRTPLQ-LQAGP------KGGARLGVALH----------DSPFHRLLLHAACQYHGLLSKS 831
            GRR Q R+ ND+ FG   A +            ++  LM+H+++ V W+S+   L   E +A +  A R    P+ A S+ + +Q +R      W +A++ F RI +R R V+  S     +  Y+ A+E  +++F+    +  T   DP LA  L  P++ L+  P       GG+R   A H          +S +HRLL+HA CQ++GL SKS
Sbjct:   97 GRRTQNRYFNDHHFGNRAATA------------SLDELMEHMAISVDWKSNFQKLAQPENEA-IADAFRSVKEPSHARSNSNQNQTHRARRHDAWHEADDMFTRIDRRARSVLAASFDA--MHIYIQAIEDVIVHFVKWNEVMSTIELDPVLANMLSGPMRVLETTPVVRETKAGGSRTRPAKHKDSVLVLPLVESSYHRLLIHAVCQFYGLDSKS 297          
BLAST of jgi.p|Trimin1|351961 vs. uniprot
Match: F0WIQ4_9STRA (Uncharacterized protein AlNc14C113G6447 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WIQ4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.890e-13
Identity = 61/202 (30.20%), Postives = 102/202 (50.50%), Query Frame = 1
Query:  247 RGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTP--DPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQG 846
            +G+R Q RW NDN  G  + +            + M  +MQHL L V+WRS+  +L  D     L+ A  +       LS  S +++    +W +AE  F+R+ +R R ++++SL   + + ++ A E   L+FI  +  P        L + L +PL+          L + L +S FHRL++HA CQ++GL SK++  +G
Sbjct:   70 KGKRDQIRWMNDNHVGNPETMG-----------NNMEEMMQHLHLQVNWRSNFQELAKDHT---LQNAFLEAKVHPRPLSTKSRNKKI--GYWREAEYMFSRMDRRARALLSKSL--LSFKPFLEATEHATLHFIKWQEAPSDLELMPALCKMLVSPLETTESALSVKCLRIPLVNSSFHRLMVHALCQFYGLHSKTEQIEG 253          
BLAST of jgi.p|Trimin1|351961 vs. uniprot
Match: A0A024UVM4_9STRA (R3H-assoc domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UVM4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.490e-12
Identity = 64/216 (29.63%), Postives = 104/216 (48.15%), Query Frame = 1
Query:  250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRG---THWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFI------TARALPPTTPDPLAEALR----TPLQLQAGPKGGAR---------LGVALHDSPFHRLLLHAACQYHGLLSKS 831
            G+R Q R+ ND+ FG   A +             +  LM+H+++ V W+S+  +L   E +  L  A R    P  A ++   +  +R    T W +A++ F R+ KR R ++  S    +++ ++ AVE+ +++F+      +A  L P     LA  +     TP+   A   G            L V L +SPFHRLL+HA CQ++GL SKS
Sbjct:   98 GKRSQNRYFNDHHFGNRAATA------------TLEELMEHMNVSVDWKSNFEELARPE-NQELAEAFRNVKEPTHARTNAKQNGTHRAKPATDWTEADDMFTRVDKRARSILLSSF--VSMQEFIEAVESFVVHFVQWNEVQSANVLSPRLTSWLAAPMTIDIVTPMVRDAKAAGTRSKPAKHSETVLVVPLLESPFHRLLIHATCQFYGLNSKS 298          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351961 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835ZHM7_9STRA1.860e-218100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FP96_ECTSI1.090e-2837.36R3H domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A8K1FEI2_PYTOL1.610e-1929.21Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024GEX0_9STRA9.160e-1527.34R3H domain-containing protein n=2 Tax=Albugo candi... [more]
W4H8G5_9STRA1.130e-1432.41Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
W4H7Z2_9STRA1.910e-1331.90Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0W807_9STRA2.100e-1328.97R3H-assoc domain-containing protein n=1 Tax=Aphano... [more]
A0A067D2K7_SAPPC2.610e-1331.02R3H domain-containing protein n=2 Tax=Saprolegnia ... [more]
F0WIQ4_9STRA6.890e-1330.20Uncharacterized protein AlNc14C113G6447 n=1 Tax=Al... [more]
A0A024UVM4_9STRA1.490e-1229.63R3H-assoc domain-containing protein n=1 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_104contigContig_104:260779..263839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351961|estExt_Genemark1.C_Ctg_1040046
Max annot lvl2759|Eukaryota
EggNOG OGs28Q1N@1|root,2QWQC@2759|Eukaryota
Evalue1.79e-29
Seed ortholog2880.D7FP96
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSingle-stranded nucleic acid binding R3H
Ec32 orthologEc-08_000270.1
TranscriptId352283
TrackFilteredModels1
ProteinId351961
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351961gene_10207Tribonema minus UTEX_B_3156 geneContig_104 260779..263839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351961Trimin1|351961|estExt_Genemark1.C_Ctg_1040046Tribonema minus UTEX_B_3156 polypeptideContig_104 260779..263839 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10207_4exon_10207_4Tribonema minus UTEX_B_3156 exonContig_104 260779..261377 -
exon_10207_3exon_10207_3Tribonema minus UTEX_B_3156 exonContig_104 262339..262587 -
exon_10207_2exon_10207_2Tribonema minus UTEX_B_3156 exonContig_104 263087..263352 -
exon_10207_1exon_10207_1Tribonema minus UTEX_B_3156 exonContig_104 263826..263839 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10207CDS_10207Tribonema minus UTEX_B_3156 CDSContig_104 263826..263839 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10207 ID=mRNA_10207|Name=jgi.p|Trimin1|351961|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1128bp|location=Sequence derived from alignment at Contig_104:260779..263839- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGGCCGGGCCCCGCCGTCTGGTACCACCCGGACATCGACTACAG
CCCCCCAGACCCCCCTCCCGCCCCCCGCGACCCCGATGACGACGATGACA
GCCTGGCGCCAGTGCCGAGCACTGCAACTGGGGCAGGCAGGGCCTCTACG
CCCGTGCGTGTGAGCGGCAGCCGCGCAGTGACGCCGCAGCGCGCCGTGTA
CGCGGCGCCCATCGCGGCGGCGCAGGAAGGGCGGCCGTCACAGCACAGGG
GGCGGCGGCGGCAGCGGCGCTGGGCCAATGACAACTTCTTTGGCATCCAC
AAGGCCATCAGCGGCGGCGGCGGCGACGGCAGCAGCGGCGGCGCGGATGC
CATGTCATCGCTCATGCAGCACCTGAGCCTGGATGTCAGCTGGCGCAGCA
GCCTCGGCGACCTCGTCGCAGATGAAGTTGACGCTCCGCTGCGCACCGCC
GCGCGGCAGGGTGCTGCACCTGCTCCAGCGCTCAGCCACGGGAGCGGCCA
CCAGCAGTACCGCGGCACGCACTGGGAAGACGCCGAGGAACGGTTCGCGC
GCATTCCCAAGCGCCTGCGCGACGTGGTCACCCAGTCCCTGCACGGCGCG
ACGCTGCGCGCATATGTCGCCGCCGTGGAAGCCACCCTACTCTACTTCAT
CACCGCTCGTGCGCTCCCCCCTACAACCCCCGACCCCCTGGCGGAGGCCC
TCCGGACCCCCTTGCAGCTGCAGGCAGGCCCAAAGGGGGGGGCGCGCCTG
GGCGTCGCGTTGCACGACTCGCCGTTTCATCGCCTGCTGCTGCACGCGGC
GTGCCAGTACCACGGCCTCCTGAGCAAGAGCGATGCGGAACAGGGGGGCG
TGAAGACCGTGTACGTGTCGCTCGCTGGCGGCGGTGGCGGCGGCAGCGGC
GGTGGCGGCGGCGTGGCGGTGGCAGCAGCGGCGGTGAGCATGTGCGCATT
CGTGGAGGCGACGCGCGTGGCGCAGAGCGAGGCTGATAGGCTGCGGCGCG
CGCAGCTCAGCGACGGGCACATTCGCGCAGCAGCACTCACCGGCGGCAGC
AACATCGAGAGCGCTGCGCGTTTCGGCGGCGGCGGCGGCGGTGGCGGCGG
CGGCAGCCGTATACTGGTGAAAGCGTGA
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protein sequence of jgi.p|Trimin1|351961

>Trimin1|351961|estExt_Genemark1.C_Ctg_1040046 ID=Trimin1|351961|estExt_Genemark1.C_Ctg_1040046|Name=jgi.p|Trimin1|351961|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=376bp
MSRPGPAVWYHPDIDYSPPDPPPAPRDPDDDDDSLAPVPSTATGAGRAST
PVRVSGSRAVTPQRAVYAAPIAAAQEGRPSQHRGRRRQRRWANDNFFGIH
KAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTA
ARQGAAPAPALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGA
TLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTPLQLQAGPKGGARL
GVALHDSPFHRLLLHAACQYHGLLSKSDAEQGGVKTVYVSLAGGGGGGSG
GGGGVAVAAAAVSMCAFVEATRVAQSEADRLRRAQLSDGHIRAAALTGGS
NIESAARFGGGGGGGGGGSRILVKA*
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mRNA from alignment at Contig_104:260779..263839-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10207 ID=mRNA_10207|Name=jgi.p|Trimin1|351961|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3061bp|location=Sequence derived from alignment at Contig_104:260779..263839- (Tribonema minus UTEX_B_3156 )
ATGTCTCGGCCGGGGTGAGTCGGCACGAATGTTTTGCTTGCGTCTTGAAA CTTCAAGGAGCATCATGCACGCACCAGTTGACGAAAGCAATGCTTGAGTT GCAATGCCATGGCATGAGTCAATCAGGGGTCAAAGCAGACTGCATGAACA ACAGTCCGAGTTGCTGCCCCATTTCTGTCTCAACACTGCTTCTTCTCTGT TTCAGAGCCTCGTCCTGAATCAGCTGTAGATCAGAGAATGAATCTCCACC TGCCTGCGCGGGCATCACAATCCACAACGTTACTATTTGCCCTGCAGACC TGGATCAACGTCCCTCGCCCGGTGACAACTACACGTTTGCAGCATGGGAA CCAAACTGAACGCATAGAATCCAGCATTTGCTTTTTAATGTACCTGGACG CAGTTGCGTCGGCATCCTGACATGATGGGTATCACGCCTTGCACAGATCC AATCATCACACTCCTTCGCCGTCCCTACGCCGCGCAGCCCCGCCGTCTGG TACCACCCGGACATCGACTACAGCCCCCCAGACCCCCCTCCCGCCCCCCG CGACCCCGATGACGACGATGACAGCCTGGCGCCAGTGCCGAGCACTGCAA CTGGGGCAGGCAGGGCCTCTACGCCCGTGCGTGTGAGCGGCAGCCGCGCA GTGACGCCGCAGCGCGCCGTGTACGCGGCGCCCATCGCGGCGGCGCAGGA AGGGCGGCCGTCACAGCACAGGGGGCGGCGGCGGCAGCGGCGCTGGGCCA ATGGTATGTGTGCTTTCGTTCACTTCTCTAAAGCAATTCATGCAAATTCT CCCACCTGAAGTAAGGCCACACTGACTTCTCCCGTGGCGGTATGTGCTGG TATGCAGGTGCTGCAATATGGGGCAGAAATAGTCAAGCGGCAGCACTGGT GAGCCGACGGAATGCGCGTAGGGAGTACTTCAAGAACTCTTGACAACTCC AGCTGCAGTAGTAACAGTACTTCAAGAAACTTCAGGTTCAAGAAGTCCTG CTGCTGTCACCAATTATTGGTGACCAATAACAACAGCGTTTTTACGTGCC CCAAAACTGTACTGACCCTGGGCGTGTCCCAATAGCTGTGACGGTCCTTT GCGCATGAGCAGGCACCGCTTTGGTTTGCAAAAACCGAACAGCTTCTCCA CATCTCGCAAACAGCAATCGCTACACATGTCAGCTACTTGCATGGGCCAC AACGTGGTGCTCATCATTGCTGCCCTCAACGCGCCCCGCCGCCACGGCGC AGACAACTTCTTTGGCATCCACAAGGCCATCAGCGGCGGCGGCGGCGACG GCAGCAGCGGCGGCGCGGATGCCATGTCATCGCTCATGCAGCACCTGAGC CTGGATGTCAGCTGGCGCAGCAGCCTCGGCGACCTCGTCGCAGATGAAGT TGACGCTCCGCTGCGCACCGCCGCGCGGCAGGGTGCTGCACCTGCTCCAG CGCTCAGCCACGGGAGCGGCCACCAGCAGTACCGCGGCACGCACTGGGAA GGTAACCAGCGGAGCGTTGCGCGCCTGCTGCGGAGTGCAGCCTAGCCTGT GTTGTGTGCAGCGCTCATCCGCAGAAGCTGTGACGCTCAGCAGTTGCTGC CGGTTCCGCGGCATGCAGCAGGAGGGTGAGCATCGGGGACTTGTGCTGCT GCGCACGATAACCTTGCCAATCTTGCTCTGTTCAGGCTGAGAGAGGCCAG CATGGCAGAGTGGCACGCGCCCGCAGCTGAGCTGGGTCAGCACGTGACTG CAGCGTAGGAGCGTGAGATTCAGCGCATTGCGCTGCAAGCTGCAGAGGCC TGCCAGGGTTGTCTAGCACTCGTGCTCACGCAGCATTGCTTTGATTGTAA CAACAAACAGTGGCTCAATGAAGACTAGCTGATGCTGCTGTGGCAGGCTC GTGAGCCACAAGCGGTTGGCCGCACCTGCTCATTCAGGGTGCCAGTTGAG CTCTGCGTGGTGACATTGTGAGCTGCTCTGTGATTCTGCCTCACTCTGGA GCAAGCAGCATTCAATGCACACAATTCAACGCACATTGTTGCTGCACCAA GCACAGCTGCTGCAAATGCTCGAGCGCTCCACATGTCAACATCTTGATTC TGTTGGAGTTTGTGAAGCCAGGCATCCTGTAGGTGAATGTCATGACCAAT AGCTCGACCAACCTGCTCAGCTCCAAATGCATTCAACATTTGTTCCACCC CATGGAGTACCATCAACCCCCCCTTCTTTGCCGTCAGCTATGCGCCAAAC AGTGACCATCATTGTTGATGAGGCAAAGCGCATCTAGCTTATGTACAGCG AGCAGCAAAGGATCGCAGCTGCTGATCTGCACTTGTCTGGAGTCGTGCCT ACAGCAACATCTCAGCTACGAATGACCTCACAACTCATGCACTCGCCACG CGGCTCTACGCACTTCTCATCTTCCCCGCTCCCCTCCTCCGCCGCGCTCC TCTGCCCCGCAGACGCCGAGGAACGGTTCGCGCGCATTCCCAAGCGCCTG CGCGACGTGGTCACCCAGTCCCTGCACGGCGCGACGCTGCGCGCATATGT CGCCGCCGTGGAAGCCACCCTACTCTACTTCATCACCGCTCGTGCGCTCC CCCCTACAACCCCCGACCCCCTGGCGGAGGCCCTCCGGACCCCCTTGCAG CTGCAGGCAGGCCCAAAGGGGGGGGCGCGCCTGGGCGTCGCGTTGCACGA CTCGCCGTTTCATCGCCTGCTGCTGCACGCGGCGTGCCAGTACCACGGCC TCCTGAGCAAGAGCGATGCGGAACAGGGGGGCGTGAAGACCGTGTACGTG TCGCTCGCTGGCGGCGGTGGCGGCGGCAGCGGCGGTGGCGGCGGCGTGGC GGTGGCAGCAGCGGCGGTGAGCATGTGCGCATTCGTGGAGGCGACGCGCG TGGCGCAGAGCGAGGCTGATAGGCTGCGGCGCGCGCAGCTCAGCGACGGG CACATTCGCGCAGCAGCACTCACCGGCGGCAGCAACATCGAGAGCGCTGC GCGTTTCGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCAGCCGTATACTGG TGAAAGCGTGA
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Coding sequence (CDS) from alignment at Contig_104:260779..263839-

>mRNA_10207 ID=mRNA_10207|Name=jgi.p|Trimin1|351961|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1128bp|location=Sequence derived from alignment at Contig_104:260779..263839- (Tribonema minus UTEX_B_3156 )
ATGTCTCGGCCGGGCCCCGCCGTCTGGTACCACCCGGACATCGACTACAG
CCCCCCAGACCCCCCTCCCGCCCCCCGCGACCCCGATGACGACGATGACA
GCCTGGCGCCAGTGCCGAGCACTGCAACTGGGGCAGGCAGGGCCTCTACG
CCCGTGCGTGTGAGCGGCAGCCGCGCAGTGACGCCGCAGCGCGCCGTGTA
CGCGGCGCCCATCGCGGCGGCGCAGGAAGGGCGGCCGTCACAGCACAGGG
GGCGGCGGCGGCAGCGGCGCTGGGCCAATGACAACTTCTTTGGCATCCAC
AAGGCCATCAGCGGCGGCGGCGGCGACGGCAGCAGCGGCGGCGCGGATGC
CATGTCATCGCTCATGCAGCACCTGAGCCTGGATGTCAGCTGGCGCAGCA
GCCTCGGCGACCTCGTCGCAGATGAAGTTGACGCTCCGCTGCGCACCGCC
GCGCGGCAGGGTGCTGCACCTGCTCCAGCGCTCAGCCACGGGAGCGGCCA
CCAGCAGTACCGCGGCACGCACTGGGAAGACGCCGAGGAACGGTTCGCGC
GCATTCCCAAGCGCCTGCGCGACGTGGTCACCCAGTCCCTGCACGGCGCG
ACGCTGCGCGCATATGTCGCCGCCGTGGAAGCCACCCTACTCTACTTCAT
CACCGCTCGTGCGCTCCCCCCTACAACCCCCGACCCCCTGGCGGAGGCCC
TCCGGACCCCCTTGCAGCTGCAGGCAGGCCCAAAGGGGGGGGCGCGCCTG
GGCGTCGCGTTGCACGACTCGCCGTTTCATCGCCTGCTGCTGCACGCGGC
GTGCCAGTACCACGGCCTCCTGAGCAAGAGCGATGCGGAACAGGGGGGCG
TGAAGACCGTGTACGTGTCGCTCGCTGGCGGCGGTGGCGGCGGCAGCGGC
GGTGGCGGCGGCGTGGCGGTGGCAGCAGCGGCGGTGAGCATGTGCGCATT
CGTGGAGGCGACGCGCGTGGCGCAGAGCGAGGCTGATAGGCTGCGGCGCG
CGCAGCTCAGCGACGGGCACATTCGCGCAGCAGCACTCACCGGCGGCAGC
AACATCGAGAGCGCTGCGCGTTTCGGCGGCGGCGGCGGCGGTGGCGGCGG
CGGCAGCCGTATACTGGTGAAAGCGTGA
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