mRNA_10078 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150898
Unique NamemRNA_10078
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|150898 vs. uniprot
Match: A0A835YMI9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMI9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.140e-11
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 DMQLFAQFSQLLALDMSGCQHVTLLPDLAPMTALRR 108
            DMQLFAQFSQLLALDMSGCQHVTLLPDLAPMTALRR
Sbjct:    1 DMQLFAQFSQLLALDMSGCQHVTLLPDLAPMTALRR 36
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150898 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YMI9_9STRA2.140e-11100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_64contigContig_64:23990..24763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150898|gw1.64.100.1
Hectar predicted targeting categoryother localisation
TranscriptId151220
TrackFilteredModels1
ProteinId150898
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150898gene_10078Tribonema minus UTEX_B_3156 geneContig_64 23990..24763 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10078_1exon_10078_1Tribonema minus UTEX_B_3156 exonContig_64 23990..24763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10078CDS_10078Tribonema minus UTEX_B_3156 CDSContig_64 23990..24763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150898Trimin1|150898|gw1.64.100.1Tribonema minus UTEX_B_3156 polypeptideContig_64 23990..24763 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10078 ID=mRNA_10078|Name=jgi.p|Trimin1|150898|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=774bp|location=Sequence derived from alignment at Contig_64:23990..24763+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACATGCAATTGTTCGCACAGTTCTCGCAGCTGCTGGCACTCGACATGAG
CGGGTGCCAGCATGTGACACTGCTGCCCGATCTTGCGCCAATGACAGCAC
TGCGTCGCCTCAACCTGAGTGGCTGCTGGCGAGTTGCTTGCGTGCAGGGC
CTGGCCTCGTTGACAGAGTTGCAACACCTAAGCATGGTCAAATGCTGGCA
TATCACGGCTCTGCCTGGTCTCAGCGCGCTGGCGTGCCTGGAGTCATTGG
ACCTCACAAAGTGCTGGCACCTAATAGAGCTGCCAGAGCCTTTGACGCTG
CCAAAGCTGCAGCAGCTCCACCTGTGCGACTGCGAACAGCTCACTGCGCT
GCCCAAACTCGACTGCCTGCCCGAGCTAGAAATCCTAGACCTAGCTTGGT
GCACAGGACTAAAGCAGCTGCCAGCATTAGACGCACTGGAGTCCCTTCAG
CTGCTAGACTGCGGGTGGTGCACAGGTATGCTCACACCTCCCGCGCTAGG
CGCGCTTCCTGAGCTGCAGTACGCAGACTTCCATGCATGTAGGGGTCTCA
GCACACTGCCTGACATGTCTGGTCTGCTTGCGCTGGAGCTGCTGCGCGCC
AGCGAGTGCACACAGCTGCAACGCGTTCCGGGGCTAGAGAAGCTGCAAGC
CTTGCAGCATCTGGATCTCCGCAAGTGTGCGCAGCTGAGTAGCCTGGGCG
AGGCAGACTGCTGGCAAGCAATGCCTGAGCTCCGATACCTCAACCTGCGG
GGCTGCACTAGCCTTGCAGAGGTC
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protein sequence of jgi.p|Trimin1|150898

>Trimin1|150898|gw1.64.100.1 ID=Trimin1|150898|gw1.64.100.1|Name=jgi.p|Trimin1|150898|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=258bp
DMQLFAQFSQLLALDMSGCQHVTLLPDLAPMTALRRLNLSGCWRVACVQG
LASLTELQHLSMVKCWHITALPGLSALACLESLDLTKCWHLIELPEPLTL
PKLQQLHLCDCEQLTALPKLDCLPELEILDLAWCTGLKQLPALDALESLQ
LLDCGWCTGMLTPPALGALPELQYADFHACRGLSTLPDMSGLLALELLRA
SECTQLQRVPGLEKLQALQHLDLRKCAQLSSLGEADCWQAMPELRYLNLR
GCTSLAEV
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mRNA from alignment at Contig_64:23990..24763+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10078 ID=mRNA_10078|Name=jgi.p|Trimin1|150898|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=774bp|location=Sequence derived from alignment at Contig_64:23990..24763+ (Tribonema minus UTEX_B_3156 )
GACATGCAATTGTTCGCACAGTTCTCGCAGCTGCTGGCACTCGACATGAG
CGGGTGCCAGCATGTGACACTGCTGCCCGATCTTGCGCCAATGACAGCAC
TGCGTCGCCTCAACCTGAGTGGCTGCTGGCGAGTTGCTTGCGTGCAGGGC
CTGGCCTCGTTGACAGAGTTGCAACACCTAAGCATGGTCAAATGCTGGCA
TATCACGGCTCTGCCTGGTCTCAGCGCGCTGGCGTGCCTGGAGTCATTGG
ACCTCACAAAGTGCTGGCACCTAATAGAGCTGCCAGAGCCTTTGACGCTG
CCAAAGCTGCAGCAGCTCCACCTGTGCGACTGCGAACAGCTCACTGCGCT
GCCCAAACTCGACTGCCTGCCCGAGCTAGAAATCCTAGACCTAGCTTGGT
GCACAGGACTAAAGCAGCTGCCAGCATTAGACGCACTGGAGTCCCTTCAG
CTGCTAGACTGCGGGTGGTGCACAGGTATGCTCACACCTCCCGCGCTAGG
CGCGCTTCCTGAGCTGCAGTACGCAGACTTCCATGCATGTAGGGGTCTCA
GCACACTGCCTGACATGTCTGGTCTGCTTGCGCTGGAGCTGCTGCGCGCC
AGCGAGTGCACACAGCTGCAACGCGTTCCGGGGCTAGAGAAGCTGCAAGC
CTTGCAGCATCTGGATCTCCGCAAGTGTGCGCAGCTGAGTAGCCTGGGCG
AGGCAGACTGCTGGCAAGCAATGCCTGAGCTCCGATACCTCAACCTGCGG
GGCTGCACTAGCCTTGCAGAGGTC
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Coding sequence (CDS) from alignment at Contig_64:23990..24763+

>mRNA_10078 ID=mRNA_10078|Name=jgi.p|Trimin1|150898|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=774bp|location=Sequence derived from alignment at Contig_64:23990..24763+ (Tribonema minus UTEX_B_3156 )
GACATGCAATTGTTCGCACAGTTCTCGCAGCTGCTGGCACTCGACATGAG
CGGGTGCCAGCATGTGACACTGCTGCCCGATCTTGCGCCAATGACAGCAC
TGCGTCGCCTCAACCTGAGTGGCTGCTGGCGAGTTGCTTGCGTGCAGGGC
CTGGCCTCGTTGACAGAGTTGCAACACCTAAGCATGGTCAAATGCTGGCA
TATCACGGCTCTGCCTGGTCTCAGCGCGCTGGCGTGCCTGGAGTCATTGG
ACCTCACAAAGTGCTGGCACCTAATAGAGCTGCCAGAGCCTTTGACGCTG
CCAAAGCTGCAGCAGCTCCACCTGTGCGACTGCGAACAGCTCACTGCGCT
GCCCAAACTCGACTGCCTGCCCGAGCTAGAAATCCTAGACCTAGCTTGGT
GCACAGGACTAAAGCAGCTGCCAGCATTAGACGCACTGGAGTCCCTTCAG
CTGCTAGACTGCGGGTGGTGCACAGGTATGCTCACACCTCCCGCGCTAGG
CGCGCTTCCTGAGCTGCAGTACGCAGACTTCCATGCATGTAGGGGTCTCA
GCACACTGCCTGACATGTCTGGTCTGCTTGCGCTGGAGCTGCTGCGCGCC
AGCGAGTGCACACAGCTGCAACGCGTTCCGGGGCTAGAGAAGCTGCAAGC
CTTGCAGCATCTGGATCTCCGCAAGTGTGCGCAGCTGAGTAGCCTGGGCG
AGGCAGACTGCTGGCAAGCAATGCCTGAGCTCCGATACCTCAACCTGCGG
GGCTGCACTAGCCTTGCAGAGGTC
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