mRNA_10070 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351831
Unique NamemRNA_10070
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351831 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_100contigContig_100:516234..517588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351831|estExt_Genemark1.C_Ctg_1000075
Hectar predicted targeting categorysignal peptide
TranscriptId352153
TrackFilteredModels1
ProteinId351831
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351831gene_10070Tribonema minus UTEX_B_3156 geneContig_100 516234..517588 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10070_1exon_10070_1Tribonema minus UTEX_B_3156 exonContig_100 516234..516372 +
exon_10070_2exon_10070_2Tribonema minus UTEX_B_3156 exonContig_100 517414..517588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10070CDS_10070Tribonema minus UTEX_B_3156 CDSContig_100 516234..516372 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10070UTR3_10070Tribonema minus UTEX_B_3156 three_prime_UTRContig_100 517479..517588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351831Trimin1|351831|estExt_Genemark1.C_Ctg_1000075Tribonema minus UTEX_B_3156 polypeptideContig_100 516234..517478 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10070 ID=mRNA_10070|Name=jgi.p|Trimin1|351831|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=314bp|location=Sequence derived from alignment at Contig_100:516234..517588+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGGCGCACTGCTGGGGGCAGCGCTCGGCGCCGCAGTCACAGCCAG
ACGGCGTGCTGCCATCATCGGCATCATTGTGGGCGCCATGCTGGGGGCAG
TGCTGGGGGCAGTGCTCGGCGCAGCAGACTCCTGCGAATGCGCCATGCTA
GGAGCAACGCTGGGAGCGGAGGACGGGGCTGCAGAGGGCGCCATCGACTC
CTGATGCGACCAGAGTCATGGCAGCACAGAGGGCGAGCTAGAGGATTACA
CGGCGGCCTTCTACAAAACAGGAGATGATAGAATGGATGGGCCAGCCAGG
AGGTCCGAACCCGC
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protein sequence of jgi.p|Trimin1|351831

>Trimin1|351831|estExt_Genemark1.C_Ctg_1000075 ID=Trimin1|351831|estExt_Genemark1.C_Ctg_1000075|Name=jgi.p|Trimin1|351831|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=68bp
MLGALLGAALGAAVTARRRAAIIGIIVGAMLGAVLGAVLGAADSCECAML
GATLGAEDGAAEGAIDS*
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mRNA from alignment at Contig_100:516234..517588+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10070 ID=mRNA_10070|Name=jgi.p|Trimin1|351831|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1355bp|location=Sequence derived from alignment at Contig_100:516234..517588+ (Tribonema minus UTEX_B_3156 )
ATGCTCGGCGCACTGCTGGGGGCAGCGCTCGGCGCCGCAGTCACAGCCAG
ACGGCGTGCTGCCATCATCGGCATCATTGTGGGCGCCATGCTGGGGGCAG
TGCTGGGGGCAGTGCTCGGCGCAGCAGACTCCTGCGAATGTTGAATGGTG
GACGAATGCATGTTGAGTGGTGTGCGAGTCGGATATGAGATGAGGTATTC
GCCGCCGCTGCTGCTGCTGCTGCTTGGTGTGCAGGCTTCACGTGAAGAAC
GAGCACACGCCTCATAAGATCGGTAACATTGAGTGACCAGGTAAAGTAAT
GAAAAACGAATCAAAAAGATCGTTGTAATGTTGCGCATCGTACATGGGGC
GTGCCAGCATGAACATTGACATGACAAGCGGTTGGACTGTGAACTCCCCT
GCGCGCTGCGGCTATTACTGATCATGGAATGCCAGTAGAACTGAGGGGTG
TCCTTGTGCTGATCCAGGCAGCGCTAGTGCCAGCTGCAGTGTTGCCACTA
TGTGGGTCATGGTATTGATGACAGTTGACCACATCACTACAAGGATGAAA
ATTGTTGTTGAAAACTGTTTACAAAGCTCTGACTTGATGATGGGCAGCCG
AAATGCTGGTGTTCATCGTCACCTTCCAAAATCCGACTTTGATTGTTGTT
GGAAAGCGACGTCGAGTGAGTTCGAATTTAAGGCATCCCCCAATCTTTCA
AAACAGAAGCTGCACTGCTGCACGGCGTAGTCATTTCAATGAGTAAGTGA
TTCGCTATGACAGCACGCAAGCGCTGCGGACCTCGGAATCTTGACATCTC
CCGCATCACGCCCATTGCGTTGGAAGCGCCTTCATGAGCAACTTGCGTGA
ACACGCGGTTTGCGAATAGAGCATCGGAGTAGGCACGCACGCGTCTTGCA
AGCAATTATAACTGCGTCGCATCTGCAGCAGTGCACATCGCTCTGACCCG
ACCTCGACGCGCAGCCAAGAGCACCATTCGCCAGTGTTCCAGAGCTGCTT
GCCACAAGCACTCGGTTACCATCCTTCCATCATATTTCATTACTGCTGCC
ATCACACACACACTTACCGCCAGCCGCCGGCGCACAGCCACTGGAGCCAT
AGTTGGGGCAAAGGTGGGCGCAGTAGATGGCGCAGTAGAAGGAGCCACAG
ACTCTGCAAGCCTCCGGCGGGCCATTACAGGCGCCATGCTAGGAGCAACG
CTGGGAGCGGAGGACGGGGCTGCAGAGGGCGCCATCGACTCCTGATGCGA
CCAGAGTCATGGCAGCACAGAGGGCGAGCTAGAGGATTACACGGCGGCCT
TCTACAAAACAGGAGATGATAGAATGGATGGGCCAGCCAGGAGGTCCGAA
CCCGC
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Coding sequence (CDS) from alignment at Contig_100:516234..517588+

>mRNA_10070 ID=mRNA_10070|Name=jgi.p|Trimin1|351831|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=204bp|location=Sequence derived from alignment at Contig_100:516234..517588+ (Tribonema minus UTEX_B_3156 )
ATGCTCGGCGCACTGCTGGGGGCAGCGCTCGGCGCCGCAGTCACAGCCAG
ACGGCGTGCTGCCATCATCGGCATCATTGTGGGCGCCATGCTGGGGGCAG
TGCTGGGGGCAGTGCTCGGCGCAGCAGACTCCTGCGAATGCGCCATGCTA
GGAGCAACGCTGGGAGCGGAGGACGGGGCTGCAGAGGGCGCCATCGACTC
CTGA
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