mRNA_10038 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|149136 vs. uniprot
Match: A0A836CN44_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN44_9STRA) HSP 1 Score: 333 bits (855), Expect = 6.610e-116 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1
Query: 1 LDEAGLTDDTGFAKFAEACEQKGFFVGCDEDDGGLMWMQRFRKMVGVYQRSPDDRKAEHLKSRASHFVRVGDIPRAIACYNEAIQLVPEGEQTHVILTSRAALLCREGDVNGALSDCKRAAALRPTYAKAYSRMGFVYACMERTEDAVAAYERAVALDPTDPSN 492
LDEAGLTDDTGFAKFAEACEQKGFFVGCDEDDGGLMWMQRFRKMVGVYQRSPDDRKAEHLKSRASHFVRVGDIPRAIACYNEAIQLVPEGEQTHVILTSRAALLCREGDVNGALSDCKRAAALRPTYAKAYSRMGFVYACMERTEDAVAAYERAVALDPTDPSN
Sbjct: 1 LDEAGLTDDTGFAKFAEACEQKGFFVGCDEDDGGLMWMQRFRKMVGVYQRSPDDRKAEHLKSRASHFVRVGDIPRAIACYNEAIQLVPEGEQTHVILTSRAALLCREGDVNGALSDCKRAAALRPTYAKAYSRMGFVYACMERTEDAVAAYERAVALDPTDPSN 164
BLAST of jgi.p|Trimin1|149136 vs. uniprot
Match: A0A6H5J668_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J668_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 4.560e-17 Identity = 45/115 (39.13%), Postives = 72/115 (62.61%), Query Frame = 1
Query: 148 RSPDDRKAEHLKSRASHFVRVGDIPRAIACYNEAIQLVPEGEQTHVILTSRAALLCREGDVNGALSDCKRAAALRPTYAKAYSRMGFVYACMERTEDAVAAYERAVALDPTDPSN 492
++ D++KAE +K + + D A A Y EA++L P G +HV L +RAA LC G + A+ DC+ A L P+YAKAY+R+G+ Y +E E AV AY++++ ++P + +N
Sbjct: 168 KAADEKKAEEVKGEGNKLLLAKDYEGAEAKYTEALELSPSGPNSHVYLCNRAAALCYLGRNDDAVVDCQEAIDLNPSYAKAYTRLGYAYFQLEDYEAAVKAYKKSLEIEPGNAAN 282
BLAST of jgi.p|Trimin1|149136 vs. uniprot
Match: A0A2D4BIE8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BIE8_PYTIN) HSP 1 Score: 75.9 bits (185), Expect = 4.500e-13 Identity = 45/154 (29.22%), Postives = 79/154 (51.30%), Query Frame = 1
Query: 40 KFAEACEQKGFFVGCDEDDGGLMWMQRFRKMVGVYQ--------------RSPDDRKAEHLKSRASHFVRVGDIPRAIACYNEAIQLVPEGEQTHVILTSRAALLCREGDVNGALSDCKRAAALRPTYAKAYSRMGFVYACMERTEDAVAAYER 459
K+ E KGFF G D G + + R +K + Y+ ++ + KAE +K++ + + GD +A Y+EA+QL +G +H+ + AA L G + + +C++A AL+P+Y KAYSRMG ++ + A+ ++ R
Sbjct: 99 KWVAKLEDKGFFNGADV--GSVEYQTRIKKALAKYKEKFGDVKPAAPSMTKAEKEAKAEEIKAKGNSALNGGDYEQAAKLYSEALQLSSDGPNSHIYYANYAAALMYLGRYSEVIDNCEKAIALKPSYVKAYSRMGNAQIHLKDFDGAIESFRR 250
BLAST of jgi.p|Trimin1|149136 vs. uniprot
Match: UPI001183F5E7 (Uncharacterized protein n=2 Tax=Manduca sexta TaxID=7130 RepID=UPI001183F5E7) HSP 1 Score: 75.1 bits (183), Expect = 9.640e-13 Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 1
Query: 166 KAEHLKSRASHFVRVGDIPRAIACYNEAIQLVPEGEQTHVILTSRAALLCREGDVNGALSDCKRAAALRPTYAKAYSRMGFVYACMERTEDAVAAYERAVALDPT 480
+ LK + + + G+ AI CY AI L P HV+ ++R+A + G+ AL D ++ A+ PT++K YSRMG A + R E+A+AAYE+ + L+P+
Sbjct: 3 QVNQLKEKGNAALASGNYDEAIQCYTTAINLDPNN---HVLFSNRSAAYAKSGNYTAALKDAEQTVAINPTWSKGYSRMGSALAFLGRREEAIAAYEKGLELEPS 104
BLAST of jgi.p|Trimin1|149136 vs. uniprot
Match: A0A1X7UMI6_AMPQE (SGTA_dimer domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UMI6_AMPQE) HSP 1 Score: 72.0 bits (175), Expect = 8.630e-12 Identity = 49/161 (30.43%), Postives = 80/161 (49.69%), Query Frame = 1
Query: 4 DEAGLTDDTGFAKFAEACEQKGFFVGCDEDDGGLMWMQRFRKMVGVYQRSPDDRK---AEHLKSRASHFVRVGDIPRAIACYNEAIQLVPEGEQTHVILTSRAALLCREGDVNGALSDCKRAAALRPTYAKAYSRMGFVYACMERTEDAVAAYERAVALDP 477
D++ D + A C Q F + DE + + + + DD K AE LK+ + ++ AI+ Y AI L P + +RAA + +++ AL DC+ A L+P YA+A+ RMGF+Y+ + RT++A A+Y++AV DP
Sbjct: 32 DDSTSDDSKESLEVAMECLQAVFGMNLDEAENNDTYKKLPSLQSLIENGLSDDEKHVEAERLKNEGNTKLKNEQYNEAISLYTRAITLSPSNPPYYA---NRAAAYIKIEELHKALDDCQTAVGLKPDYARAHGRMGFIYSKLSRTQEARASYQKAVECDP 189
BLAST of jgi.p|Trimin1|149136 vs. uniprot
Match: H0X3F8_OTOGA (SGTA_dimer domain-containing protein n=6 Tax=Boreoeutheria TaxID=1437010 RepID=H0X3F8_OTOGA) HSP 1 Score: 70.5 bits (171), Expect = 2.190e-11 Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1
Query: 166 KAEHLKSRASHFVRVGDIPRAIACYNEAIQLVPEGEQTHVILTSRAALLCREGDVNGALSDCKRAAALRPTYAKAYSRMGFVYACMERTEDAVAAYERAVALDPTDPS 489
KA+ LK ++ ++ + A+ CY +AI+L P V +RAA + G A+ DC++A A+ Y+KAY RMG M + E+AV +Y++A+ LDP + S
Sbjct: 84 KADQLKDEGNNHMKEENYGAAVDCYTQAIELDPNNA---VYFCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDS 188
BLAST of jgi.p|Trimin1|149136 vs. uniprot
Match: A0A7S1BHR6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BHR6_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 5.850e-11 Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = 1
Query: 163 RKAEHLKSRASHFVRVGDIPRAIACYNEAIQLVPEGEQTHVILTSRAALLCREGDVNGALSDCKRAAALRPTYAKAYSRMGFVYACMERTEDAVAAYERAVALDP 477
++AE +K + + + RA Y+ AI+L P G +HV +RAA L A SD + A LRP+Y KA++R+G ++ E+AVAAY+ AVA DP
Sbjct: 53 KEAERMKGLGNRHMAAQEYTRAYNVYSAAIELSPYGPTSHVYYANRAAALLSLKRYAAAESDARAAIELRPSYGKAHARLGQALYFLKDYENAVAAYQEAVAHDP 157
BLAST of jgi.p|Trimin1|149136 vs. uniprot
Match: W8C7E7_CERCA (Small glutamine-rich tetratricopeptide repeat-containing protein beta n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8C7E7_CERCA) HSP 1 Score: 67.8 bits (164), Expect = 2.190e-10 Identity = 39/112 (34.82%), Postives = 61/112 (54.46%), Query Frame = 1
Query: 145 QRSPD-DRKAEHLKSRASHFVRVGDIPRAIACYNEAIQLVPEGEQTHVILTSRAALLCREGDVNGALSDCKRAAALRPTYAKAYSRMGFVYACMERTEDAVAAYERAVALDP 477
+RSP+ R AE K+ + ++ G A+ YN AI P+ + +RAA R A++DCK A +PTY+KAY R+G Y+ + + +A AYE+A+ L+P
Sbjct: 82 ERSPEVSRLAESFKNEGNRLMKDGKYNEALLQYNRAISFDPKNP---IYYCNRAAAHIRLNHNENAITDCKTALLYKPTYSKAYGRLGIAYSNLNKFSEAQQAYEKAIELEP 190
BLAST of jgi.p|Trimin1|149136 vs. uniprot
Match: A0A0P1AE70_PLAHL (TPR repeat-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AE70_PLAHL) HSP 1 Score: 67.8 bits (164), Expect = 3.090e-10 Identity = 45/158 (28.48%), Postives = 74/158 (46.84%), Query Frame = 1
Query: 40 KFAEACEQKGFFVGCDEDDGGLMWMQRFRKMVGVYQRSPDD-----------RKAEHLKSRASHFVRVGDIPRAIACYNEAIQLVPEGEQTHVILTSRAALLCREGDVNGALSDCKRAAALRPTYAKAYSRMGFVYACMERTEDAVAAYERAVALDPT 480
K+ + KGFF D G ++ R K + ++ D KAE K++ + + D A Y EA+QL P G +H+ ++ AA L G + + C+++ AL+P+Y KAYSR+G + + A+ AY R + +D T
Sbjct: 105 KWVAKLDSKGFFK--DATPGSTDYVMRLNKALLKFKEKFGDVKPVLTIEEKELKAEEAKTQGNAALSRQDYEGAAKLYREALQLSPHGPSSHIYHSNLAAALMYMGKYSEVIDHCEQSIALKPSYVKAYSRLGSAQVQLRDYDGAIDAYRRGLEVDST 260
BLAST of jgi.p|Trimin1|149136 vs. uniprot
Match: A0A8J5ZZE1_GALPY (Small glutamine-rich tetratricopeptide repeat-containing protein beta n=1 Tax=Galemys pyrenaicus TaxID=202257 RepID=A0A8J5ZZE1_GALPY) HSP 1 Score: 65.5 bits (158), Expect = 5.510e-10 Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 1
Query: 166 KAEHLKSRASHFVRVGDIPRAIACYNEAIQLVPEGEQTHVILTSRAALLCREGDVNGALSDCKRAAALRPTYAKAYSRMGFVYACMERTEDAVAAYERAVALDPTDPS 489
KA+ LK ++ ++ + A+ CY +AI+L P V +RAA + A+ DC++A A+ Y+KAY RM M + E+AV +Y++A+ LDP + S
Sbjct: 84 KADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNA---VYYCNRAAAQSKLSHYTDAIKDCEKATAIDSKYSKAYGRMRLALTAMNKFEEAVTSYQKALDLDPENDS 188 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149136 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10038 ID=mRNA_10038|Name=jgi.p|Trimin1|149136|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=492bp|location=Sequence derived from alignment at Contig_100:286333..286824- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTGGACGAGGCTGGGCTCACCGATGACACAGGCTTTGCCAAGTTTGCAGAback to top protein sequence of jgi.p|Trimin1|149136 >Trimin1|149136|gw1.100.78.1 ID=Trimin1|149136|gw1.100.78.1|Name=jgi.p|Trimin1|149136|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=164bp LDEAGLTDDTGFAKFAEACEQKGFFVGCDEDDGGLMWMQRFRKMVGVYQRback to top mRNA from alignment at Contig_100:286333..286824- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10038 ID=mRNA_10038|Name=jgi.p|Trimin1|149136|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=492bp|location=Sequence derived from alignment at Contig_100:286333..286824- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_100:286333..286824- >mRNA_10038 ID=mRNA_10038|Name=jgi.p|Trimin1|149136|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=492bp|location=Sequence derived from alignment at Contig_100:286333..286824- (Tribonema minus UTEX_B_3156 )back to top |