mRNA_10056 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351822
Unique NamemRNA_10056
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|351822 vs. uniprot
Match: A0A835ZGJ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGJ6_9STRA)

HSP 1 Score: 662 bits (1708), Expect = 1.970e-239
Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 1 
Query:    1 MTAKEASAKLSARLRLPQSELRQYDLIVVHATPQGLRLRTLQDDDNVTDVRARAAAKLPPCDTCSGAAANLDVPLHQFSGFENMGRGIGQGTEAPGSWTPPFVNPFADETTAAEESAAAARDIEELLEIVLQGDQPPEDDGEGRGLSPNFLATLCALDDLPEPDEWLLPPAAEPVVGRRVVRFSEPERCADDAQAGAEAAMFGSVVPDMPPVQLSQPPYDQRYEEPATSFEFLIPTIDNVPVEVGDGSLEAKGVVVTTGGGDGGELKRATSESSDGASSQDNVDVTSRYRRKRQRRVDDSDRPAVCVKRTELANRRPRVNGRFISQPSNFKPVTEM 1008
            MTAKEASAKLSARLRLPQSELRQYDLIVVHATPQGLRLRTLQDDDNVTDVRARAAAKLPPCDTCSGAAANLDVPLHQFSGFENMGRGIGQGTEAPGSWTPPFVNPFADETTAAEESAAAARDIEELLEIVLQGDQPPEDDGEGRGLSPNFLATLCALDDLPEPDEWLLPPAAEPVVGRRVVRFSEPERCADDAQAGAEAAMFGSVVPDMPPVQLSQPPYDQRYEEPATSFEFLIPTIDNVPVEVGDGSLEAKGVVVTTGGGDGGELKRATSESSDGASSQDNVDVTSRYRRKRQRRVDDSDRPAVCVKRTELANRRPRVNGRFISQPSNFKPVTEM
Sbjct:    1 MTAKEASAKLSARLRLPQSELRQYDLIVVHATPQGLRLRTLQDDDNVTDVRARAAAKLPPCDTCSGAAANLDVPLHQFSGFENMGRGIGQGTEAPGSWTPPFVNPFADETTAAEESAAAARDIEELLEIVLQGDQPPEDDGEGRGLSPNFLATLCALDDLPEPDEWLLPPAAEPVVGRRVVRFSEPERCADDAQAGAEAAMFGSVVPDMPPVQLSQPPYDQRYEEPATSFEFLIPTIDNVPVEVGDGSLEAKGVVVTTGGGDGGELKRATSESSDGASSQDNVDVTSRYRRKRQRRVDDSDRPAVCVKRTELANRRPRVNGRFISQPSNFKPVTEM 336
[Close]
BLAST of jgi.p|Trimin1|351822 vs. uniprot
Match: A0A836CN83_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN83_9STRA)

HSP 1 Score: 499 bits (1286), Expect = 2.790e-176
Identity = 255/261 (97.70%), Postives = 257/261 (98.47%), Query Frame = 1 
Query:  229 QFSGFENMGRGIGQGTEAPGSWTPPFVNPFADETTAAEESAAAARDIEELLEIVLQGDQPPEDDGEGR-GLSPNFLATLCALDDLPEPDEWLLPPAAEPVVGRRVVRFSEPERCADDAQAGAEAAMFGSVVPDMPPVQLSQPPYDQRYEEPATSFEFLIPTIDNVPVEVGDGSLEAKGVVVTTGGGDGGELKRATSESSDGASSQDNVDVTSRYRRKRQRRVDDSDRPAVCVKRTELANRRPRVNGRFISQPSNFKPVTEM 1008
            +FSGFENMGRGIGQG EAPGSWTPPFVNPFADETTAAEESAAAARDIEELLEIVLQGDQPPEDDGEGR GLSPNFLATLCALDDLPEPDEWLLPPAAEPVVGRRVVRFSEPERCADDAQAGAEAAMFGSVVP+MPPVQLSQPPYDQRYEEPATSFEFLIPTIDNVPVE GDGS EAKGVVVTTGGGDGGELKRATSESSDGASSQDNVDVTSRYRRKRQRRVDDSDRPAVCVKRTELANRRPRVNGRFISQPSNFKPVTEM
Sbjct:    6 EFSGFENMGRGIGQGLEAPGSWTPPFVNPFADETTAAEESAAAARDIEELLEIVLQGDQPPEDDGEGRRGLSPNFLATLCALDDLPEPDEWLLPPAAEPVVGRRVVRFSEPERCADDAQAGAEAAMFGSVVPEMPPVQLSQPPYDQRYEEPATSFEFLIPTIDNVPVEGGDGSPEAKGVVVTTGGGDGGELKRATSESSDGASSQDNVDVTSRYRRKRQRRVDDSDRPAVCVKRTELANRRPRVNGRFISQPSNFKPVTEM 266
[Close]
BLAST of jgi.p|Trimin1|351822 vs. uniprot
Match: A0A835ZFB7_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFB7_9STRA)

HSP 1 Score: 144 bits (362), Expect = 6.860e-36
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:    1 MTAKEASAKLSARLRLPQSELRQYDLIVVHATPQGLRLRTLQDDDNVTDVRARAAAKLPPCDTCSGAAANLDVPLHQ 231
            MTAKEASAKLSARLRLPQSELRQYDLIVVHATPQGLRLRTL+D DNVT+VRARAAAKLPPCDTCSGAAANLDVPL Q
Sbjct:   47 MTAKEASAKLSARLRLPQSELRQYDLIVVHATPQGLRLRTLRDGDNVTEVRARAAAKLPPCDTCSGAAANLDVPLLQ 123
[Close]
BLAST of jgi.p|Trimin1|351822 vs. uniprot
Match: A0A835ZB73_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB73_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 6.480e-20
Identity = 87/253 (34.39%), Postives = 120/253 (47.43%), Query Frame = 1 
Query:  334 AAEESAAAARDIEELLEIVLQGD--QPPEDDGEGRGLSPNFLATLCALDDLPEPDEWLLPPAAEPVVG------RRVVRFSEPERCADDAQAGAEAAMFGSVVPDMPPVQLSQP--PYD----------QRYEEPATSFEFL--IPTIDNVPVEVGDGSLEAKGVVVTTGGGDGGELKRATSESSD------GASSQDNVDVTSRYRRKRQRRVDDSDRPAVCVKRTELANRRPRVNGRFISQPSNFKPVTEM 1008
            AA E AAA   I++LL+++L  D  +P          SP+F +     D LP  ++WLLPP A P         R V+    PE+     Q     + + + V   P  Q  QP  P+           +    P TSF FL  IP + ++P+E GDG        +T         +  T+ + D       A+ ++      RY +KRQRR+  + RPAV V+RTELAN RPRV GRFISQPS F PVT +
Sbjct:   15 AATEQAAA---IDDLLDLILLSDGVRPEGAPTSSPHFSPSFWSIFSDPDALPAAEDWLLPPPAAPAAPLVAPEPRHVIVVRSPEQ----QQQHLNKSRYLTEVNSAPLSQRQQPQRPFSAVGGASSAPFKPQPAPTTSFAFLDLIPKVASIPIE-GDGPAAHAPTTITPVHHGWAAKRTVTAAAIDLGAGAVKAAPREKRAKVERYLQKRQRRMQQASRPAVYVRRTELANARPRVAGRFISQPSGFVPVTRL 259
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351822 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZGJ6_9STRA1.970e-239100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CN83_9STRA2.790e-17697.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZFB7_9STRA6.860e-3694.81PH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A835ZB73_9STRA6.480e-2034.39CCT domain-containing protein n=1 Tax=Tribonema mi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_100contigContig_100:417345..419384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351822|estExt_Genemark1.C_Ctg_1000062
Hectar predicted targeting categoryother localisation
TranscriptId352144
TrackFilteredModels1
ProteinId351822
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351822gene_10056Tribonema minus UTEX_B_3156 geneContig_100 417345..419384 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10056_1exon_10056_1Tribonema minus UTEX_B_3156 exonContig_100 417345..417575 +
exon_10056_2exon_10056_2Tribonema minus UTEX_B_3156 exonContig_100 418474..419384 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10056CDS_10056Tribonema minus UTEX_B_3156 CDSContig_100 417345..417575 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10056UTR3_10056Tribonema minus UTEX_B_3156 three_prime_UTRContig_100 419254..419384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351822Trimin1|351822|estExt_Genemark1.C_Ctg_1000062Tribonema minus UTEX_B_3156 polypeptideContig_100 417345..419253 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10056 ID=mRNA_10056|Name=jgi.p|Trimin1|351822|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1142bp|location=Sequence derived from alignment at Contig_100:417345..419384+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCAAAGAGGCATCCGCCAAACTCAGCGCAAGATTAAGGCTGCC
TCAGTCGGAGCTTCGCCAGTACGACCTCATCGTGGTACATGCAACACCCC
AGGGACTGAGGCTCAGGACACTGCAAGACGACGACAATGTTACAGACGTC
AGGGCCCGGGCAGCCGCCAAGCTGCCGCCGTGCGACACCTGCAGCGGCGC
TGCCGCGAACCTCGATGTGCCTCTGCACCAGTTTAGCGGGTTCGAAAACA
TGGGGCGGGGCATAGGGCAGGGCACGGAGGCGCCGGGCAGCTGGACGCCG
CCGTTCGTCAACCCATTTGCGGATGAGACGACGGCGGCGGAGGAGAGCGC
CGCCGCGGCGCGAGACATCGAGGAGCTGCTGGAGATTGTGCTCCAGGGTG
ATCAGCCTCCCGAGGACGATGGAGAGGGCCGGGGGCTGTCTCCAAACTTT
CTGGCGACGCTCTGCGCGCTGGACGATCTGCCGGAGCCGGACGAGTGGCT
GCTGCCGCCGGCGGCGGAGCCTGTCGTCGGGCGCCGCGTTGTGCGCTTCA
GCGAGCCGGAGCGTTGCGCCGACGACGCTCAGGCTGGCGCCGAGGCAGCG
ATGTTTGGCAGCGTCGTCCCCGACATGCCTCCCGTGCAGCTGTCTCAGCC
GCCCTACGATCAGCGCTACGAGGAGCCAGCAACATCCTTCGAGTTTCTCA
TCCCCACCATCGACAACGTGCCGGTGGAGGTGGGTGACGGGAGCCTGGAG
GCGAAGGGGGTGGTGGTGACCACCGGCGGGGGGGACGGGGGCGAATTAAA
GCGGGCGACGAGCGAGAGTAGCGATGGCGCCAGCTCACAGGACAATGTAG
ACGTAACCAGTAGGTATCGAAGGAAGCGGCAGCGCAGAGTTGACGACAGT
GACCGCCCTGCCGTATGTGTCAAGCGGACGGAGCTGGCAAACCGCCGCCC
CCGCGTCAACGGGCGCTTCATCTCTCAGCCCAGTAACTTTAAGCCCGTCA
CTGAGATGTAAGCAGTGGGGGCCACCGATTCATCCTCGATCCCAGTACTG
ATTGGGTCCAGCCACCTCGAGGGTACTTGTGCATTGCACATTCATCATTT
TACTCGCCGAATGAATGTGCATTCATAATACGACTGCGTGGT
back to top

protein sequence of jgi.p|Trimin1|351822

>Trimin1|351822|estExt_Genemark1.C_Ctg_1000062 ID=Trimin1|351822|estExt_Genemark1.C_Ctg_1000062|Name=jgi.p|Trimin1|351822|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=337bp
MTAKEASAKLSARLRLPQSELRQYDLIVVHATPQGLRLRTLQDDDNVTDV
RARAAAKLPPCDTCSGAAANLDVPLHQFSGFENMGRGIGQGTEAPGSWTP
PFVNPFADETTAAEESAAAARDIEELLEIVLQGDQPPEDDGEGRGLSPNF
LATLCALDDLPEPDEWLLPPAAEPVVGRRVVRFSEPERCADDAQAGAEAA
MFGSVVPDMPPVQLSQPPYDQRYEEPATSFEFLIPTIDNVPVEVGDGSLE
AKGVVVTTGGGDGGELKRATSESSDGASSQDNVDVTSRYRRKRQRRVDDS
DRPAVCVKRTELANRRPRVNGRFISQPSNFKPVTEM*
back to top

mRNA from alignment at Contig_100:417345..419384+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10056 ID=mRNA_10056|Name=jgi.p|Trimin1|351822|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2040bp|location=Sequence derived from alignment at Contig_100:417345..419384+ (Tribonema minus UTEX_B_3156 )
ATGACCGCCAAAGAGGCATCCGCCAAACTCAGCGCAAGATTAAGGCTGCC
TCAGTCGGAGCTTCGCCAGTACGACCTCATCGTGGTACATGCAACACCCC
AGGGACTGAGGCTCAGGACACTGCAAGACGACGACAATGTTACAGACGTC
AGGGCCCGGGCAGCCGCCAAGCTGCCGCCGTGCGACACCTGCAGCGGCGC
TGCCGCGAACCTCGATGTGCCTCTGCACCAGGTACAGCTGCAGCTACTGC
AGTGCGCGCATCCGCTGGTTCTTCAAAGACAGCAGGACGGCTCCACTGGA
CTTTGAGGAGGGCCCCTCCGGATCGGAGGCCAGCGATGGCGGAGGGGAGG
ACTGCTGCACTTGGAATGCTCTGGCTTACGTTGGACAGGGGAACCTGAGT
GATTACCTGTACAGGCAGAGCCAGCGAGATGGGAAATTATGGCGGCGGCG
TTGGTGTACGCTCACGGTGAGGAAGCGCTGAGTCTGTGCAGTGGAAGGCA
TCGCTCATGCGGCAGAGCGCTTCACACCTTGGACTGCAGCAGTTGCACAT
GCTGGTTCTTGCTCTGTGGCTTGCTTTGGGATGACACAACACAAGGCATC
AGGCTGTGGGGAGAAGGCTTCTGGTGCTGCTTGCGGGGCTTGGTGCCTCT
CCTCCGCTGTGTATCTAGCTGTGTATGCATCTGTGATGACATGACAAAGC
ATGTCGGTGATGACACTCACGACTACGTCCGAAAGGCTCAAGCTGGAACA
GCGCGTGTGGGAGGGTGTTGCAAAAATTTAGGCGATTCCCACTCCACCAT
CTGGACCCTCACTCCGCACTCAGACCGTGTGGGCAGTCAGTACCGTATCT
GTTTAACAGCTTATCCTCCGCTGAAGACGCCGCTGAGAGCCTATTCCGAG
GCCCCCTCTGTGCGGCAGCAGCAGCAGCCTAGGTGAGGCTGCTGCGCTCG
ACGCGACCCGTCACCTCTCACCCAGCCTGGCACTCCGCAACACATACACA
CAAGAGCCGGAAATGGCGTTCCAAACTGCAGCAGCGCGCAATGCGCAATG
GCTTCCGCTCGCTCAGCCTCCTTGTGGCCCACCGGTCGCCTGAAGCGCAC
GAGCTATAGCTATGAACCTGGCCGACGAGTTTAGCGGGTTCGAAAACATG
GGGCGGGGCATAGGGCAGGGCACGGAGGCGCCGGGCAGCTGGACGCCGCC
GTTCGTCAACCCATTTGCGGATGAGACGACGGCGGCGGAGGAGAGCGCCG
CCGCGGCGCGAGACATCGAGGAGCTGCTGGAGATTGTGCTCCAGGGTGAT
CAGCCTCCCGAGGACGATGGAGAGGGCCGGGGGCTGTCTCCAAACTTTCT
GGCGACGCTCTGCGCGCTGGACGATCTGCCGGAGCCGGACGAGTGGCTGC
TGCCGCCGGCGGCGGAGCCTGTCGTCGGGCGCCGCGTTGTGCGCTTCAGC
GAGCCGGAGCGTTGCGCCGACGACGCTCAGGCTGGCGCCGAGGCAGCGAT
GTTTGGCAGCGTCGTCCCCGACATGCCTCCCGTGCAGCTGTCTCAGCCGC
CCTACGATCAGCGCTACGAGGAGCCAGCAACATCCTTCGAGTTTCTCATC
CCCACCATCGACAACGTGCCGGTGGAGGTGGGTGACGGGAGCCTGGAGGC
GAAGGGGGTGGTGGTGACCACCGGCGGGGGGGACGGGGGCGAATTAAAGC
GGGCGACGAGCGAGAGTAGCGATGGCGCCAGCTCACAGGACAATGTAGAC
GTAACCAGTAGGTATCGAAGGAAGCGGCAGCGCAGAGTTGACGACAGTGA
CCGCCCTGCCGTATGTGTCAAGCGGACGGAGCTGGCAAACCGCCGCCCCC
GCGTCAACGGGCGCTTCATCTCTCAGCCCAGTAACTTTAAGCCCGTCACT
GAGATGTAAGCAGTGGGGGCCACCGATTCATCCTCGATCCCAGTACTGAT
TGGGTCCAGCCACCTCGAGGGTACTTGTGCATTGCACATTCATCATTTTA
CTCGCCGAATGAATGTGCATTCATAATACGACTGCGTGGT
back to top

Coding sequence (CDS) from alignment at Contig_100:417345..419384+

>mRNA_10056 ID=mRNA_10056|Name=jgi.p|Trimin1|351822|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1011bp|location=Sequence derived from alignment at Contig_100:417345..419384+ (Tribonema minus UTEX_B_3156 )
ATGACCGCCAAAGAGGCATCCGCCAAACTCAGCGCAAGATTAAGGCTGCC
TCAGTCGGAGCTTCGCCAGTACGACCTCATCGTGGTACATGCAACACCCC
AGGGACTGAGGCTCAGGACACTGCAAGACGACGACAATGTTACAGACGTC
AGGGCCCGGGCAGCCGCCAAGCTGCCGCCGTGCGACACCTGCAGCGGCGC
TGCCGCGAACCTCGATGTGCCTCTGCACCAGTTTAGCGGGTTCGAAAACA
TGGGGCGGGGCATAGGGCAGGGCACGGAGGCGCCGGGCAGCTGGACGCCG
CCGTTCGTCAACCCATTTGCGGATGAGACGACGGCGGCGGAGGAGAGCGC
CGCCGCGGCGCGAGACATCGAGGAGCTGCTGGAGATTGTGCTCCAGGGTG
ATCAGCCTCCCGAGGACGATGGAGAGGGCCGGGGGCTGTCTCCAAACTTT
CTGGCGACGCTCTGCGCGCTGGACGATCTGCCGGAGCCGGACGAGTGGCT
GCTGCCGCCGGCGGCGGAGCCTGTCGTCGGGCGCCGCGTTGTGCGCTTCA
GCGAGCCGGAGCGTTGCGCCGACGACGCTCAGGCTGGCGCCGAGGCAGCG
ATGTTTGGCAGCGTCGTCCCCGACATGCCTCCCGTGCAGCTGTCTCAGCC
GCCCTACGATCAGCGCTACGAGGAGCCAGCAACATCCTTCGAGTTTCTCA
TCCCCACCATCGACAACGTGCCGGTGGAGGTGGGTGACGGGAGCCTGGAG
GCGAAGGGGGTGGTGGTGACCACCGGCGGGGGGGACGGGGGCGAATTAAA
GCGGGCGACGAGCGAGAGTAGCGATGGCGCCAGCTCACAGGACAATGTAG
ACGTAACCAGTAGGTATCGAAGGAAGCGGCAGCGCAGAGTTGACGACAGT
GACCGCCCTGCCGTATGTGTCAAGCGGACGGAGCTGGCAAACCGCCGCCC
CCGCGTCAACGGGCGCTTCATCTCTCAGCCCAGTAACTTTAAGCCCGTCA
CTGAGATGTAA
back to top