mRNA_10128 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|82818 vs. uniprot
Match: A0A835YMB9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMB9_9STRA) HSP 1 Score: 332 bits (850), Expect = 1.140e-114 Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 3
Query: 6 MLGRAEGLGLTPLKRQPTRVRHELTEEQKQEVREAFELFDTEQTGTLSLYEAKVLLRALGFPVRKHDVLRAFHAVDPHADGAAVTLSHLYEMALPHYAGLDPQEEMLKAFRLFDADASGKISVADLRRVARELGEGLSEDDLQAMVDEFDRDQDGQISKDEFLAIMQNSNAF 521
MLGRAEGLGLTPLKRQPTRVRHELTEEQKQEVREAFELFDTEQTGTLSLYEAKVLLRALGFPVRKHDVLRAFHAVDPHADGAAVTLSHLYEMALPHYAGLDPQEEMLKAFRLFDADASGKISVADLRRVARELGEGLSEDDLQAMVDEFDRDQDGQISKDEFLAIMQNSNAF
Sbjct: 1 MLGRAEGLGLTPLKRQPTRVRHELTEEQKQEVREAFELFDTEQTGTLSLYEAKVLLRALGFPVRKHDVLRAFHAVDPHADGAAVTLSHLYEMALPHYAGLDPQEEMLKAFRLFDADASGKISVADLRRVARELGEGLSEDDLQAMVDEFDRDQDGQISKDEFLAIMQNSNAF 172
BLAST of jgi.p|Trimin1|82818 vs. uniprot
Match: A0A7S1U7H6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7H6_9STRA) HSP 1 Score: 191 bits (484), Expect = 1.380e-58 Identity = 101/172 (58.72%), Postives = 132/172 (76.74%), Query Frame = 3
Query: 6 MLGRAEGLGLTPLKRQPTRVRHELTEEQKQEVREAFELFDTEQTGTLSLYEAKVLLRALGFPVRKHDVLRAFHAVDPHADGAAVTLSHLYEMALPHYAGLDPQEEMLKAFRLFDADASGKISVADLRRVARELGEGLSEDDLQAMVDEFDRDQDGQISKDEFLAIMQNSNAF 521
ML RAE LGLTP R R+R LT++QKQE+REAF+LFD+++T ++ L+E KVL+RALGF VRK +VL+ H VDPH DG+ V E+ YA DP+EE+ KAFRLFD D +GKIS+ ++RR+ARELGE LSE++LQAM+DEFDRD DG+I++DEFL IM+ S+ F
Sbjct: 29 MLSRAENLGLTP-HRVRRRIRPMLTDDQKQELREAFDLFDSDKTSSIDLHELKVLMRALGFDVRKQEVLKLVHEVDPHNDGS-VNFDQFMEIMTDKYAERDPEEEIRKAFRLFDDDQTGKISIKNMRRIARELGENLSEEELQAMIDEFDRDNDGEINEDEFLYIMRESSDF 198
BLAST of jgi.p|Trimin1|82818 vs. uniprot
Match: A0A7S2BMG2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BMG2_9STRA) HSP 1 Score: 167 bits (423), Expect = 9.260e-50 Identity = 86/166 (51.81%), Postives = 120/166 (72.29%), Query Frame = 3
Query: 24 GLGLTPLKRQPTRVRHELTEEQKQEVREAFELFDTEQTGTLSLYEAKVLLRALGFPVRKHDVLRAFHAVDPHADGAAVTLSHLYEMALPHYAGLDPQEEMLKAFRLFDADASGKISVADLRRVARELGEGLSEDDLQAMVDEFDRDQDGQISKDEFLAIMQNSNAF 521
G L+P R R R ELTE+QKQE+REAFELFD ++ G++ L+E KVL+RALGF V+K DV++ H +DP +G V ++ Y DP EE+LKAF+LFD D SG IS+ ++R ++RELGE L++D+LQAM+DEFDRDQDG+I++ EF+ IM+ S+ +
Sbjct: 4 GFNLSP-NRGRRRARVELTEDQKQELREAFELFDADKKGSIDLHELKVLMRALGFQVKKQDVVKFVHEIDPQNEGM-VNFEQFMDLMTDRYTERDPDEEILKAFQLFDTDGSGSISLKNMRNISRELGENLADDELQAMIDEFDRDQDGEINQAEFMYIMKQSSVY 167
BLAST of jgi.p|Trimin1|82818 vs. uniprot
Match: A0A7S3GV94_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GV94_9STRA) HSP 1 Score: 167 bits (422), Expect = 1.120e-49 Identity = 86/154 (55.84%), Postives = 118/154 (76.62%), Query Frame = 3
Query: 60 RVRHELTEEQKQEVREAFELFDTEQTGTLSLYEAKVLLRALGFPVRKHDVLRAFHAVDPHADGAAVTLSHLYEMALPHYAGLDPQEEMLKAFRLFDADASGKISVADLRRVARELGEGLSEDDLQAMVDEFDRDQDGQISKDEFLAIMQNSNAF 521
+++ ELTE+QKQE+REAFELFD +TG++ L+E KVL+RALGF V+K +V++ H VDP G+ V E+ YA DP+EE+ KAF+LFD D +G+I++ +++RVARELGE LSE++LQAM+DEFDRDQDG+IS DEFL IM+ S +
Sbjct: 10 KLKPELTEDQKQELREAFELFDANKTGSIDLHELKVLMRALGFDVKKPEVVKMVHDVDPSNVGS-VDYEQFLEIMSDRYASRDPEEEIRKAFQLFDDDHTGRITLKNMKRVARELGENLSEEELQAMIDEFDRDQDGEISNDEFLYIMKQSTMY 162
BLAST of jgi.p|Trimin1|82818 vs. uniprot
Match: A0A812R5A4_SYMMI (Calmodulin n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812R5A4_SYMMI) HSP 1 Score: 166 bits (420), Expect = 1.700e-49 Identity = 84/150 (56.00%), Postives = 117/150 (78.00%), Query Frame = 3
Query: 72 ELTEEQKQEVREAFELFDTEQTGTLSLYEAKVLLRALGFPVRKHDVLRAFHAVDPHADGAAVTLSHLYEMALPHYAGLDPQEEMLKAFRLFDADASGKISVADLRRVARELGEGLSEDDLQAMVDEFDRDQDGQISKDEFLAIMQNSNAF 521
+L+++QK E+REAFELFD ++TG++ L+E KVL+RALGF V+K D++R H VDP+ G+ V E+ YA +P+EE++KAF+LFD D SG+IS+ +++RVARELGE LSED+LQAM+DEFDRDQDG+IS DEF+ IM+ S +
Sbjct: 5 DLSDDQKLELREAFELFDADKTGSIDLHELKVLMRALGFDVKKPDIVRMVHDVDPNNSGS-VDYPQFLEIMTDRYAERNPEEEIVKAFQLFDDDHSGRISLRNMKRVARELGENLSEDELQAMIDEFDRDQDGEISADEFMYIMKQSTMY 153
BLAST of jgi.p|Trimin1|82818 vs. uniprot
Match: A0A6S9FI83_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FI83_HETAK) HSP 1 Score: 166 bits (421), Expect = 2.310e-49 Identity = 86/152 (56.58%), Postives = 116/152 (76.32%), Query Frame = 3
Query: 66 RHELTEEQKQEVREAFELFDTEQTGTLSLYEAKVLLRALGFPVRKHDVLRAFHAVDPHADGAAVTLSHLYEMALPHYAGLDPQEEMLKAFRLFDADASGKISVADLRRVARELGEGLSEDDLQAMVDEFDRDQDGQISKDEFLAIMQNSNAF 521
R +LTE++K E++EAF LFD +TG++ L+E KVL+RALGFPV+K +VL+ H VDPH DG V + E+ YA DP EE+LKAF LFD D+SG IS ++RRVARELGE L ++++QAM+DEFDRDQDG+IS+DEF +IM+ S+ +
Sbjct: 24 RIDLTEDEKIELKEAFTLFDANKTGSIDLHELKVLIRALGFPVKKQEVLKMVHDVDPHNDGF-VDMDTYMEIMQDKYALRDPDEEILKAFALFDDDSSGFISAKNMRRVARELGENLGDEEIQAMIDEFDRDQDGEISRDEFKSIMKQSSMY 174
BLAST of jgi.p|Trimin1|82818 vs. uniprot
Match: A0A7S1NSJ9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NSJ9_9EUGL) HSP 1 Score: 163 bits (412), Expect = 9.280e-48 Identity = 82/150 (54.67%), Postives = 116/150 (77.33%), Query Frame = 3
Query: 66 RHELTEEQKQEVREAFELFDTEQTGTLSLYEAKVLLRALGFPVRKHDVLRAFHAVDPHADGAAVTLSHLYEMALPHYAGLDPQEEMLKAFRLFDADASGKISVADLRRVARELGEGLSEDDLQAMVDEFDRDQDGQISKDEFLAIMQNSN 515
R EL+EEQKQE+REAFELFDT++ GT+ +E KV +RALGF V+K +VLR VD G+ ++ H ++ A DP+EEM KAF+LFD D +G+I++ +LRRVARELGE +++++LQAM+DEFD+DQDG+I++DEF+AIM N++
Sbjct: 42 RLELSEEQKQEIREAFELFDTDKNGTIDAHEMKVAMRALGFDVKKEEVLRLMEDVDRDCTGS-ISFQHFSDIMSEKIADRDPREEMAKAFQLFDDDGTGRITLKNLRRVARELGETMNDEELQAMIDEFDKDQDGEINEDEFIAIMTNND 190
BLAST of jgi.p|Trimin1|82818 vs. uniprot
Match: G0QNX3_ICHMG (Uncharacterized protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QNX3_ICHMG) HSP 1 Score: 161 bits (408), Expect = 1.630e-47 Identity = 84/152 (55.26%), Postives = 114/152 (75.00%), Query Frame = 3
Query: 66 RHELTEEQKQEVREAFELFDTEQTGTLSLYEAKVLLRALGFPVRKHDVLRAFHAVDPHADGAAVTLSHLYEMALPHYAGLDPQEEMLKAFRLFDADASGKISVADLRRVARELGEGLSEDDLQAMVDEFDRDQDGQISKDEFLAIMQNSNAF 521
+ ELTEEQ+QE++EAF+LFDTE+TGT+ +E KV++RALGF VRK +VL+ + + E+ Y DP EE+LKAF+LFD D SGKIS+ +L+RVARELGE L++D+LQAM+DEFDRDQDGQIS++EFLAIM+ ++ +
Sbjct: 15 KQELTEEQRQEIKEAFDLFDTEKTGTVDYHELKVIMRALGFDVRKQEVLQIIKEXXX-XXXXXIQYADFVEIMTQRYNDRDPTEEILKAFKLFDEDNSGKISLRNLKRVARELGETLTDDELQAMIDEFDRDQDGQISQEEFLAIMKQTSIY 165
BLAST of jgi.p|Trimin1|82818 vs. uniprot
Match: A0A7S2V697_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V697_9STRA) HSP 1 Score: 161 bits (407), Expect = 1.860e-47 Identity = 82/154 (53.25%), Postives = 116/154 (75.32%), Query Frame = 3
Query: 42 LKRQPTRVRHELTEEQKQEVREAFELFDTEQTGTLSLYEAKVLLRALGFPVRKHDVLRAFHAVDPHADGAAVTLSHLYEMALPHYAGLDPQEEMLKAFRLFDADASGKISVADLRRVARELGEGLSEDDLQAMVDEFDRDQDGQISKDEFLAIM 503
L R+ + R ELT E++ E++EAF+LFD TG + L+E KVL+RALGFPV+K++V+R H VDP+ +G V + E+ YA DP+EE++KAF+LFD D + KIS+ ++RRVAREL E L+++++QAM+DEFDRDQDG+IS DEF+ IM
Sbjct: 6 LGRKKKKKRTELTAEERAELKEAFDLFDARHTGRIDLHELKVLIRALGFPVKKNEVVRLVHDVDPYNEGI-VDMDQYMEIMQEKYAARDPEEEIIKAFKLFDDDNTNKISMNNMRRVARELNENLNDEEMQAMIDEFDRDQDGEISLDEFIGIM 158
BLAST of jgi.p|Trimin1|82818 vs. uniprot
Match: A0A7S4D3C0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4D3C0_9EUGL) HSP 1 Score: 161 bits (408), Expect = 1.910e-47 Identity = 84/148 (56.76%), Postives = 113/148 (76.35%), Query Frame = 3
Query: 72 ELTEEQKQEVREAFELFDTEQTGTLSLYEAKVLLRALGFPVRKHDVLRAFHAVDPHADGAAVTLSHLYEMALPHYAGLDPQEEMLKAFRLFDADASGKISVADLRRVARELGEGLSEDDLQAMVDEFDRDQDGQISKDEFLAIMQNSN 515
ELTEEQKQE+REAFELFDT++ G + +E KV +RALGF VRK +VLR VD G + L ++ A DP++EM+KAF+LFD D SGKIS+ +LRRVARELGE +++++LQAM+DEFD+DQDG+I++DEF+AIM N++
Sbjct: 22 ELTEEQKQEIREAFELFDTDKNGQVDAHEMKVAMRALGFDVRKEEVLRLMEDVDREGTGH-IGLQDFTDIMSDKIADRDPRDEMIKAFQLFDDDNSGKISLKNLRRVARELGETMNDEELQAMIDEFDKDQDGEINEDEFIAIMTNND 168 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|82818 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10128 ID=mRNA_10128|Name=jgi.p|Trimin1|82818|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=555bp|location=Sequence derived from alignment at Contig_64:526542..528989+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCATAATGCTAGGACGTGCGGAAGGATTGGGCTTGACGCCCTTGAAGCGCback to top protein sequence of jgi.p|Trimin1|82818 >Trimin1|82818|CE82817_12 ID=Trimin1|82818|CE82817_12|Name=jgi.p|Trimin1|82818|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=173bp MLGRAEGLGLTPLKRQPTRVRHELTEEQKQEVREAFELFDTEQTGTLSLYback to top mRNA from alignment at Contig_64:526542..528989+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10128 ID=mRNA_10128|Name=jgi.p|Trimin1|82818|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2448bp|location=Sequence derived from alignment at Contig_64:526542..528989+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_64:526542..528989+ >mRNA_10128 ID=mRNA_10128|Name=jgi.p|Trimin1|82818|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=519bp|location=Sequence derived from alignment at Contig_64:526542..528989+ (Tribonema minus UTEX_B_3156 )back to top |