mRNA_10168 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351935
Unique NamemRNA_10168
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351935 vs. uniprot
Match: A0A835ZFW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW8_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.570e-32
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:  185 MEVAIAQLATVIKEELLFKLQELLATLHTGQRCYHDSVTWPLCSAFLDYDGRPCL 349
            MEVAIAQLATVIKEELLFKLQELLATLHTGQRCYHDSVTWPLCSAFLDYDGRPCL
Sbjct:    1 MEVAIAQLATVIKEELLFKLQELLATLHTGQRCYHDSVTWPLCSAFLDYDGRPCL 55
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BLAST of jgi.p|Trimin1|351935 vs. uniprot
Match: A0A835YQG3_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQG3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.060e-9
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 2 
Query:  221 KEELLFKLQELLATLHTGQRCYHDSVTWPLCSAFLDYDGRP 343
            ++ELLFKLQ L A+LH GQR YHD  T PLCS+FLDYDGRP
Sbjct:   31 QDELLFKLQVLFASLHVGQRRYHD--TRPLCSSFLDYDGRP 69
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351935 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZFW8_9STRA1.570e-32100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQG3_9STRA1.060e-973.17USP domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_104contigContig_104:34390..35013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351935|estExt_Genemark1.C_Ctg_1040007
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId352257
TrackFilteredModels1
ProteinId351935
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351935gene_10168Tribonema minus UTEX_B_3156 geneContig_104 34390..35013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351935Trimin1|351935|estExt_Genemark1.C_Ctg_1040007Tribonema minus UTEX_B_3156 polypeptideContig_104 34390..34829 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10168_2exon_10168_2Tribonema minus UTEX_B_3156 exonContig_104 34390..34515 -
exon_10168_1exon_10168_1Tribonema minus UTEX_B_3156 exonContig_104 34788..35013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10168CDS_10168Tribonema minus UTEX_B_3156 CDSContig_104 34788..34829 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10168UTR5_10168Tribonema minus UTEX_B_3156 five_prime_UTRContig_104 34830..35013 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10168 ID=mRNA_10168|Name=jgi.p|Trimin1|351935|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=352bp|location=Sequence derived from alignment at Contig_104:34390..35013- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTTCTAGTACGTCTGGCTTGATAATGTTTTGTACTTACGCTGCGGCTGCA
CGCTGGACCCCACGCGTTCATGGGAGGCGCCGAGGATGGCGCCAGCGATG
TTCTGCTTCAAGGCCTACCTACTTGGAGGATGAGGAGCAGTAGCTGCTGA
AGTGGCTGAGGGTTCGGTGCCACTCGTAGGCTGGATGGAGGTGGCGATTG
CGCAGCTGGCGACGGTGATCAAAGAGGAGCTGCTATTCAAGCTGCAGGAG
CTGCTCGCAACACTGCACACAGGGCAGCGCTGCTACCACGACAGTGTCAC
GTGGCCGTTGTGCTCTGCATTCCTCGACTATGACGGGCGCCCATGTCTCT
AG
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protein sequence of jgi.p|Trimin1|351935

>Trimin1|351935|estExt_Genemark1.C_Ctg_1040007 ID=Trimin1|351935|estExt_Genemark1.C_Ctg_1040007|Name=jgi.p|Trimin1|351935|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=56bp
MEVAIAQLATVIKEELLFKLQELLATLHTGQRCYHDSVTWPLCSAFLDYD
GRPCL*
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mRNA from alignment at Contig_104:34390..35013-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10168 ID=mRNA_10168|Name=jgi.p|Trimin1|351935|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=624bp|location=Sequence derived from alignment at Contig_104:34390..35013- (Tribonema minus UTEX_B_3156 )
GTTCTAGTACGTCTGGCTTGATAATGTTTTGTACTTACGCTGCGGCTGCA
CGCTGGACCCCACGCGTTCATGGGAGGCGCCGAGGATGGCGCCAGCGATG
TTCTGCTTCAAGGCCTACCTACTTGGAGGATGAGGAGCAGTAGCTGCTGA
AGTGGCTGAGGGTTCGGTGCCACTCGTAGGCTGGATGGAGGTGGCGATTG
CGCAGCTGGCGACGGTGATCAAAGAGGTATGCTGAACTGCTTGCTCGACA
AGGCCTGCTGGAGCAGCCTGCACTTACAACGCAACGCTATCAAATTACTC
TGGTCGAGGAAGAATGCTGCTACCGTGCTGTTGTGTCGGCCTTGTCTGAG
ACAATATGGTTTTAAGCGAATTTGTGCAAGCAAAATGCTCTGGGTCGAGG
ACGAATGCTGCCATCGTGCTGTTGTCAGCCTTGTCTGAGACAATCTGTTT
CTGATGGGTCCTGTGCTGCTTGATGCCGCTGCCGCCGCCTTGTCATAGGA
GCTGCTATTCAAGCTGCAGGAGCTGCTCGCAACACTGCACACAGGGCAGC
GCTGCTACCACGACAGTGTCACGTGGCCGTTGTGCTCTGCATTCCTCGAC
TATGACGGGCGCCCATGTCTCTAG
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Coding sequence (CDS) from alignment at Contig_104:34390..35013-

>mRNA_10168 ID=mRNA_10168|Name=jgi.p|Trimin1|351935|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=168bp|location=Sequence derived from alignment at Contig_104:34390..35013- (Tribonema minus UTEX_B_3156 )
ATGGAGGTGGCGATTGCGCAGCTGGCGACGGTGATCAAAGAGGAGCTGCT
ATTCAAGCTGCAGGAGCTGCTCGCAACACTGCACACAGGGCAGCGCTGCT
ACCACGACAGTGTCACGTGGCCGTTGTGCTCTGCATTCCTCGACTATGAC
GGGCGCCCATGTCTCTAG
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