mRNA_10034 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|351803 vs. uniprot
Match: A0A835ZF53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF53_9STRA) HSP 1 Score: 219 bits (558), Expect = 2.810e-72 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1
Query: 1 MASKSDERRERHNDVETSIDAALAALDGLTDAVVKLDADSMKAKITPEFMLEVKGLEHKFNSTVERELFFCVHHAVHHMAMIALILKNIGGYDDEIAQLGRAPSTQYEDRRS 336
MASKSDERRERHNDVETSIDAALAALDGLTDAVVKLDADSMKAKITPEFMLEVKGLEHKFNSTVERELFFCVHHAVHHMAMIALILKNIGGYDDEIAQLGRAPSTQYEDRRS
Sbjct: 1 MASKSDERRERHNDVETSIDAALAALDGLTDAVVKLDADSMKAKITPEFMLEVKGLEHKFNSTVERELFFCVHHAVHHMAMIALILKNIGGYDDEIAQLGRAPSTQYEDRRS 112
BLAST of jgi.p|Trimin1|351803 vs. uniprot
Match: A0A7S1U1W9_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U1W9_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.150e-15 Identity = 46/100 (46.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query: 19 ERRERHNDVETSIDAALAALDGLTDAVVKLDADSMKAKITPEFMLEVKGLEHKFNSTVERELFFCVHHAVHHMAMIALILKNIGGYDDEIAQLGRAPSTQ 318
++RER N +ET ++ A A + L + + D + ++ FML GLEH F ST+ERELFF VHH+VHH A I ILK G E GRAPSTQ
Sbjct: 164 DKRERGNAIETDLEEARATIRDLEATIGGIPEDGLGERVRVRFMLNGDGLEHDFESTLERELFFVVHHSVHHDATIGTILKEQGLPPPET--FGRAPSTQ 261
BLAST of jgi.p|Trimin1|351803 vs. uniprot
Match: A0A6G0XI04_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI04_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 5.880e-9 Identity = 41/98 (41.84%), Postives = 55/98 (56.12%), Query Frame = 1
Query: 25 RERHNDVETSIDAALAALDGL-TDAVVKLDADSMKAKITPEFMLEVKGLEHKFNSTVERELFFCVHHAVHHMAMIALILKNIGGYDDEIAQLGRAPST 315
RER+ +VE + A+ A+D L T A ++D + + FML G E K STVERE+ F VHHA+HH A+I +IL + Q G APST
Sbjct: 92 RERNTNVEVNRLDAIDAMDKLGTLATTQVDEAHLHKPVDAMFMLSGDGNEVKLQSTVEREMAFAVHHAIHHNALIKVILTTHFPHVPLPPQFGVAPST 189
BLAST of jgi.p|Trimin1|351803 vs. uniprot
Match: A0A3R6ZNZ1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6ZNZ1_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 4.680e-8 Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query: 25 RERHNDVETSIDAALAALDGL-TDAVVKLDADSMKAKITPEFMLEVKGLEHKFNSTVERELFFCVHHAVHHMAMIALILKNIGGYDDEIAQLGRAPSTQY 321
R+R +ET+ +AAL +D + T A D S+ ++ F L +G E ST+ERE+ F VHHA+HH A+I +I+ + + G APST +
Sbjct: 97 RDRLTQIETNREAALVEMDAIQTFASRVADTTSLSKEVQAAFRLSAEGDEVALRSTIEREMAFAVHHAIHHHALIKVIMTSHFPHVPLPPAFGVAPSTVH 196
BLAST of jgi.p|Trimin1|351803 vs. uniprot
Match: A0A485LUE6_9STRA (Aste57867_25553 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LUE6_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 2.990e-7 Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 1
Query: 25 RERHNDVETSIDAALAALDGLTDAVV--KLDADSMKAKITPEFMLEVKGLEHKFNSTVERELFFCVHHAVHHMAMIALILKNIGGYDDEIAQLGRAPST 315
RER+ VE + AA+ +D + A ++DA + + FML +G + STVERE+ F VHHA+HH A+I +I+ + G APST
Sbjct: 87 RERNTLVEQNRTAAIDEVDAILAAATASRVDAAQLHQPVHAAFMLSAEGTQVDLASTVEREMAFAVHHAIHHNALIKVIISTHFPHVKLPPTFGVAPST 185
BLAST of jgi.p|Trimin1|351803 vs. uniprot
Match: A0A812XVY0_9DINO (LolD2 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812XVY0_9DINO) HSP 1 Score: 56.6 bits (135), Expect = 6.110e-7 Identity = 39/104 (37.50%), Postives = 53/104 (50.96%), Query Frame = 1
Query: 19 ERRERHNDVETSIDAALAALDGLTDAVVKLDADSMKAKITPEFMLEVKGLEHKFNSTVERELFFCVHHAVHHMAMIALILKNIGGYDDEI-AQLGRAPST-QYE 324
+ R R VET AAL + L A+ DAD + +T + M G + ST RE+FF +HHA+HH A++ I +D E+ A G APST YE
Sbjct: 2329 DHRARGVSVETDRQAALTEISQLRSALSGFDADGLNESVTAQVMCAGDGCCAELQSTRGREIFFALHHAIHHNAILKAIAAE---FDIELDAAFGTAPSTLNYE 2429
BLAST of jgi.p|Trimin1|351803 vs. uniprot
Match: A0A1V9YB28_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YB28_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 1.560e-6 Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 1
Query: 25 RERHNDVETSIDAALAALDGLTDAVVKLDADSMKAKITPEFMLEVKGLEHKFNSTVERELFFCVHHAVHHMAMIALILK 261
R R+ VE AAL L + + + + + + FML +G E + STVERE+ F VHHA+HH AMI IL+
Sbjct: 63 RARNTAVELDRHAALDELAAILNLEASVRNEHLDQPVRAAFMLSAEGHEVELKSTVEREMAFAVHHAIHHNAMIKTILR 141
BLAST of jgi.p|Trimin1|351803 vs. uniprot
Match: A0A2E9ZLW4_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E9ZLW4_9GAMM) HSP 1 Score: 53.1 bits (126), Expect = 3.620e-6 Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 1
Query: 25 RERHNDVETSIDAALAALDGLTDAVVKLDA-DSMKAKITPEFMLEVKGLEHKFNSTVERELFFCVHHAVHHMAMIALILKNIGGYDDEIAQLGRAPST 315
R+R VE +D A ALD L + + A D ++ IT + +G STV REL V H++HH+A+IALI+K+ G D + G+A ST
Sbjct: 81 RKRDKSVENKMDVATIALDSLGRRIETMAALDHLETPITVRESVHYRGPAVTMRSTVGRELMGLVTHSIHHLAIIALIVKSYGYEMD--SDFGKAAST 176
BLAST of jgi.p|Trimin1|351803 vs. uniprot
Match: A0A6U3Y5M0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3Y5M0_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 6.170e-6 Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 184 STVERELFFCVHHAVHHMAMIALI-LKNIGGYDDEIAQ-LGRAPSTQYEDRR 333
STVEREL FC HHA+HH+AM+ +I L+ +G + E+ + GRAPST D++
Sbjct: 147 STVERELGFCAHHAIHHLAMVRIICLQTVGLNEAELPEGFGRAPSTILFDKK 198
BLAST of jgi.p|Trimin1|351803 vs. uniprot
Match: A0A7S4T454_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T454_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 1.400e-5 Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 1
Query: 184 STVERELFFCVHHAVHHMAMIALILKNIGGYD-DEIA-QLGRAPSTQYEDR 330
ST+ REL FC HHA+HHMAM+ +I N G DE+ G+APST DR
Sbjct: 163 STIGRELGFCAHHAIHHMAMVKIIALNFAGLSVDELPPDFGKAPSTIIYDR 213
BLAST of jgi.p|Trimin1|351803 vs. uniprot
Match: A0A835YJ98_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ98_9STRA) HSP 1 Score: 941 bits (2431), Expect = 0.000e+0 Identity = 713/713 (100.00%), Postives = 713/713 (100.00%), Query Frame = 1
Query: 1 MSEVSDEAVEIGETSIASYSQEYDEDSGFESEAASPLQRRPAQQQPQAHAAAHDAAAISAAAGQRLSAALDKRRRAEARRVQYISELATTKAALAAATKAHLALQGVVTDLQAEIGSYTSMVATKEEALAVVRALAQQQEQQIGDLKLRFERAQAQTEDERAAADLERALDVARAQHAAEMAAARAEMERVQQAAVAERGVLPEHHRALLXXXXXXXXTEIDRVKRWEEQAQAEAAKARRDAQLEAMHAQTLAKEGLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPHLQQLAREQAELQSSRKKCSALMAQLKLREDDIGEREAQLAAREQGVCTRDRGRSRSYSPPAGAPCVMAGNGASPSALNFNRDLSADAAGSMYARQGSLSPSYGGAATRVDLESTSEADAQSPQPEEVGALAAAKAVLNYGALTLSRETSIKIARLKKQMQADKEKAVADAEXXXXXXXXSEKNSVQERVDRETSAAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAEARGEERMAVLRDQLKAEFTSERQQLQQALEHAAETERENRQKLMNTYRAREKRLKEQMESTIHTLQSNLTLTTQRLEELEREKAGGVSAEGDTEGDTEEYKSXXXXXXXXXXXXXXXXXXXXXXXXRVVYEPVRGVAGSTTSGSSPGS 2139
MSEVSDEAVEIGETSIASYSQEYDEDSGFESEAASPLQRRPAQQQPQAHAAAHDAAAISAAAGQRLSAALDKRRRAEARRVQYISELATTKAALAAATKAHLALQGVVTDLQAEIGSYTSMVATKEEALAVVRALAQQQEQQIGDLKLRFERAQAQTEDERAAADLERALDVARAQHAAEMAAARAEMERVQQAAVAERGVLPEHHRALLXXXXXXXXTEIDRVKRWEEQAQAEAAKARRDAQLEAMHAQTLAKEGLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPHLQQLAREQAELQSSRKKCSALMAQLKLREDDIGEREAQLAAREQGVCTRDRGRSRSYSPPAGAPCVMAGNGASPSALNFNRDLSADAAGSMYARQGSLSPSYGGAATRVDLESTSEADAQSPQPEEVGALAAAKAVLNYGALTLSRETSIKIARLKKQMQADKEKAVADAEXXXXXXXXSEKNSVQERVDRETSAAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAEARGEERMAVLRDQLKAEFTSERQQLQQALEHAAETERENRQKLMNTYRAREKRLKEQMESTIHTLQSNLTLTTQRLEELEREKAGGVSAEGDTEGDTEEYKSXXXXXXXXXXXXXXXXXXXXXXXXRVVYEPVRGVAGSTTSGSSPGS
Sbjct: 1 MSEVSDEAVEIGETSIASYSQEYDEDSGFESEAASPLQRRPAQQQPQAHAAAHDAAAISAAAGQRLSAALDKRRRAEARRVQYISELATTKAALAAATKAHLALQGVVTDLQAEIGSYTSMVATKEEALAVVRALAQQQEQQIGDLKLRFERAQAQTEDERAAADLERALDVARAQHAAEMAAARAEMERVQQAAVAERGVLPEHHRALLXXXXXXXXTEIDRVKRWEEQAQAEAAKARRDAQLEAMHAQTLAKEGLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPHLQQLAREQAELQSSRKKCSALMAQLKLREDDIGEREAQLAAREQGVCTRDRGRSRSYSPPAGAPCVMAGNGASPSALNFNRDLSADAAGSMYARQGSLSPSYGGAATRVDLESTSEADAQSPQPEEVGALAAAKAVLNYGALTLSRETSIKIARLKKQMQADKEKAVADAEXXXXXXXXSEKNSVQERVDRETSAAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAEARGEERMAVLRDQLKAEFTSERQQLQQALEHAAETERENRQKLMNTYRAREKRLKEQMESTIHTLQSNLTLTTQRLEELEREKAGGVSAEGDTEGDTEEYKSXXXXXXXXXXXXXXXXXXXXXXXXRVVYEPVRGVAGSTTSGSSPGS 713 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351803 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
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BLAST of jgi.p|Trimin1|351803 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10034 ID=mRNA_10034|Name=jgi.p|Trimin1|351803|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=339bp|location=Sequence derived from alignment at Contig_100:261441..264364+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCCAGCAAATCGGACGAGAGACGCGAGAGGCACAATGACGTGGAGACback to top protein sequence of jgi.p|Trimin1|351803 >Trimin1|351803|estExt_Genemark1.C_Ctg_1000038 ID=Trimin1|351803|estExt_Genemark1.C_Ctg_1000038|Name=jgi.p|Trimin1|351803|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=113bp MASKSDERRERHNDVETSIDAALAALDGLTDAVVKLDADSMKAKITPEFMback to top mRNA from alignment at Contig_100:261441..264364+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10034 ID=mRNA_10034|Name=jgi.p|Trimin1|351803|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2924bp|location=Sequence derived from alignment at Contig_100:261441..264364+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_100:261441..264364+ >mRNA_10034 ID=mRNA_10034|Name=jgi.p|Trimin1|351803|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=339bp|location=Sequence derived from alignment at Contig_100:261441..264364+ (Tribonema minus UTEX_B_3156 )back to top |